Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G060100 Manihot esculenta HOM05D005798 ORTHO05D007269 3.1e-237 824.7 403 100.0
CiPaw.13G020800 Carya illinoinensis HOM05D005798 ORTHO05D007269 2.2e-171 605.9 393 76.1
QL04p025438 Quercus lobata HOM05D005798 ORTHO05D007269 6.8e-168 594.3 391 75.4
Potri.001G346900 Populus trichocarpa HOM05D005798 ORTHO05D007269 2.6e-167 592.4 389 75.8
Sabra16G0226600 Salix brachista HOM05D005798 ORTHO05D007269 5.4e-165 584.7 389 74.8
Prupe.2G112300 Prunus persica HOM05D005798 ORTHO05D007269 1.2e-164 583.6 391 72.6
FvH4_1g25731 Fragaria vesca HOM05D005798 ORTHO05D007269 1.9e-162 576.2 391 71.1
Duzib128G1323 Durio zibethinus HOM05D005798 ORTHO05D007269 2.5e-162 575.9 391 72.6
FAN26G0835 Fragaria x ananassa HOM05D005798 ORTHO05D007269 2.5e-162 575.9 391 70.8
Thecc.10G001400 Theobroma cacao HOM05D005798 ORTHO05D007269 2.1e-161 572.8 391 72.4
FAN23G2651 Fragaria x ananassa HOM05D005798 ORTHO05D007269 3.6e-161 572.0 393 70.2
MD02G1227400 Malus domestica HOM05D005798 ORTHO05D007269 8.0e-161 570.9 391 71.1
Ciclev10020482m.g Citrus clementina HOM05D005798 ORTHO05D007269 1.0e-160 570.5 392 72.4
FAN28G0191 Fragaria x ananassa HOM05D005798 ORTHO05D007269 2.0e-159 566.2 391 69.8
MD07G1086000 Malus domestica HOM05D005798 ORTHO05D007269 2.0e-159 566.2 392 69.9
TWI59G0898 Tripterygium wilfordii HOM05D005798 ORTHO05D007269 2.0e-159 566.2 388 71.4
Atru.chr5.52 Acer truncatum HOM05D005798 ORTHO05D007269 2.6e-159 565.8 392 72.4
RcHm_v2.0_Chr1g0343251 Rosa chinensis HOM05D005798 ORTHO05D007269 2.6e-159 565.8 391 69.8
Atru.chr5.24 Acer truncatum HOM05D005798 ORTHO05D007269 4.4e-159 565.1 392 72.2
Cc02_g25760 Coffea canephora HOM05D005798 ORTHO05D007269 2.7e-156 555.8 389 68.1
CSS0042045 Camellia sinensis var. sinensis HOM05D005798 ORTHO05D007269 5.0e-155 551.6 390 70.3
Gorai.011G295600 Gossypium raimondii HOM05D005798 ORTHO05D007269 5.0e-155 551.6 391 71.1
Gohir.D10G254600 Gossypium hirsutum HOM05D005798 ORTHO05D007269 8.6e-155 550.8 391 70.6
vmacro21093 Vaccinium macrocarpon HOM05D005798 ORTHO05D007269 1.9e-154 549.7 390 71.3
Gohir.A10G242600 Gossypium hirsutum HOM05D005798 ORTHO05D007269 2.5e-154 549.3 391 71.1
CANSAT21G0894 Cannabis sativa HOM05D005798 ORTHO05D007269 3.4e-151 538.9 389 67.6
Lalb_Chr19g0126311 Lupinus albus HOM05D005798 ORTHO05D007269 4.9e-150 535.0 391 67.5
Nitab4.5_0013532g0010 Nicotiana tabacum HOM05D005798 ORTHO05D007269 1.4e-149 533.5 388 68.0
Peaxi162Scf01124g00121 Petunia axillaris HOM05D005798 ORTHO05D007269 3.2e-149 532.3 390 66.7
Nitab4.5_0009219g0010 Nicotiana tabacum HOM05D005798 ORTHO05D007269 4.1e-149 531.9 388 68.0
Medtr0103s0100 Medicago truncatula HOM05D005798 ORTHO05D007269 1.2e-148 530.4 389 65.8
MSTRG.20650 Avicennia marina HOM05D005798 ORTHO05D007269 1.6e-148 530.0 390 66.4
Glyma.04G128400 Glycine max HOM05D005798 ORTHO05D007269 2.0e-148 529.6 392 66.3
