Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G055800 Manihot esculenta HOM05D006344 ORTHO05D007744 1.0e-298 1029.2 503 100.0
Potri.002G138600 Populus trichocarpa HOM05D006344 ORTHO05D007744 8.3e-216 753.8 504 74.8
Sabra02G0107400 Salix brachista HOM05D006344 ORTHO05D007744 9.8e-209 730.3 526 70.2
arahy.Tifrunner.gnm1.ann1.6KIV37 Arachis hypogaea HOM05D006344 ORTHO05D007744 7.8e-198 694.1 449 74.6
Prupe.2G133500 Prunus persica HOM05D006344 ORTHO05D007744 1.3e-197 693.3 510 69.8
arahy.Tifrunner.gnm1.ann1.7K9T15 Arachis hypogaea HOM05D006344 ORTHO05D007744 1.7e-197 693.0 449 74.4
Cfa011061 Carpinus fangiana HOM05D006344 ORTHO05D007744 9.6e-196 687.2 509 69.5
MD07G1109900 Malus domestica HOM05D006344 ORTHO05D007744 2.1e-195 686.0 509 69.0
Haze_02860 Corylus avellana HOM05D006344 ORTHO05D007744 3.6e-195 685.3 509 69.5
Glyma.12G152700 Glycine max HOM05D006344 ORTHO05D007744 3.4e-193 678.7 482 70.1
QL04p029920 Quercus lobata HOM05D006344 ORTHO05D007744 3.4e-193 678.7 508 67.1
VMungo0331G0733 Vigna mungo HOM05D006344 ORTHO05D007744 3.4e-193 678.7 498 66.5
Gohir.A12G097600 Gossypium hirsutum HOM05D006344 ORTHO05D007744 3.8e-192 675.2 506 67.6
Phvul.010G046700 Phaseolus vulgaris HOM05D006344 ORTHO05D007744 9.3e-191 670.6 501 66.7
Gohir.D12G100600 Gossypium hirsutum HOM05D006344 ORTHO05D007744 1.6e-190 669.8 507 67.1
CSS0047635 Camellia sinensis var. sinensis HOM05D006344 ORTHO05D007744 7.8e-190 667.5 520 67.1
Thecc.01G396400 Theobroma cacao HOM05D006344 ORTHO05D007744 2.3e-189 666.0 510 67.1
TWI23G1150 Tripterygium wilfordii HOM05D006344 ORTHO05D007744 3.0e-189 665.6 503 67.0
Gorai.008G109500 Gossypium raimondii HOM05D006344 ORTHO05D007744 6.6e-189 664.5 505 67.1
Lj3g0017960 Lotus japonicus HOM05D006344 ORTHO05D007744 1.9e-188 662.9 504 66.5
Eucgr.D01222 Eucalyptus grandis HOM05D006344 ORTHO05D007744 2.5e-188 662.5 439 72.9
Glyma.06G240000 Glycine max HOM05D006344 ORTHO05D007744 7.3e-188 661.0 504 66.3
CSS0005629 Camellia sinensis var. sinensis HOM05D006344 ORTHO05D007744 9.6e-188 660.6 531 65.3
Ciclev10019814m.g Citrus clementina HOM05D006344 ORTHO05D007744 2.1e-187 659.4 495 68.1
Lalb_Chr12g0210531 Lupinus albus HOM05D006344 ORTHO05D007744 2.8e-187 659.1 476 68.1
Ca_14805_v3 Cicer arietinum L. HOM05D006344 ORTHO05D007744 2.4e-186 656.0 488 66.2
Nn1g00813 Nelumbo nucifera HOM05D006344 ORTHO05D007744 3.1e-186 655.6 510 66.3
CANSAT25G2006 Cannabis sativa HOM05D006344 ORTHO05D007744 5.3e-186 654.8 488 66.6
Cc02_g25170 Coffea canephora HOM05D006344 ORTHO05D007744 2.2e-184 649.4 512 64.5
Duzib138G0679 Durio zibethinus HOM05D006344 ORTHO05D007744 8.4e-184 647.5 525 64.6
TPR.G32142 Trifolium pratense HOM05D006344 ORTHO05D007744 1.4e-183 646.7 503 65.4
