Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G063900 Manihot esculenta HOM05D004153 ORTHO05D004678 1.6e-103 379.4 191 100.0
Manes.04G056100 Manihot esculenta HOM05D004153 ORTHO05D004678 9.6e-72 273.9 165 78.8
Potri.002G206100 Populus trichocarpa HOM05D004153 ORTHO05D004678 1.1e-67 260.4 198 66.2
Potri.014G131400 Populus trichocarpa HOM05D004153 ORTHO05D004678 2.1e-66 256.1 200 65.0
Duzib138G0244 Durio zibethinus HOM05D004153 ORTHO05D004678 6.2e-63 244.6 198 63.1
Sabra02G0153200 Salix brachista HOM05D004153 ORTHO05D004678 6.9e-62 241.1 198 62.1
COL.COLO4_23373 Corchorus olitorius HOM05D004153 ORTHO05D004678 1.2e-61 240.4 193 63.2
Gorai.008G011200 Gossypium raimondii HOM05D004153 ORTHO05D004678 2.4e-59 232.6 191 60.7
Gohir.D12G011200 Gossypium hirsutum HOM05D004153 ORTHO05D004678 9.3e-59 230.7 191 60.2
TWI23G0022 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 2.1e-58 229.6 195 58.5
Gohir.A12G010800 Gossypium hirsutum HOM05D004153 ORTHO05D004678 4.6e-58 228.4 191 60.7
FAN15G0276 Fragaria x ananassa HOM05D004153 ORTHO05D004678 7.9e-58 227.6 191 61.3
Atru.chr5.1180 Acer truncatum HOM05D004153 ORTHO05D004678 2.3e-57 226.1 159 67.3
Prupe.8G258500 Prunus persica HOM05D004153 ORTHO05D004678 6.7e-57 224.6 188 59.0
FAN15G2246 Fragaria x ananassa HOM05D000802 ORTHO05D001074 1.9e-56 223.0 187 61.0
Cc01_g20660 Coffea canephora HOM05D004153 ORTHO05D004678 1.6e-55 219.9 192 57.3
Peaxi162Scf00067g00254 Petunia axillaris HOM05D004153 ORTHO05D004678 2.1e-55 219.5 189 56.1
RcHm_v2.0_Chr6g0293581 Rosa chinensis HOM05D004153 ORTHO05D004678 2.8e-55 219.2 195 57.9
Migut.D00197 Erythranthe guttata HOM05D004153 ORTHO05D004678 4.8e-55 218.4 190 56.8
FvH4_2g25400 Fragaria vesca HOM05D004153 ORTHO05D004678 4.8e-55 218.4 191 60.2
FAN20G2301 Fragaria x ananassa HOM05D004153 ORTHO05D004678 4.8e-55 218.4 191 60.7
FAN24G2766 Fragaria x ananassa HOM05D004153 ORTHO05D004678 4.8e-55 218.4 191 60.2
Nitab4.5_0003901g0020 Nicotiana tabacum HOM05D004153 ORTHO05D004678 4.8e-55 218.4 196 54.6
FAN27G1399 Fragaria x ananassa HOM05D004153 ORTHO05D004678 1.1e-54 217.2 186 59.1
Oeu030970.1 Olea europaea HOM05D004153 ORTHO05D004678 2.4e-54 216.1 194 56.7
Aqoxy2G02983 Aquilegia oxysepala HOM05D004153 ORTHO05D004678 3.1e-54 215.7 193 55.4
Nitab4.5_0000619g0070 Nicotiana tabacum HOM05D004153 ORTHO05D004678 9.0e-54 214.2 193 54.4
Solyc09g074910.1 Solanum lycopersicum HOM05D004153 ORTHO05D004678 2.2e-52 209.5 185 55.1
Sopen09g029730 Solanum pennellii HOM05D004153 ORTHO05D004678 3.8e-52 208.8 185 54.6
MD03G1285300 Malus domestica HOM05D004153 ORTHO05D004678 8.4e-52 207.6 190 54.7
QL12p027168 Quercus lobata HOM05D004153 ORTHO05D004678 1.1e-51 207.2 187 56.1
Ciclev10022120m.g Citrus clementina HOM05D004153 ORTHO05D004678 2.5e-51 206.1 194 56.2
Hma1.2p1_0209F.1_g088580 Hydrangea macrophylla HOM05D004153 ORTHO05D004678 3.2e-51 205.7 153 63.4