ClCG05G002770 Citrullus lanatus HOM05D005798 ORTHO05D007269 2.7e-148 529.3 388 66.2
CAN.G1480.2 Capsicum annuum HOM05D005798 ORTHO05D007269 7.8e-148 527.7 391 66.8
Glyma.06G310400 Glycine max HOM05D005798 ORTHO05D007269 7.8e-148 527.7 391 65.7
Lj1g0019008 Lotus japonicus HOM05D005798 ORTHO05D007269 1.0e-147 527.3 389 66.1
Hund17139 Selenicereus undatus HOM05D005798 ORTHO05D007269 1.3e-147 526.9 388 66.5
PGR004G1878 Punica granatum HOM05D005798 ORTHO05D007269 1.7e-147 526.6 390 66.7
MELO3C006251.2 Cucumis melo HOM05D005798 ORTHO05D007269 6.6e-147 524.6 389 66.6
PGR004G0434 Punica granatum HOM05D005798 ORTHO05D007269 1.9e-146 523.1 390 66.7
Phvul.005G016200 Phaseolus vulgaris HOM05D005798 ORTHO05D007269 3.3e-146 522.3 391 66.5
Solyc01g088390.3 Solanum lycopersicum HOM05D005798 ORTHO05D007269 3.3e-146 522.3 391 65.7
Sopen01g035220 Solanum pennellii HOM05D005798 ORTHO05D007269 5.6e-146 521.5 394 65.5
Nn2g10726 Nelumbo nucifera HOM05D005798 ORTHO05D007269 7.3e-146 521.2 390 65.1
Psat3g172680 Pisum sativum HOM05D005798 ORTHO05D007269 9.5e-146 520.8 393 65.1
Ca_03850_v3 Cicer arietinum L. HOM05D005798 ORTHO05D007269 2.8e-145 519.2 389 65.6
Sed0012756 Sechium edule HOM05D005798 ORTHO05D007269 3.6e-145 518.8 389 65.6
PGSC0003DMG400001703 Solanum tuberosum HOM05D005798 ORTHO05D007269 4.0e-144 515.4 391 65.7
EL10Ac8g19272 Beta vulgaris HOM05D005798 ORTHO05D007269 5.2e-144 515.0 386 64.5
Oeu024375.1 Olea europaea HOM05D005798 ORTHO05D007269 6.8e-144 514.6 375 65.3
Oeu024376.1 Olea europaea HOM05D005798 ORTHO05D007269 6.8e-144 514.6 375 65.3
arahy.Tifrunner.gnm1.ann1.1MA0KJ Arachis hypogaea HOM05D005798 ORTHO05D007269 8.9e-144 514.2 391 65.2
AUR62031252 Chenopodium quinoa HOM05D005798 ORTHO05D007269 1.5e-143 513.5 387 63.0
arahy.Tifrunner.gnm1.ann1.6FN2NF Arachis hypogaea HOM05D005798 ORTHO05D007269 4.4e-143 511.9 391 64.7
AUR62027448 Chenopodium quinoa HOM05D005798 ORTHO05D007269 5.8e-143 511.5 387 62.8
VMungo1080G0989 Vigna mungo HOM05D005798 ORTHO05D007269 2.9e-142 509.2 391 64.5
CsaV3_3G010280 Cucumis sativus L. HOM05D005798 ORTHO05D007269 3.7e-142 508.8 388 64.7
THA.LOC104817171 Tarenaya hassleriana HOM05D005798 ORTHO05D007269 1.4e-141 506.9 401 64.1
Sc26g0001830 Simmondsia chinensis HOM05D005798 ORTHO05D007269 1.0e-139 500.7 388 62.9
PSO017G1219 Papaver somniferum HOM05D005798 ORTHO05D007269 4.3e-138 495.4 397 62.2
PSO782G4885 Papaver somniferum HOM05D005798 ORTHO05D007269 1.2e-137 493.8 397 62.0
Eucgr.D01150 Eucalyptus grandis HOM05D005798 ORTHO05D007269 2.8e-137 492.7 388 62.9
Aa31LG1G26140 Aethionema arabicum HOM05D005798 ORTHO05D007269 8.1e-137 491.1 389 63.5
HanXRQChr16g0519531 Helianthus annuus HOM05D005798 ORTHO05D007269 5.2e-136 488.4 394 62.4
PSO063G7295 Papaver somniferum HOM05D005798 ORTHO05D007269 2.2e-134 483.0 407 60.2