Duzib133G0621 Durio zibethinus HOM05D006344 ORTHO05D007744 2.4e-183 646.0 509 65.2
MELO3C005945.2 Cucumis melo HOM05D006344 ORTHO05D007744 7.1e-183 644.4 499 65.5
Medtr8g007155 Medicago truncatula HOM05D006344 ORTHO05D007744 2.1e-182 642.9 519 64.5
Aqoxy3G02683 Aquilegia oxysepala HOM05D006344 ORTHO05D007744 6.7e-181 637.9 431 72.4
THA.LOC104802498 Tarenaya hassleriana HOM05D006344 ORTHO05D007744 2.5e-180 636.0 518 62.9
vmacro13505 Vaccinium macrocarpon HOM05D006344 ORTHO05D007744 9.6e-180 634.0 504 64.7
FAN10G1159 Fragaria x ananassa HOM05D006344 ORTHO05D007744 3.7e-179 632.1 507 63.7
SGA_v2.0_scaffold52G19234 Striga asiatica HOM05D006344 ORTHO05D007744 4.8e-179 631.7 501 63.7
FvH4_7g10380 Fragaria vesca HOM05D006344 ORTHO05D007744 6.2e-179 631.3 507 63.1
FAN06G2435 Fragaria x ananassa HOM05D006344 ORTHO05D007744 6.2e-179 631.3 507 63.1
FAN10G0415 Fragaria x ananassa HOM05D006344 ORTHO05D007744 1.8e-178 629.8 507 63.7
TAR375G1150 Trochodendron aralioides HOM05D006344 ORTHO05D007744 4.0e-178 628.6 511 65.8
Oeu011251.1 Olea europaea HOM05D006344 ORTHO05D007744 1.2e-177 627.1 540 61.1
Dinv44052 Davidia involucrata HOM05D006344 ORTHO05D007744 2.0e-177 626.3 382 79.1
FAN06G3766 Fragaria x ananassa HOM05D006344 ORTHO05D007744 2.0e-177 626.3 506 63.4
RcHm_v2.0_Chr1g0348081 Rosa chinensis HOM05D006344 ORTHO05D007744 2.6e-177 625.9 438 69.9
Sopen10g011810 Solanum pennellii HOM05D006344 ORTHO05D007744 2.2e-176 622.9 467 67.2
GSVIVG01018294001 Vitis vinifera HOM05D006344 ORTHO05D007744 1.9e-175 619.8 383 76.8
FAN01G1631 Fragaria x ananassa HOM05D006344 ORTHO05D007744 4.2e-175 618.6 506 63.0
PSO782G2130 Papaver somniferum HOM05D006344 ORTHO05D007744 1.6e-174 616.7 446 67.7
CiPaw.14G019800 Carya illinoinensis HOM05D006344 ORTHO05D007744 4.6e-174 615.1 491 65.4
EL10Ac1g00751 Beta vulgaris HOM05D006344 ORTHO05D007744 1.8e-173 613.2 512 61.5
Migut.B01523 Erythranthe guttata HOM05D006344 ORTHO05D007744 1.8e-173 613.2 508 62.6
Psat4g223640 Pisum sativum HOM05D006344 ORTHO05D007744 5.1e-173 611.7 492 63.2
Sc26g0001660 Simmondsia chinensis HOM05D006344 ORTHO05D007744 3.3e-172 609.0 426 70.4
MSTRG.20684 Avicennia marina HOM05D006344 ORTHO05D007744 7.4e-172 607.8 437 67.5
FAN03G0097 Fragaria x ananassa HOM05D006344 ORTHO05D007744 9.6e-172 607.4 556 57.9
SalBow8G3479 Salvia bowleyana HOM05D006344 ORTHO05D007744 1.6e-171 606.7 539 59.7
Thhalv10001417m.g Eutrema salsugineum HOM05D006344 ORTHO05D007744 2.1e-171 606.3 514 61.1
AUR62013752 Chenopodium quinoa HOM05D006344 ORTHO05D007744 4.8e-171 605.1 496 61.9
AUR62023399 Chenopodium quinoa HOM05D006344 ORTHO05D007744 1.5e-169 600.1 445 66.3
Hund17097 Selenicereus undatus HOM05D006344 ORTHO05D007744 1.5e-169 600.1 444 67.1
