Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G061000 Manihot esculenta HOM05D005239 ORTHO05D006698 5.8e-228 793.9 403 100.0
TWI59G0212 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 8.3e-158 560.8 460 67.4
Potri.002G216100 Populus trichocarpa HOM05D005239 ORTHO05D006698 1.8e-157 559.7 450 69.3
Sabra02G0168400 Salix brachista HOM05D005239 ORTHO05D006698 2.4e-157 559.3 450 68.9
Gorai.006G218900 Gossypium raimondii HOM05D005239 ORTHO05D006698 4.1e-157 558.5 458 67.7
RcHm_v2.0_Chr6g0273481 Rosa chinensis HOM05D005239 ORTHO05D006698 4.5e-156 555.1 439 69.5
Gohir.D09G195500 Gossypium hirsutum HOM05D005239 ORTHO05D006698 5.9e-156 554.7 458 67.5
Gohir.A09G201600 Gossypium hirsutum HOM05D005239 ORTHO05D006698 3.8e-155 552.0 458 67.5
CsaV3_3G010220 Cucumis sativus L. HOM05D005239 ORTHO05D006698 1.1e-154 550.4 448 66.5
Thecc.04G216000 Theobroma cacao HOM05D005239 ORTHO05D006698 1.1e-154 550.4 449 67.7
CiPaw.13G020400 Carya illinoinensis HOM05D005239 ORTHO05D006698 1.9e-154 549.7 462 67.1
CSS0007844 Camellia sinensis var. sinensis HOM05D005239 ORTHO05D006698 3.6e-153 545.4 465 64.3
MD08G1235300 Malus domestica HOM05D005239 ORTHO05D006698 4.7e-153 545.0 449 66.8
Prupe.1G571600 Prunus persica HOM05D005239 ORTHO05D006698 4.7e-153 545.0 443 65.9
TWI14G1099 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 1.0e-152 543.9 455 67.5
MELO3C006242.2 Cucumis melo HOM05D005239 ORTHO05D006698 1.8e-152 543.1 448 65.2
PGR119G0794 Punica granatum HOM05D005239 ORTHO05D006698 2.3e-152 542.7 422 69.9
FvH4_2g12720 Fragaria vesca HOM05D005239 ORTHO05D006698 3.0e-152 542.3 439 67.9
Actinidia21601 Actinidia chinensis HOM05D005239 ORTHO05D006698 6.8e-152 541.2 449 65.9
Dinv43567 Davidia involucrata HOM05D005239 ORTHO05D006698 1.5e-151 540.0 407 71.5
FAN27G2303 Fragaria x ananassa HOM05D005239 ORTHO05D006698 4.4e-151 538.5 452 66.4
TAR629G3002 Trochodendron aralioides HOM05D005239 ORTHO05D006698 4.4e-151 538.5 433 68.1
FAN15G3107 Fragaria x ananassa HOM05D005239 ORTHO05D006698 7.5e-151 537.7 452 66.4
Hma1.2p1_0601F.1_g187220 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 7.5e-151 537.7 463 64.6
Sed0010493 Sechium edule HOM05D005239 ORTHO05D006698 7.5e-151 537.7 399 71.4
TAR636G2805 Trochodendron aralioides HOM05D005239 ORTHO05D006698 7.5e-151 537.7 454 65.4
Duzib151G1142 Durio zibethinus HOM05D005239 ORTHO05D006698 1.3e-150 537.0 459 65.8
Ciclev10020370m.g Citrus clementina HOM05D005239 ORTHO05D006698 4.9e-150 535.0 396 71.7
Sed0027364 Sechium edule HOM05D005239 ORTHO05D006698 6.4e-150 534.6 445 64.9
COL.COLO4_20862 Corchorus olitorius HOM05D005239 ORTHO05D006698 1.1e-149 533.9 456 64.0
Atru.chr9.1540 Acer truncatum HOM05D005239 ORTHO05D006698 1.4e-149 533.5 420 67.9
ClCG05G002730 Citrullus lanatus HOM05D005239 ORTHO05D006698 2.0e-148 529.6 450 64.4
QL04p024849 Quercus lobata HOM05D005239 ORTHO05D006698 4.6e-148 528.5 366 76.0
Nitab4.5_0004264g0020 Nicotiana tabacum HOM05D005239 ORTHO05D006698 5.9e-148 528.1 448 64.5
GSVIVG01018386001 Vitis vinifera HOM05D005239 ORTHO05D006698 1.0e-147 527.3 448 65.4