Nn4g25841 Nelumbo nucifera HOM05D004153 ORTHO05D004678 1.2e-50 203.8 190 55.3
Thecc.01G297300 Theobroma cacao HOM05D004153 ORTHO05D004678 1.2e-50 203.8 197 55.3
CAN.G339.31 Capsicum annuum HOM05D004153 ORTHO05D004678 2.1e-50 203.0 193 51.8
THA.LOC104802169 Tarenaya hassleriana HOM05D004153 ORTHO05D004678 6.0e-50 201.4 183 55.2
SalBow3G0249 Salvia bowleyana HOM05D004153 ORTHO05D004678 2.3e-49 199.5 158 57.6
TAR365G1014 Trochodendron aralioides HOM05D004153 ORTHO05D004678 2.3e-49 199.5 136 64.0
CiPaw.07G106600 Carya illinoinensis HOM05D004153 ORTHO05D004678 1.9e-48 196.4 187 53.5
Cpa.g.sc9.210 Carica papaya HOM05D004153 ORTHO05D004678 4.3e-48 195.3 206 50.5
PSO017G2667 Papaver somniferum HOM05D004153 ORTHO05D004678 5.7e-48 194.9 193 51.3
PGSC0003DMG400035200 Solanum tuberosum HOM05D004153 ORTHO05D004678 5.7e-48 194.9 186 52.2
Carub.0004s3048 Capsella rubella HOM05D004153 ORTHO05D004678 9.6e-48 194.1 197 52.3
Haze_04898 Corylus avellana HOM05D004153 ORTHO05D004678 9.6e-48 194.1 154 63.0
Lj1g0005892 Lotus japonicus HOM05D004153 ORTHO05D004678 9.6e-48 194.1 174 52.9
Nn5g27910 Nelumbo nucifera HOM05D004153 ORTHO05D004678 1.3e-47 193.7 183 51.9
SGA_v2.0_scaffold2G01404 Striga asiatica HOM05D004153 ORTHO05D004678 2.1e-47 193.0 195 49.7
EL10Ac6g15659 Beta vulgaris HOM05D004153 ORTHO05D004678 6.3e-47 191.4 161 55.3
AT2G47770 Arabidopsis thaliana HOM05D004153 ORTHO05D004678 1.1e-46 190.7 197 51.8
Lsat_1_v5_gn_5_190540 Lactuca sativa HOM05D004153 ORTHO05D004678 3.1e-46 189.1 159 56.0
PSO675G8366 Papaver somniferum HOM05D004153 ORTHO05D004678 3.1e-46 189.1 192 48.4
Glyma.03G213300 Glycine max HOM05D004153 ORTHO05D004678 4.1e-46 188.7 192 51.0
Lj3P816T18 Lonicera japonica HOM05D004153 ORTHO05D004678 4.1e-46 188.7 155 56.8
AL4G47340 Arabidopsis lyrata HOM05D004153 ORTHO05D004678 5.3e-46 188.3 197 50.8
PGR119G1654 Punica granatum HOM05D004153 ORTHO05D004678 2.6e-45 186.0 196 54.1
PGR119G2063 Punica granatum HOM05D004153 ORTHO05D004678 2.6e-45 186.0 196 54.1
CARHR143140 Cardamine hirsuta HOM05D004153 ORTHO05D004678 3.4e-45 185.7 197 50.8
DCAR_002817 Daucus carota HOM05D004153 ORTHO05D004678 5.9e-45 184.9 159 56.6
Psat3g022920 Pisum sativum HOM05D004153 ORTHO05D004678 7.6e-45 184.5 176 55.1
Ah.08g213200 Amaranthus hybridus HOM05D004153 ORTHO05D004678 1.0e-44 184.1 191 45.0
Cfa005949 Carpinus fangiana HOM05D004153 ORTHO05D004678 2.2e-44 183.0 130 66.2
Lalb_Chr18g0047121 Lupinus albus HOM05D004153 ORTHO05D004678 2.9e-44 182.6 206 48.5
Medtr7g108650 Medicago truncatula HOM05D004153 ORTHO05D004678 1.1e-43 180.6 194 49.5
Lj1C0T8 Lonicera japonica HOM05D004153 ORTHO05D004678 1.4e-43 180.3 163 56.4
AUR62033157 Chenopodium quinoa HOM05D004153 ORTHO05D004678 1.6e-42 176.8 190 46.3
AUR62033169 Chenopodium quinoa HOM05D004153 ORTHO05D004678 1.6e-42 176.8 190 46.3