Sp4g26830 Schrenkiella parvula HOM05D006344 ORTHO05D007744 1.3e-168 597.0 511 60.5
HanXRQChr17g0562521 Helianthus annuus HOM05D006344 ORTHO05D007744 3.8e-168 595.5 451 66.1
ECA234G3853 Erigeron canadensis HOM05D006344 ORTHO05D007744 1.1e-167 594.0 458 64.4
A05p04940 Brassica napus HOM05D006344 ORTHO05D007744 2.1e-166 589.7 442 65.8
Nitab4.5_0000228g0070 Nicotiana tabacum HOM05D006344 ORTHO05D007744 3.5e-166 589.0 544 57.2
ATR0665G564 Amborella trichopoda HOM05D006344 ORTHO05D007744 3.9e-165 585.5 434 67.1
AL4G43840 Arabidopsis lyrata HOM05D006344 ORTHO05D007744 1.1e-164 583.9 519 60.3
Lsat_1_v5_gn_4_39300 Lactuca sativa HOM05D006344 ORTHO05D007744 1.1e-164 583.9 456 65.4
ClCG05G000130 Citrullus lanatus HOM05D006344 ORTHO05D007744 3.3e-164 582.4 491 61.1
C04p05760 Brassica napus HOM05D006344 ORTHO05D007744 1.6e-163 580.1 511 60.1
BcaB02g08857 Brassica carinata HOM05D006344 ORTHO05D007744 2.1e-163 579.7 442 65.2
AT2G44760 Arabidopsis thaliana HOM05D006344 ORTHO05D007744 3.7e-163 578.9 510 60.6
CARHR139980 Cardamine hirsuta HOM05D006344 ORTHO05D007744 3.7e-163 578.9 514 58.9
BraA05t19467Z Brassica rapa HOM05D006344 ORTHO05D007744 4.8e-163 578.6 443 64.8
Rhsim07G0037100 Rhododendron simsii HOM05D006344 ORTHO05D007744 3.1e-162 575.9 469 64.2
BcaC02g12272 Brassica carinata HOM05D006344 ORTHO05D007744 5.3e-162 575.1 508 59.4
BolC4t22205H Brassica oleracea HOM05D006344 ORTHO05D007744 5.3e-162 575.1 508 59.4
Aa31LG1G26310 Aethionema arabicum HOM05D006344 ORTHO05D007744 2.6e-161 572.8 542 55.4
COL.COLO4_12394 Corchorus olitorius HOM05D006344 ORTHO05D007744 7.6e-161 571.2 366 74.0
unitig_0.g1343 Utricularia gibba HOM05D006344 ORTHO05D007744 2.2e-160 569.7 449 63.3
Carub.0004s2733 Capsella rubella HOM05D006344 ORTHO05D007744 1.8e-157 560.1 513 58.1
CsaV3_3G007240 Cucumis sativus L. HOM05D006344 ORTHO05D007744 3.3e-156 555.8 699 46.8
PGR004G1920 Punica granatum HOM05D006344 ORTHO05D007744 1.1e-154 550.8 440 63.2
DCAR_025059 Daucus carota HOM05D006344 ORTHO05D007744 6.9e-154 548.1 447 61.1
COL.COLO4_10415 Corchorus olitorius HOM05D006344 ORTHO05D007744 2.6e-153 546.2 508 57.1
HPP92_012970 Vanilla planifolia HOM05D006344 ORTHO05D007744 1.4e-151 540.4 429 62.9
Actinidia18353 Actinidia chinensis HOM05D006344 ORTHO05D007744 9.4e-151 537.7 416 67.1
Zm00001eb427880 Zea mays HOM05D006344 ORTHO05D007744 9.4e-151 537.7 452 60.0
Sed0012570 Sechium edule HOM05D006344 ORTHO05D007744 4.6e-150 535.4 448 61.6
Cpa.g.sc22.25 Carica papaya HOM05D006344 ORTHO05D007744 7.4e-148 528.1 382 68.3
Os04g0545200 Oryza sativa ssp. japonica HOM05D006344 ORTHO05D007744 5.3e-146 521.9 440 59.1
CDE06G1994 Ceratophyllum demersum HOM05D006344 ORTHO05D007744 4.5e-145 518.8 472 56.8