Nn6g33642 Nelumbo nucifera HOM05D005239 ORTHO05D006698 2.3e-147 526.2 460 64.1
vmacro21097 Vaccinium macrocarpon HOM05D005239 ORTHO05D006698 1.1e-146 523.9 444 65.1
Peaxi162Scf01144g00013 Petunia axillaris HOM05D005239 ORTHO05D006698 2.5e-146 522.7 444 63.7
Dinv44000 Davidia involucrata HOM05D005239 ORTHO05D001060 5.6e-146 521.5 371 73.0
Sc20g0003020 Simmondsia chinensis HOM05D005239 ORTHO05D006698 7.3e-146 521.2 437 63.8
THA.LOC104817164 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 9.5e-146 520.8 401 68.6
THA.LOC104802511 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 4.7e-145 518.5 397 67.8
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 6.2e-145 518.1 394 70.1
Solyc01g080860.3 Solanum lycopersicum HOM05D005239 ORTHO05D006698 6.2e-145 518.1 455 63.5
Sopen01g032450 Solanum pennellii HOM05D005239 ORTHO05D006698 1.4e-144 516.9 455 63.5
Eucgr.H02846 Eucalyptus grandis HOM05D005239 ORTHO05D006698 8.9e-144 514.2 466 60.9
CANSAT54G1536 Cannabis sativa HOM05D005239 ORTHO05D006698 1.5e-143 513.5 440 63.2
CAN.G1480.7 Capsicum annuum HOM05D005239 ORTHO05D006698 3.4e-143 512.3 382 70.7
Cc02_g25930 Coffea canephora HOM05D005239 ORTHO05D006698 9.8e-143 510.8 450 64.2
PGSC0003DMG400001672 Solanum tuberosum HOM05D005239 ORTHO05D006698 3.7e-142 508.8 480 60.6
CDE04G1215 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 8.3e-142 507.7 445 60.7
Rhsim01G0145300 Rhododendron simsii HOM05D005239 ORTHO05D006698 1.1e-141 507.3 481 60.3
SGA_v2.0_scaffold69G23296 Striga asiatica HOM05D005239 ORTHO05D006698 1.9e-141 506.5 434 64.3
DCAR_029633 Daucus carota HOM05D005239 ORTHO05D006698 2.4e-141 506.1 408 65.9
Ah.06g191320 Amaranthus hybridus HOM05D005239 ORTHO05D006698 4.1e-141 505.4 443 61.4
ECA234G1231 Erigeron canadensis HOM05D005239 ORTHO05D006698 7.0e-141 504.6 442 62.2
Aqoxy3G02472 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 1.2e-140 503.8 465 61.7
AUR62041654 Chenopodium quinoa HOM05D005239 ORTHO05D006698 2.0e-140 503.1 450 61.8
SGA_v2.0_scaffold52G19274 Striga asiatica HOM05D005239 ORTHO05D006698 2.0e-140 503.1 437 62.7
VMungo0720G0476 Vigna mungo HOM05D005239 ORTHO05D006698 2.0e-140 503.1 370 72.2
AUR62035533 Chenopodium quinoa HOM05D005239 ORTHO05D006698 3.5e-140 502.3 449 61.2
Glyma.20G243400 Glycine max HOM05D005239 ORTHO05D006698 4.6e-140 501.9 400 67.5
Lj5g0010357 Lotus japonicus HOM05D005239 ORTHO05D006698 1.0e-139 500.7 402 66.7
arahy.Tifrunner.gnm1.ann1.X9CQTL Arachis hypogaea HOM05D005239 ORTHO05D006698 2.3e-139 499.6 385 68.3
Oeu002884.1 Olea europaea HOM05D005239 ORTHO05D006698 3.0e-139 499.2 524 56.1
Phvul.007G006700 Phaseolus vulgaris HOM05D005239 ORTHO05D006698 1.9e-138 496.5 373 70.2
arahy.Tifrunner.gnm1.ann1.XN1C7B Arachis hypogaea HOM05D005239 ORTHO05D006698 2.5e-138 496.1 359 71.6
PSO302G0170 Papaver somniferum HOM05D005239 ORTHO05D006698 1.2e-137 493.8 464 61.0
EL10Ac4g08842 Beta vulgaris HOM05D005239 ORTHO05D006698 2.8e-137 492.7 443 61.4
PSO170G2576 Papaver somniferum HOM05D005239 ORTHO05D006698 6.2e-137 491.5 468 60.0