unitig_0.g1178 Utricularia gibba HOM05D004153 ORTHO05D004678 1.6e-42 176.8 187 47.1
VMungo1383G3271 Vigna mungo HOM05D004153 ORTHO05D004678 4.6e-42 175.3 194 49.0
Lsat_1_v5_gn_9_1141 Lactuca sativa HOM05D004153 ORTHO05D004678 6.1e-42 174.9 164 49.4
MBI18_g21824_MAGBIO Magnolia biondii HOM05D004153 ORTHO05D004678 7.9e-42 174.5 187 49.2
CANSAT78G0904 Cannabis sativa HOM05D004153 ORTHO05D004678 1.0e-41 174.1 187 48.7
Lj3P819T20 Lonicera japonica HOM05D004153 ORTHO05D004678 1.0e-41 174.1 141 56.7
Lalb_Chr15g0078571 Lupinus albus HOM05D004153 ORTHO05D004678 1.0e-41 174.1 168 50.6
Ciclev10007035m.g Citrus clementina HOM05D004153 ORTHO05D004678 2.3e-41 172.9 158 51.3
Aa31LG1G29110 Aethionema arabicum HOM05D004153 ORTHO05D004678 3.9e-41 172.2 200 47.5
Phvul.001G205900 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 5.1e-41 171.8 193 47.7
arahy.Tifrunner.gnm1.ann1.3INE6D Arachis hypogaea HOM05D004153 ORTHO05D004678 6.7e-41 171.4 151 54.3
HanXRQChr10g0284631 Helianthus annuus HOM05D004153 ORTHO05D004678 8.7e-41 171.0 162 48.1
Thhalv10001647m.g Eutrema salsugineum HOM05D004153 ORTHO05D004678 2.5e-40 169.5 196 50.0
AUR62008617 Chenopodium quinoa HOM05D004153 ORTHO05D004678 3.3e-40 169.1 190 45.3
BolC4t28778H Brassica oleracea HOM05D004153 ORTHO05D004678 5.7e-40 168.3 198 50.0
Prupe.1G136800 Prunus persica HOM05D004153 ORTHO05D004678 5.7e-40 168.3 143 53.1
CANSAT01G1893 Cannabis sativa HOM05D004153 ORTHO05D004678 7.4e-40 167.9 191 46.6
BraA04t18942Z Brassica rapa HOM05D004153 ORTHO05D004678 9.7e-40 167.5 198 50.0
A04p35060 Brassica napus HOM05D004153 ORTHO05D004678 1.6e-39 166.8 198 49.5
HanXRQChr01g0001291 Helianthus annuus HOM05D004153 ORTHO05D004678 2.2e-39 166.4 169 50.3
BcaC02g06991 Brassica carinata HOM05D004153 ORTHO05D004678 1.1e-38 164.1 199 50.3
Haze_01203 Corylus avellana HOM05D004153 ORTHO05D004678 1.8e-38 163.3 156 49.4
RcHm_v2.0_Chr4g0422241 Rosa chinensis HOM05D004153 ORTHO05D004678 1.8e-38 163.3 195 44.1
C04p72970 Brassica napus HOM05D004153 ORTHO05D004678 3.1e-38 162.5 199 49.7
BcaB06g29494 Brassica carinata HOM05D004153 ORTHO05D004678 6.9e-38 161.4 200 48.5
BcaB06g29497 Brassica carinata HOM05D004153 ORTHO05D004678 6.9e-38 161.4 200 48.5
Sp4g29700 Schrenkiella parvula HOM05D004153 ORTHO05D004678 1.5e-37 160.2 197 46.2
TWI53G1241 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 2.6e-37 159.5 150 47.3
Glyma.09G044900 Glycine max HOM05D004153 ORTHO05D004678 3.4e-37 159.1 165 46.1
Eucgr.B01312 Eucalyptus grandis HOM05D004153 ORTHO05D004678 5.9e-37 158.3 162 45.7
CSS0027100 Camellia sinensis var. sinensis HOM05D004153 ORTHO05D004678 1.0e-36 157.5 155 50.3
Duzib052G0234 Durio zibethinus HOM05D004153 ORTHO05D004678 1.0e-36 157.5 161 46.0
FAN07G0961 Fragaria x ananassa HOM05D004153 ORTHO05D004678 1.7e-36 156.8 151 49.0
Phvul.009G248000 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 1.7e-36 156.8 164 45.7
