Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G048800 Manihot esculenta HOM05D007090 ORTHO05D008993 1.9e-122 443.0 301 100.0
Potri.014G060700 Populus trichocarpa HOM05D007090 ORTHO05D008993 7.8e-68 261.5 257 64.2
Gohir.D11G083500 Gossypium hirsutum HOM05D007090 ORTHO05D008993 5.6e-58 228.8 266 64.7
Thecc.01G382600 Theobroma cacao HOM05D007090 ORTHO05D008993 5.2e-56 222.2 266 58.3
Sabra14G0044500 Salix brachista HOM05D007090 ORTHO05D008993 3.4e-55 219.5 257 58.8
COL.COLO4_12490 Corchorus olitorius HOM05D007090 ORTHO05D008993 2.2e-54 216.9 272 65.1
Sc26g0001310 Simmondsia chinensis HOM05D007090 ORTHO05D008993 4.1e-53 212.6 307 50.2
CANSAT56G0199 Cannabis sativa HOM05D007090 ORTHO05D008993 1.0e-51 208.0 274 54.4
CANSAT56G4322 Cannabis sativa HOM05D007090 ORTHO05D008993 5.1e-51 205.7 260 55.8
Atru.chr5.252 Acer truncatum HOM05D007090 ORTHO05D008993 8.6e-51 204.9 301 59.5
TAR375G0613 Trochodendron aralioides HOM05D007090 ORTHO05D008993 8.6e-51 204.9 279 48.7
TPR.G4946 Trifolium pratense HOM05D007090 ORTHO05D008993 2.5e-50 203.4 263 60.8
Cc02_g24410 Coffea canephora HOM05D007090 ORTHO05D008993 1.4e-48 197.6 278 51.4
Duzib138G0673 Durio zibethinus HOM05D007090 ORTHO05D008993 1.2e-47 194.5 267 53.6
Gorai.007G089100 Gossypium raimondii HOM05D007090 ORTHO05D008993 1.2e-47 194.5 266 59.8
Lalb_Chr12g0207911 Lupinus albus HOM05D007090 ORTHO05D008993 1.2e-47 194.5 263 49.4
CiPaw.13G032600 Carya illinoinensis HOM05D007090 ORTHO05D008993 1.3e-46 191.0 290 43.8
VMungo0331G0297 Vigna mungo HOM05D007090 ORTHO05D008993 2.9e-46 189.9 309 52.8
Prupe.2G138200 Prunus persica HOM05D007090 ORTHO05D008993 3.7e-46 189.5 268 56.0
RcHm_v2.0_Chr1g0349121 Rosa chinensis HOM05D007090 ORTHO05D008993 3.7e-46 189.5 268 60.4
vmacro13441 Vaccinium macrocarpon HOM05D007090 ORTHO05D008993 3.7e-46 189.5 355 38.9
Eucgr.E01513 Eucalyptus grandis HOM05D007090 ORTHO05D008993 1.4e-45 187.6 274 52.2
Medtr4g026500 Medicago truncatula HOM05D007090 ORTHO05D008993 1.4e-45 187.6 311 54.3
Glyma.03G032000 Glycine max HOM05D007090 ORTHO05D008993 1.9e-45 187.2 305 55.1
MSTRG.4910 Avicennia marina HOM05D007090 ORTHO05D008993 3.2e-45 186.4 326 47.9
QL04p038719 Quercus lobata HOM05D007090 ORTHO05D008993 3.2e-45 186.4 271 51.7
Nitab4.5_0000859g0240 Nicotiana tabacum HOM05D007090 ORTHO05D008993 5.4e-45 185.7 283 41.7
PGR042G2604 Punica granatum HOM05D007090 ORTHO05D008993 1.6e-44 184.1 262 47.7
Lj3g0011300 Lotus japonicus HOM05D007090 ORTHO05D008993 1.0e-43 181.4 263 51.3
Hund17045 Selenicereus undatus HOM05D007090 ORTHO05D008993 1.3e-43 181.0 261 47.9
Migut.N01613 Erythranthe guttata HOM05D007090 ORTHO05D008993 1.7e-43 180.6 256 49.6
Lsat_1_v5_gn_4_45521 Lactuca sativa HOM05D007090 ORTHO05D008993 3.0e-43 179.9 285 43.2
Ca_19835_v3 Cicer arietinum L. HOM05D007090 ORTHO05D008993 5.1e-43 179.1 269 56.9
FAN10G1641 Fragaria x ananassa HOM05D007090 ORTHO05D008993 6.6e-43 178.7 270 57.4
Ciclev10021511m.g Citrus clementina HOM05D007090 ORTHO05D008993 1.1e-42 177.9 266 50.8
arahy.Tifrunner.gnm1.ann1.UP4D5N Arachis hypogaea HOM05D007090 ORTHO05D008993 1.5e-42 177.6 274 50.7