Thhalv10001456m.g Eutrema salsugineum HOM05D005239 ORTHO05D006698 8.1e-137 491.1 442 60.0
AL4G43540 Arabidopsis lyrata HOM05D005239 ORTHO05D006698 1.8e-136 490.0 401 63.6
Haze_02934 Corylus avellana HOM05D005239 ORTHO05D006698 3.1e-136 489.2 424 64.2
Aa31LG1G26110 Aethionema arabicum HOM05D005239 ORTHO05D006698 1.5e-135 486.9 407 62.9
AT2G44520 Arabidopsis thaliana HOM05D005239 ORTHO05D006698 1.5e-135 486.9 407 62.4
Sp4g26610 Schrenkiella parvula HOM05D005239 ORTHO05D006698 2.0e-135 486.5 403 63.3
Carub.0004s2708 Capsella rubella HOM05D005239 ORTHO05D006698 2.6e-135 486.1 426 61.0
BraA04t18797Z Brassica rapa HOM05D005239 ORTHO05D006698 3.4e-135 485.7 401 63.8
Medtr1g116110 Medicago truncatula HOM05D005239 ORTHO05D006698 4.4e-135 485.3 392 65.3
TPR.G10426 Trifolium pratense HOM05D005239 ORTHO05D006698 7.5e-135 484.6 365 68.8
BolC4t28610H Brassica oleracea HOM05D005239 ORTHO05D006698 1.3e-134 483.8 401 63.6
HanXRQChr17g0562471 Helianthus annuus HOM05D005239 ORTHO05D006698 1.3e-134 483.8 400 64.8
BcaC02g07098 Brassica carinata HOM05D005239 ORTHO05D006698 1.7e-134 483.4 359 68.5
Ca_11344_v3 Cicer arietinum L. HOM05D005239 ORTHO05D006698 2.2e-134 483.0 366 69.1
BcaB06g29384 Brassica carinata HOM05D005239 ORTHO05D006698 6.4e-134 481.5 351 68.9
Lalb_Chr02g0143811 Lupinus albus HOM05D005239 ORTHO05D006698 1.2e-132 477.2 360 68.6
Psat6g232360 Pisum sativum HOM05D005239 ORTHO05D006698 1.2e-132 477.2 365 68.2
Lj9A547G68 Lonicera japonica HOM05D005239 ORTHO05D006698 4.6e-132 475.3 337 73.3
ATR1153G024 Amborella trichopoda HOM05D005239 ORTHO05D006698 3.9e-131 472.2 422 60.9
unitig_26.g9718 Utricularia gibba HOM05D005239 ORTHO05D006698 4.3e-130 468.8 451 57.6
C04p05410 Brassica napus HOM05D005239 ORTHO05D006698 4.7e-129 465.3 352 67.9
BolC4t22181H Brassica oleracea HOM05D005239 ORTHO05D006698 4.7e-129 465.3 352 67.9
HPP92_001886 Vanilla planifolia HOM05D005239 ORTHO05D006698 8.1e-129 464.5 301 75.7
BcaNung07053 Brassica carinata HOM05D005239 ORTHO05D006698 6.4e-126 454.9 339 68.7
Os01g0527700 Oryza sativa ssp. japonica HOM05D005239 ORTHO05D006698 4.1e-125 452.2 354 66.7
Duzib212G0896 Durio zibethinus HOM05D005239 ORTHO05D006698 9.2e-125 451.1 459 58.6
Zm00001eb402310 Zea mays HOM05D005239 ORTHO05D006698 3.5e-124 449.1 364 65.7
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 1.0e-123 447.6 325 69.8
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 3.0e-123 446.0 328 69.2
Lsat_1_v5_gn_4_39040 Lactuca sativa HOM05D005239 ORTHO05D006698 1.2e-121 440.7 385 62.9
BcaC02g12301 Brassica carinata HOM05D005239 ORTHO05D006698 4.7e-121 438.7 335 67.2
Nitab4.5_0001476g0120 Nicotiana tabacum HOM05D005239 ORTHO05D006698 6.2e-121 438.3 448 56.9
Cpa.g.sc20.28 Carica papaya HOM05D005239 ORTHO05D006698 3.2e-117 426.0 293 75.4
Actinidia33289 Actinidia chinensis HOM05D005239 ORTHO05D006698 3.0e-115 419.5 328 69.5
MD15G1426600 Malus domestica HOM05D005239 ORTHO05D006698 5.1e-115 418.7 305 71.8
Zm00001eb005400 Zea mays HOM05D005239 ORTHO05D006698 1.9e-114 416.8 333 66.1