Glyma.15G147800 Glycine max HOM05D004153 ORTHO05D004678 6.5e-36 154.8 161 44.7
Lalb_Chr18g0051691 Lupinus albus HOM05D004153 ORTHO05D004678 1.1e-35 154.1 161 47.2
BcaB06g29496 Brassica carinata HOM05D004153 ORTHO05D004678 3.2e-35 152.5 156 52.6
C04p00110 Brassica napus HOM05D004153 ORTHO05D004678 3.2e-35 152.5 192 46.9
Lj6g0000547 Lotus japonicus HOM05D004153 ORTHO05D004678 3.2e-35 152.5 160 46.2
Thecc.04G284700 Theobroma cacao HOM05D004153 ORTHO05D004678 3.2e-35 152.5 162 45.1
BolC4t21658H Brassica oleracea HOM05D004153 ORTHO05D004678 7.2e-35 151.4 192 46.4
TPR.G13834 Trifolium pratense HOM05D004153 ORTHO05D004678 7.2e-35 151.4 164 44.5
MD11G1304700 Malus domestica HOM05D004153 ORTHO05D004678 9.4e-35 151.0 99 66.7
VMungo1309G0390 Vigna mungo HOM05D004153 ORTHO05D004678 9.4e-35 151.0 164 43.3
Atru.chr4.2837 Acer truncatum HOM05D004153 ORTHO05D004678 1.2e-34 150.6 171 43.3
EL10Ac3g06596 Beta vulgaris HOM05D004153 ORTHO05D004678 6.1e-34 148.3 163 45.4
Gohir.D10G170400 Gossypium hirsutum HOM05D004153 ORTHO05D004678 1.0e-33 147.5 166 41.6
HPP92_016940 Vanilla planifolia HOM05D004153 ORTHO05D004678 1.0e-33 147.5 186 43.5
BcaC02g12543 Brassica carinata HOM05D004153 ORTHO05D004678 1.4e-33 147.1 192 45.8
Gohir.A10G164100 Gossypium hirsutum HOM05D004153 ORTHO05D004678 1.8e-33 146.7 166 41.6
Psat1g153880 Pisum sativum HOM05D004153 ORTHO05D004678 1.8e-33 146.7 164 43.3
Gorai.011G190200 Gossypium raimondii HOM05D004153 ORTHO05D004678 3.9e-33 145.6 166 41.0
TWI73G1192 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 3.9e-33 145.6 164 42.1
ClCG09G006030 Citrullus lanatus HOM05D004153 ORTHO05D004678 2.0e-32 143.3 191 40.8
ATR0796G004 Amborella trichopoda HOM05D004153 ORTHO05D004678 4.4e-32 142.1 181 41.4
Rhsim01G0283900 Rhododendron simsii HOM05D004153 ORTHO05D004678 2.2e-31 139.8 169 43.8
Rhsim04G0221600 Rhododendron simsii HOM05D004153 ORTHO05D004678 2.8e-31 139.4 157 45.9
Sed0018454 Sechium edule HOM05D004153 ORTHO05D004678 4.8e-31 138.7 155 44.5
Sc13g0003480 Simmondsia chinensis HOM05D004153 ORTHO05D004678 1.4e-30 137.1 158 45.6
BraA05t19015Z Brassica rapa HOM05D004153 ORTHO05D004678 3.1e-30 136.0 193 43.5
CDE02G0764 Ceratophyllum demersum HOM05D004153 ORTHO05D004678 9.1e-30 134.4 156 48.7
Medtr2g436790 Medicago truncatula HOM05D004153 ORTHO05D004678 9.1e-30 134.4 160 41.2
PGR031G1230 Punica granatum HOM05D004153 ORTHO05D004678 9.1e-30 134.4 167 38.9
A05p00190 Brassica napus HOM05D004153 ORTHO05D004678 1.5e-29 133.7 193 43.0
MELO3C006663.2 Cucumis melo HOM05D004153 ORTHO05D004678 1.5e-29 133.7 163 39.3
Potri.010G025200 Populus trichocarpa HOM05D004153 ORTHO05D004678 2.6e-29 132.9 161 39.1
Sed0026977 Sechium edule HOM05D004153 ORTHO05D004678 3.4e-29 132.5 187 41.7
CsaV3_3G014620 Cucumis sativus L. HOM05D004153 ORTHO05D004678 1.0e-28 131.0 166 37.3
MELO3C016017.2 Cucumis melo HOM05D004153 ORTHO05D004678 2.2e-28 129.8 190 39.5