Psat7g236160 Pisum sativum HOM05D007090 ORTHO05D008993 1.9e-42 177.2 274 55.8
GSVIVG01027682001 Vitis vinifera HOM05D007090 ORTHO05D008993 4.3e-42 176.0 282 47.9
HanXRQChr03g0088131 Helianthus annuus HOM05D007090 ORTHO05D008993 2.1e-41 173.7 274 50.0
vmacro22435 Vaccinium macrocarpon HOM05D007090 ORTHO05D008993 2.1e-41 173.7 160 56.9
MD02G1210400 Malus domestica HOM05D007090 ORTHO05D008993 2.8e-41 173.3 253 56.1
PSO782G4184 Papaver somniferum HOM05D007090 ORTHO05D008993 2.8e-41 173.3 269 40.1
THA.LOC104803743 Tarenaya hassleriana HOM05D007090 ORTHO05D008993 3.6e-41 172.9 265 50.6
Phvul.010G072500 Phaseolus vulgaris HOM05D007090 ORTHO05D008993 4.7e-41 172.6 266 53.0
FvH4_7g11100 Fragaria vesca HOM05D007090 ORTHO05D008993 1.8e-40 170.6 255 60.4
arahy.Tifrunner.gnm1.ann1.KQM8V4 Arachis hypogaea HOM05D007090 ORTHO05D008993 8.9e-40 168.3 252 48.4
SalBow5G5305 Salvia bowleyana HOM05D007090 ORTHO05D008993 8.9e-40 168.3 304 46.4
PSO063G1752 Papaver somniferum HOM05D007090 ORTHO05D008993 1.2e-39 167.9 275 38.9
SGA_v2.0_scaffold11G05536 Striga asiatica HOM05D007090 ORTHO05D008993 1.5e-39 167.5 142 55.6
Actinidia22817 Actinidia chinensis HOM05D007090 ORTHO05D008993 2.2e-38 163.7 264 50.8
FAN06G0781 Fragaria x ananassa HOM05D007090 ORTHO05D008993 2.9e-38 163.3 263 58.6
Oeu051923.2 Olea europaea HOM05D007090 ORTHO05D008993 4.9e-38 162.5 284 43.7
AT1G73440 Arabidopsis thaliana HOM05D007090 ORTHO05D008993 6.4e-38 162.2 254 48.8
Actinidia22762 Actinidia chinensis HOM05D007090 ORTHO05D008993 1.1e-37 161.4 256 51.6
DCAR_015886 Daucus carota HOM05D007090 ORTHO05D008993 1.4e-37 161.0 256 49.2
Ah.08g212650 Amaranthus hybridus HOM05D007090 ORTHO05D008993 1.9e-37 160.6 266 50.8
CSS0011917 Camellia sinensis var. sinensis HOM05D007090 ORTHO05D008993 1.9e-37 160.6 188 49.5
Nn1g01037 Nelumbo nucifera HOM05D007090 ORTHO05D008993 2.4e-37 160.2 272 45.6
Dinv44119 Davidia involucrata HOM05D007090 ORTHO05D008993 1.6e-36 157.5 254 57.9
Thhalv10028898m.g Eutrema salsugineum HOM05D007090 ORTHO05D008993 1.6e-36 157.5 259 44.0
Haze_02682 Corylus avellana HOM05D007090 ORTHO05D008993 2.1e-36 157.1 276 47.8
Aa31LG5G170 Aethionema arabicum HOM05D007090 ORTHO05D008993 2.7e-36 156.8 259 39.0
CsaV3_6G008990 Cucumis sativus L. HOM05D007090 ORTHO05D008993 3.5e-36 156.4 266 44.0
Sp6g00210 Schrenkiella parvula HOM05D007090 ORTHO05D008993 3.5e-36 156.4 256 41.8
Aqoxy5G03901 Aquilegia oxysepala HOM05D007090 ORTHO05D008993 1.0e-35 154.8 267 56.9
Hma1.2p1_0005F.1_g004490 Hydrangea macrophylla HOM05D007090 ORTHO05D008993 2.3e-35 153.7 279 47.7
TWI23G0238 Tripterygium wilfordii HOM05D007090 ORTHO05D008993 3.0e-35 153.3 276 38.4
FAN10G4025 Fragaria x ananassa HOM05D007090 ORTHO05D008993 5.1e-35 152.5 147 55.8
Rhsim07G0031100 Rhododendron simsii HOM05D007090 ORTHO05D008993 5.1e-35 152.5 320 41.6
Carub.0006s3709 Capsella rubella HOM05D007090 ORTHO05D008993 7.3e-34 148.7 265 48.7
FAN06G2008 Fragaria x ananassa HOM05D007090 ORTHO05D008993 1.6e-33 147.5 262 56.9
FAN01G0616 Fragaria x ananassa HOM05D007090 ORTHO05D008993 1.1e-32 144.8 328 45.1
Os04g0534300 Oryza sativa ssp. japonica HOM05D007090 ORTHO05D008993 1.4e-32 144.4 271 46.9