SEGI_24425 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 3.8e-110 402.5 268 71.3
Migut.B01467 Erythranthe guttata HOM05D005239 ORTHO05D006698 6.7e-107 391.7 322 66.5
AagrBONN_evm.TU.Sc2ySwM_369.187 Anthoceros agrestis HOM05D005239 ORTHO05D006698 5.8e-103 378.6 351 55.8
Hma1.2p1_0601F.1_g187230 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 3.9e-99 365.9 300 67.3
SMO364G0841 Selaginella moellendorffii HOM05D005239 ORTHO05D006698 2.1e-97 360.1 339 52.8
Mapoly0029s0153 Marchantia polymorpha HOM05D005239 ORTHO05D006698 4.6e-92 342.4 348 52.0
CAN.G74.42 Capsicum annuum HOM05D005239 ORTHO05D006698 1.9e-90 337.0 286 62.9
CBR_g3821 Chara braunii HOM05D005239 ORTHO05D006698 1.3e-89 334.3 304 55.9
CDE12G0888 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 1.1e-88 331.3 244 69.7
CARHR139710 Cardamine hirsuta HOM05D005239 ORTHO05D006698 1.8e-88 330.5 238 69.3
PSO357G0304 Papaver somniferum HOM05D005239 ORTHO05D006698 1.0e-86 324.7 204 79.4
Pp3c14_19200 Physcomitrium patens HOM05D005239 ORTHO05D006698 2.7e-84 316.6 261 60.2
Oeu037395.1 Olea europaea HOM05D005239 ORTHO05D006698 3.2e-77 293.1 309 57.9
Cre12.g516350 Chlamydomonas reinhardtii HOM05D005239 ORTHO05D006698 5.0e-70 269.2 278 49.6
MCO03G363 Micromonas commoda HOM05D005239 ORTHO05D006698 1.4e-67 261.2 283 48.8
Aqoxy5G02001 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 7.4e-66 255.4 196 67.9
PRCOL_00000009 Prasinoderma coloniale HOM05D005239 ORTHO05D006698 1.1e-64 251.5 291 46.4
BraA05t19443Z Brassica rapa HOM05D005239 ORTHO05D006698 1.8e-64 250.8 280 51.8
A05p04670 Brassica napus HOM05D005239 ORTHO05D006698 3.5e-63 246.5 272 53.7
MD15G1426900 Malus domestica HOM05D005239 ORTHO05D006698 4.0e-59 233.0 188 63.8
BcaB02g08828 Brassica carinata HOM05D005239 ORTHO05D006698 4.2e-53 213.0 234 52.6
SHI13675 Sapria himalayana HOM05D005239 ORTHO05D006698 5.7e-50 202.6 191 58.6
FAN24G3432 Fragaria x ananassa HOM05D005239 ORTHO05D006698 4.5e-47 193.0 204 58.3
Cfa027222 Carpinus fangiana HOM05D005239 ORTHO05D006698 2.1e-36 157.5 357 35.0
PGR004G1759 Punica granatum HOM05D005239 ORTHO05D006698 2.4e-32 144.1 121 66.1
TPR.G37315 Trifolium pratense HOM05D005239 ORTHO05D006698 3.5e-31 140.2 83 79.5
PSO081G0040 Papaver somniferum HOM05D005239 ORTHO05D006698 8.0e-28 129.0 84 75.0
Glyma.10G293300 Glycine max HOM05D005239 ORTHO05D006698 1.4e-27 128.3 76 77.6
RcHm_v2.0_Chr6g0271171 Rosa chinensis HOM05D005239 ORTHO05D006698 2.7e-23 114.0 71 77.5
RcHm_v2.0_Chr7g0200821 Rosa chinensis HOM05D005239 ORTHO05D006698 4.3e-21 106.7 71 73.2
CDE12G0056 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 5.6e-21 106.3 81 63.0
Cc02_g25970 Coffea canephora HOM05D005239 ORTHO05D006698 7.1e-16 89.4 99 51.5
SHI13676 Sapria himalayana HOM05D005239 ORTHO05D006698 3.6e-12 77.0 85 52.9
SEGI_27712 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 3.6e-12 77.0 57 63.2
MSTRG.17096 Avicennia marina HOM05D005239 ORTHO05D006698 6.0e-07 59.7 78 47.4


User provided reference genes

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