Migut.B01472 Erythranthe guttata HOM05D005798 ORTHO05D007269 4.9e-134 481.9 394 62.2
AL4G43620 Arabidopsis lyrata HOM05D005798 ORTHO05D007269 3.2e-133 479.2 393 62.3
ECA234G4178 Erigeron canadensis HOM05D005798 ORTHO05D007269 1.6e-132 476.9 385 61.0
Sp4g26670 Schrenkiella parvula HOM05D005798 ORTHO05D007269 2.1e-132 476.5 391 61.6
AT2G44580 Arabidopsis thaliana HOM05D005798 ORTHO05D007269 7.8e-132 474.6 394 60.9
Carub.0004s2713 Capsella rubella HOM05D005798 ORTHO05D007269 3.9e-131 472.2 395 61.5
TPR.G30814 Trifolium pratense HOM05D005798 ORTHO05D007269 3.6e-129 465.7 344 66.9
Lj7C553T5 Lonicera japonica HOM05D005798 ORTHO05D007269 4.7e-129 465.3 395 61.5
MBI05_g22048_MAGBIO Magnolia biondii HOM05D005798 ORTHO05D007269 4.7e-129 465.3 388 58.5
BolC4t22185H Brassica oleracea HOM05D005798 ORTHO05D007269 5.2e-128 461.8 388 59.8
BcaC02g12292 Brassica carinata HOM05D005798 ORTHO05D007269 2.6e-127 459.5 390 59.5
C04p05550 Brassica napus HOM05D005798 ORTHO05D007269 2.6e-127 459.5 390 59.5
CARHR139800 Cardamine hirsuta HOM05D005798 ORTHO05D007269 2.6e-127 459.5 384 60.9
BcaB02g08835 Brassica carinata HOM05D005798 ORTHO05D007269 3.4e-127 459.1 387 59.7
BraA05t19450Z Brassica rapa HOM05D005798 ORTHO05D007269 5.8e-127 458.4 390 59.7
A05p04740 Brassica napus HOM05D005798 ORTHO05D007269 9.9e-127 457.6 390 59.5
Ah.14g086050 Amaranthus hybridus HOM05D005798 ORTHO05D007269 8.4e-126 454.5 390 59.2
unitig_52.g17377 Utricularia gibba HOM05D005798 ORTHO05D007269 2.1e-124 449.9 393 58.3
COL.COLO4_19318 Corchorus olitorius HOM05D005798 ORTHO05D007269 1.1e-122 444.1 313 70.3
Thhalv10001723m.g Eutrema salsugineum HOM05D005798 ORTHO05D007269 1.2e-119 434.1 368 60.6
Os05g0119600 Oryza sativa ssp. japonica HOM05D005798 ORTHO05D007269 1.1e-117 427.6 378 56.3
Zm00001eb112030 Zea mays HOM05D005798 ORTHO05D007269 4.2e-117 425.6 393 55.5
HPP92_011679 Vanilla planifolia HOM05D005798 ORTHO05D007269 3.5e-116 422.5 392 55.6
SEGI_02869 Sequoiadendron giganteum HOM05D005798 ORTHO05D007269 3.0e-115 419.5 394 52.0
Actinidia33294 Actinidia chinensis HOM05D005798 ORTHO05D007269 2.8e-113 412.9 357 60.8
Nn1g00612 Nelumbo nucifera HOM05D005798 ORTHO05D007269 1.3e-110 404.1 276 68.5
CDE06G2636 Ceratophyllum demersum HOM05D005798 ORTHO05D007269 1.7e-110 403.7 362 56.4
SGA_v2.0_scaffold17G08178 Striga asiatica HOM05D005798 ORTHO05D007269 4.8e-105 385.6 352 56.8
Dinv43575 Davidia involucrata HOM05D005798 ORTHO05D007269 1.0e-99 367.9 263 71.1
Rhsim01G0145000 Rhododendron simsii HOM05D005798 ORTHO05D007269 1.8e-99 367.1 380 52.6
Cpa.g.sc3387.1 Carica papaya HOM05D005798 ORTHO05D007269 4.8e-97 359.0 238 72.3
ATR0585G014 Amborella trichopoda HOM05D005798 ORTHO05D007269 2.4e-96 356.7 393 48.3
TAR375G0847 Trochodendron aralioides HOM05D005798 ORTHO05D007269 9.0e-96 354.8 257 69.3
Pp3c5_22720 Physcomitrium patens HOM05D005798 ORTHO05D007269 8.7e-91 338.2 393 42.7