Sed0010104 Sechium edule HOM05D004153 ORTHO05D004678 6.5e-28 128.3 156 40.4
Manes.03G195100 Manihot esculenta HOM05D004153 ORTHO05D004678 2.5e-27 126.3 133 43.6
Actinidia24837 Actinidia chinensis HOM05D004153 ORTHO05D004678 2.7e-26 122.9 111 53.2
Ca_01937_v3 Cicer arietinum L. HOM05D000639 ORTHO05D004019 3.6e-26 122.5 116 48.3
BcaB02g08747 Brassica carinata HOM05D004153 ORTHO05D004678 3.0e-25 119.4 192 40.1
Sabra10G0013900 Salix brachista HOM05D004153 ORTHO05D004678 2.6e-24 116.3 159 40.9
CsaV3_7G029110 Cucumis sativus L. HOM05D004153 ORTHO05D004678 8.2e-23 111.3 112 46.4
CBR_g30074 Chara braunii HOM05D004153 ORTHO05D004678 3.5e-21 105.9 144 34.0
Lj1C32T8 Lonicera japonica HOM05D004153 ORTHO05D004678 1.7e-20 103.6 190 37.9
SEGI_18828 Sequoiadendron giganteum HOM05D004153 ORTHO05D004678 1.7e-20 103.6 156 35.3
Zm00001eb354150 Zea mays HOM05D004153 ORTHO05D004678 3.6e-18 95.9 101 46.5
Pp3c24_14170 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.0e-17 94.4 162 37.0
Pp3c4_22190 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.0e-17 94.4 145 34.5
Actinidia21057 Actinidia chinensis HOM05D004153 ORTHO05D004678 1.8e-17 93.6 121 41.3
Pp3c26_2060 Physcomitrium patens HOM05D004153 ORTHO05D004678 2.3e-17 93.2 145 37.2
AagrBONN_evm.TU.Sc2ySwM_362.296 Anthoceros agrestis HOM05D004153 ORTHO05D004678 1.5e-16 90.5 166 33.7
Mapoly0050s0023 Marchantia polymorpha HOM05D004153 ORTHO05D004678 2.6e-16 89.7 189 32.3
ECA248G0131 Erigeron canadensis HOM05D004153 ORTHO05D004678 4.4e-16 89.0 102 45.1
Dinv19716 Davidia involucrata HOM05D004153 ORTHO05D004678 5.7e-16 88.6 185 35.1
SMO115G0169 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 1.7e-15 87.0 127 33.1
Pp3c2_17540 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.1e-14 84.3 197 28.9
Os05g0151200 Oryza sativa ssp. japonica HOM05D004153 ORTHO05D004678 1.8e-14 83.6 185 28.1
SMO144G0096 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 1.8e-14 83.6 151 32.5
Pp3c10_6760 Physcomitrium patens HOM05D004153 ORTHO05D004678 3.1e-14 82.8 195 28.7
AagrBONN_evm.TU.Sc2ySwM_117.3397 Anthoceros agrestis HOM05D004153 ORTHO05D004678 1.7e-12 77.0 135 32.6
BcaB01g03159 Brassica carinata HOM05D004153 ORTHO05D004678 2.2e-12 76.6 156 35.3
Rhsim07G0194500 Rhododendron simsii HOM05D035787 ORTHO05D004678 1.1e-11 74.3 190 32.6
Rhsim09G0027200 Rhododendron simsii HOM05D041434 ORTHO05D004678 5.5e-11 72.0 157 31.8
Rhsim09G0027400 Rhododendron simsii HOM05D008235 ORTHO05D009358 2.1e-10 70.1 116 37.1
RhsimUnG0080000 Rhododendron simsii HOM05D035787 ORTHO05D004678 2.3e-09 66.6 156 32.1
SMO340G0010 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 8.8e-09 64.7 140 30.0
Rhsim07G0178900 Rhododendron simsii HOM05D035787 ORTHO05D004678 2.0e-08 63.5 176 30.1


User provided reference genes

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