FAN03G3027 Fragaria x ananassa HOM05D007090 ORTHO05D008993 2.4e-32 143.7 353 38.8
AL6G53360 Arabidopsis lyrata HOM05D007090 ORTHO05D008993 5.3e-32 142.5 258 43.4
Sopen01g036660 Solanum pennellii HOM05D007090 ORTHO05D008993 7.6e-31 138.7 292 35.3
CARHR248180 Cardamine hirsuta HOM05D007090 ORTHO05D008993 1.3e-30 137.9 255 49.0
Solyc01g090920.3 Solanum lycopersicum HOM05D007090 ORTHO05D008993 1.3e-30 137.9 302 34.4
BcaB01g02215 Brassica carinata HOM05D007090 ORTHO05D008993 2.2e-30 137.1 254 52.8
unitig_748.g7116 Utricularia gibba HOM05D007090 ORTHO05D008993 1.1e-29 134.8 252 36.1
Gohir.A11G078900 Gossypium hirsutum HOM05D007090 ORTHO05D008993 2.4e-29 133.7 203 56.2
EL10Ac1g00840 Beta vulgaris HOM05D007090 ORTHO05D008993 4.2e-29 132.9 158 49.4
CAN.G1469.17 Capsicum annuum HOM05D007090 ORTHO05D008993 1.2e-28 131.3 335 33.7
Peaxi162Scf00803g00118 Petunia axillaris HOM05D007090 ORTHO05D008993 1.2e-28 131.3 162 46.9
Eucgr.E01517 Eucalyptus grandis HOM05D007090 ORTHO05D008993 6.0e-28 129.0 77 75.3
ECA234G0545 Erigeron canadensis HOM05D007090 ORTHO05D008993 7.8e-28 128.6 273 45.8
CSS0004451 Camellia sinensis var. sinensis HOM05D007090 ORTHO05D008993 2.5e-26 123.6 160 46.2
Nitab4.5_0008963g0010 Nicotiana tabacum HOM05D007090 ORTHO05D008993 1.6e-25 120.9 255 34.5
C09p00130 Brassica napus HOM05D007090 ORTHO05D008993 2.8e-25 120.2 252 46.0
BraA09t35687Z Brassica rapa HOM05D007090 ORTHO05D008993 2.8e-25 120.2 252 46.0
A09p00730 Brassica napus HOM05D007090 ORTHO05D008993 4.8e-25 119.4 251 47.0
PGSC0003DMG400025974 Solanum tuberosum HOM05D007090 ORTHO05D008993 4.0e-24 116.3 339 37.5
ClCG06G002820 Citrullus lanatus HOM05D007090 ORTHO05D008993 6.9e-24 115.5 279 35.1
BcaC04g24200 Brassica carinata HOM05D007090 ORTHO05D008993 1.5e-23 114.4 122 49.2
BolC9t52948H Brassica oleracea HOM05D007090 ORTHO05D008993 1.5e-23 114.4 122 49.2
ATR0317G013 Amborella trichopoda HOM05D007090 ORTHO05D008993 5.8e-23 112.5 140 43.6
CDE04G3442 Ceratophyllum demersum HOM05D007090 ORTHO05D008993 7.6e-23 112.1 272 32.0
Sed0010456 Sechium edule HOM05D007090 ORTHO05D008993 1.3e-22 111.3 260 38.1
MELO3C022245.2 Cucumis melo HOM05D007090 ORTHO05D008993 6.4e-22 109.0 259 40.9
Pp3c13_5390 Physcomitrium patens HOM05D007090 ORTHO05D008993 4.3e-18 96.3 294 29.3
Cpa.g.sc49.155 Carica papaya HOM05D007090 ORTHO05D008993 2.1e-17 94.0 58 67.2
ECA234G4391 Erigeron canadensis HOM05D007090 ORTHO05D008993 4.5e-15 86.3 126 43.7
SEGI_04858 Sequoiadendron giganteum HOM05D007090 ORTHO05D008993 2.5e-13 80.5 58 58.6
SMO137G0209 Selaginella moellendorffii HOM05D007090 ORTHO05D008993 4.6e-12 76.3 134 36.6
CBR_g23736 Chara braunii HOM05D007090 ORTHO05D008993 6.0e-12 75.9 70 44.3
Mapoly0035s0135 Marchantia polymorpha HOM05D007090 ORTHO05D008993 5.3e-08 62.8 126 32.5
AT4G00140 Arabidopsis thaliana HOM05D007090 ORTHO05D008993 6.9e-08 62.4 99 38.4
AUR62004167 Chenopodium quinoa HOM05D056854 ORTHO05D044030 2.0e-07 60.8 63 52.4
SMO171G0115 Selaginella moellendorffii HOM05D000227 ORTHO05D004725 6.5e-06 55.8 64 42.2


User provided reference genes

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