Nitab4.5_0009461g0020 Nicotiana tabacum HOM05D006344 ORTHO05D007744 6.1e-118 428.7 335 62.4
Lj9C555G1 Lonicera japonica HOM05D006344 ORTHO05D007744 2.0e-116 423.7 255 76.5
Atru.chr5.116 Acer truncatum HOM05D006344 ORTHO05D007744 7.5e-100 368.6 237 74.7
Peaxi162Scf00103g00911 Petunia axillaris HOM05D006344 ORTHO05D007744 8.3e-91 338.6 190 78.4
Peaxi162Scf00103g00912 Petunia axillaris HOM05D006344 ORTHO05D007744 2.4e-82 310.5 316 56.0
Solyc10g037890.3 Solanum lycopersicum HOM05D006344 ORTHO05D007744 1.6e-81 307.8 179 78.2
PGSC0003DMG400026373 Solanum tuberosum HOM05D006344 ORTHO05D007744 1.2e-78 298.1 312 52.6
Solyc10g037900.1 Solanum lycopersicum HOM05D006344 ORTHO05D007744 2.6e-76 290.4 310 53.5
CAN.G768.2 Capsicum annuum HOM05D006344 ORTHO05D007744 9.9e-76 288.5 320 54.7
Pp3c5_3810 Physcomitrium patens HOM05D006344 ORTHO05D007744 3.5e-73 280.0 564 33.7
SEGI_37248 Sequoiadendron giganteum HOM05D006344 ORTHO05D007744 1.1e-71 275.0 223 56.1
PGSC0003DMG400003447 Solanum tuberosum HOM05D006344 ORTHO05D007744 3.6e-70 270.0 159 76.1
Atru.chr5.115 Acer truncatum HOM05D006344 ORTHO05D007744 2.4e-61 240.7 246 55.3
AagrBONN_evm.TU.Sc2ySwM_117.1538 Anthoceros agrestis HOM05D006344 ORTHO05D007744 2.0e-60 237.7 599 31.1
Mapoly0089s0048 Marchantia polymorpha HOM05D006344 ORTHO05D007744 4.9e-59 233.0 592 30.4
SMO340G0133 Selaginella moellendorffii HOM05D002542 ORTHO05D007744 3.3e-55 220.3 448 31.9
SMO356G0573 Selaginella moellendorffii HOM05D002542 ORTHO05D005078 5.1e-40 169.9 361 31.0
Lj9A555T32 Lonicera japonica HOM05D006344 ORTHO05D007744 6.3e-38 162.9 121 66.1
SEGI_14599 Sequoiadendron giganteum HOM05D006344 ORTHO05D007744 6.9e-37 159.5 188 48.4
SEGI_30390 Sequoiadendron giganteum HOM05D006344 ORTHO05D007744 2.9e-27 127.5 103 59.2
HanXRQChr09g0257941 Helianthus annuus HOM05D006344 ORTHO05D007744 2.7e-25 120.9 109 59.6
Actinidia26517 Actinidia chinensis HOM05D006344 ORTHO05D007744 2.6e-23 114.4 60 83.3
Peaxi162Scf00562g00069 Petunia axillaris HOM05D006344 ORTHO05D007744 5.5e-18 96.7 128 45.3
CDE06G0422 Ceratophyllum demersum HOM05D006344 ORTHO05D007744 2.1e-17 94.7 58 72.4
CBR_g48168 Chara braunii HOM05D006344 ORTHO05D007744 3.7e-14 84.0 158 34.8
Peaxi162Scf00562g00611 Petunia axillaris HOM05D006344 ORTHO05D007744 2.7e-12 77.8 85 55.3
Cre16.g684900 Chlamydomonas reinhardtii HOM05D006344 ORTHO05D007744 5.9e-12 76.6 275 25.8
COL.COLO4_10413 Corchorus olitorius HOM05D006344 ORTHO05D007744 1.6e-09 68.6 75 52.0
BcaB08g35012 Brassica carinata HOM05D006344 ORTHO05D007744 2.1e-09 68.2 39 71.8
CBR_g48169 Chara braunii HOM05D006344 ORTHO05D007744 4.7e-09 67.0 162 29.0
HanXRQChr01g0015371 Helianthus annuus HOM05D000263 ORTHO05D000213 3.0e-08 64.3 41 65.9


User provided reference genes

Program Settings