AagrBONN_evm.TU.Sc2ySwM_344.2100 Anthoceros agrestis HOM05D005798 ORTHO05D007269 1.7e-86 323.9 380 44.7
GSVIVG01018417001 Vitis vinifera HOM05D005798 ORTHO05D007269 3.9e-83 312.8 192 78.6
Mapoly0001s0452 Marchantia polymorpha HOM05D005798 ORTHO05D007269 4.3e-82 309.3 400 41.8
Lsat_1_v5_gn_4_46040 Lactuca sativa HOM05D005798 ORTHO05D007269 9.4e-69 265.0 193 65.8
Nn3g19112 Nelumbo nucifera HOM05D005798 ORTHO05D007269 3.3e-66 256.5 242 52.9
Actinidia21608 Actinidia chinensis HOM05D005798 ORTHO05D007269 7.4e-66 255.4 162 74.1
Nn1g07358 Nelumbo nucifera HOM05D005798 ORTHO05D007269 7.0e-64 248.8 191 66.0
Haze_02923 Corylus avellana HOM05D005798 ORTHO05D007269 7.5e-58 228.8 188 66.0
Peaxi162Scf00417g00029 Petunia axillaris HOM05D005798 ORTHO05D007269 3.1e-56 223.4 233 49.4
Prupe.2G112400 Prunus persica HOM05D005798 ORTHO05D007269 7.0e-56 222.2 201 60.7
Nn3g19416 Nelumbo nucifera HOM05D005798 ORTHO05D007269 1.9e-53 214.2 162 64.2
GSVIVG01018418001 Vitis vinifera HOM05D005798 ORTHO05D007269 2.6e-50 203.8 145 71.7
Atru.chr5.133 Acer truncatum HOM05D005798 ORTHO05D007269 7.0e-48 195.7 154 66.2
Prupe.2G112500 Prunus persica HOM05D005798 ORTHO05D007269 4.5e-47 193.0 144 67.4
Dinv43574 Davidia involucrata HOM05D005798 ORTHO05D007269 1.3e-46 191.4 109 81.7
CBR_g39622 Chara braunii HOM05D000017 ORTHO05D000013 9.5e-45 185.3 427 32.6
Nn1g07357 Nelumbo nucifera HOM05D005798 ORTHO05D007269 3.6e-44 183.3 135 61.5
CAN.G195.32 Capsicum annuum HOM05D005798 ORTHO05D007269 1.7e-41 174.5 169 51.5
Cre16.g684155 Chlamydomonas reinhardtii HOM05D005798 ORTHO05D007269 4.1e-40 169.9 413 28.8
Atru.chr5.134 Acer truncatum HOM05D005798 ORTHO05D007269 2.3e-38 164.1 93 82.8
HanXRQChr12g0366931 Helianthus annuus HOM05D005798 ORTHO05D007269 9.5e-37 158.7 237 38.8
CAN.G74.39 Capsicum annuum HOM05D005798 ORTHO05D007269 6.8e-35 152.5 139 60.4
PRCOL_00005399 Prasinoderma coloniale HOM05D005798 ORTHO05D007269 8.3e-33 145.6 369 31.7
Nn3g19415 Nelumbo nucifera HOM05D005798 ORTHO05D007269 5.4e-32 142.9 91 75.8
CAN.G74.38 Capsicum annuum HOM05D005798 ORTHO05D007269 5.0e-30 136.3 93 75.3
MCO12G177 Micromonas commoda HOM05D005798 ORTHO05D007269 1.9e-21 107.8 252 31.0
HPP92_011700 Vanilla planifolia HOM05D005798 ORTHO05D007269 1.9e-21 107.8 231 33.3
EL10Ac6g13432 Beta vulgaris HOM05D005798 ORTHO05D007269 2.1e-20 104.4 85 56.5
HanXRQChr07g0198081 Helianthus annuus HOM05D005798 ORTHO05D007269 3.6e-20 103.6 284 29.9
TAR375G0441 Trochodendron aralioides HOM05D005798 ORTHO05D007269 5.1e-14 83.2 54 72.2
MBI14_g08084_MAGBIO Magnolia biondii HOM05D005798 ORTHO05D007269 1.6e-12 78.2 84 47.6
HanXRQChr11g0349311 Helianthus annuus HOM05D000428 ORTHO05D011602 1.9e-08 64.7 79 49.4
CAN.G195.33 Capsicum annuum HOM05D005798 ORTHO05D007269 2.7e-07 60.8 72 52.8


User provided reference genes

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