Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 6.0e-144 514.2 270 100.0
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 2.1e-112 409.5 274 78.1
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 1.3e-111 406.8 270 78.9
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 2.3e-111 406.0 274 77.4
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 5.1e-111 404.8 270 81.5
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 7.3e-110 401.0 279 78.5
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 9.6e-110 400.6 274 78.1
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 1.3e-109 400.2 271 77.9
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 4.0e-108 395.2 270 76.7
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 4.0e-108 395.2 270 76.3
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 5.3e-108 394.8 271 76.8
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 9.0e-108 394.0 268 76.1
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 2.0e-107 392.9 274 75.5
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 2.0e-107 392.9 270 75.9
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 2.6e-107 392.5 267 76.0
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 3.4e-107 392.1 270 75.2
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 1.7e-106 389.8 270 75.9
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 2.9e-106 389.0 270 76.3
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 8.4e-106 387.5 264 76.1
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 3.2e-105 385.6 265 74.3
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 2.1e-104 382.9 270 74.1
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 2.7e-104 382.5 270 74.8
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 4.6e-104 381.7 271 76.4
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 4.6e-104 381.7 268 75.7
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 1.3e-103 380.2 271 73.4
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 1.3e-103 380.2 273 72.9
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 3.0e-103 379.0 270 73.7
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 5.1e-103 378.3 260 75.4
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 8.7e-103 377.5 267 73.4
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 1.9e-102 376.3 267 71.5
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 5.6e-102 374.8 268 72.8
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 1.6e-101 373.2 271 72.0
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 4.8e-101 371.7 273 71.4
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 6.2e-101 371.3 272 72.4
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 8.1e-101 370.9 273 71.1
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 1.4e-100 370.2 270 70.7
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 4.0e-100 368.6 273 70.7
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 6.9e-100 367.9 272 72.4
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 1.2e-99 367.1 275 68.7
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.0e-99 366.3 286 66.1
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 2.6e-99 365.9 270 70.0
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 2.6e-99 365.9 272 72.1
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 4.5e-99 365.2 273 69.6
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 1.0e-98 364.0 273 68.9
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 1.7e-98 363.2 303 65.3
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 1.7e-98 363.2 273 70.7
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 2.2e-98 362.8 271 69.0
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 2.9e-98 362.5 266 70.3
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 2.9e-98 362.5 269 70.3
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 3.8e-98 362.1 275 69.5
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 8.4e-98 360.9 273 69.6
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 1.1e-97 360.5 271 71.2
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 1.4e-97 360.1 273 68.9
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 2.5e-97 359.4 276 67.8
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 4.2e-97 358.6 265 70.9
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 7.1e-97 357.8 276 67.4
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 9.3e-97 357.5 276 67.4
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 1.2e-96 357.1 274 70.1
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 1.3e-95 353.6 273 69.2
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.0e-95 352.4 276 66.7
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 3.9e-95 352.1 268 68.7
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 5.7e-94 348.2 272 67.6
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 2.8e-93 345.9 274 68.2
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 3.7e-93 345.5 273 68.1
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 3.7e-93 345.5 270 67.8
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.1e-92 342.4 286 64.3
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 2.0e-91 339.7 263 67.7
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 5.8e-91 338.2 270 66.7
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 5.8e-91 338.2 274 65.3
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 1.0e-90 337.4 252 72.6
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 2.2e-90 336.3 270 66.3
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 3.8e-90 335.5 269 65.8
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 5.0e-90 335.1 338 56.2
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 6.5e-90 334.7 271 65.3
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 6.5e-90 334.7 270 64.8
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 1.1e-89 334.0 268 64.9
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 2.5e-89 332.8 245 68.6
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 2.5e-89 332.8 270 64.4
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 3.2e-89 332.4 257 68.1
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 4.2e-89 332.0 243 72.0
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 7.1e-89 331.3 268 65.7
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 1.6e-88 330.1 260 66.9
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 2.3e-87 326.2 270 66.7
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 1.5e-86 323.6 268 65.7
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 1.4e-84 317.0 219 73.1
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 6.9e-84 314.7 260 63.5
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 2.7e-80 302.8 267 62.2
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 4.6e-80 302.0 268 60.8
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 2.8e-77 292.7 273 57.1
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 6.3e-77 291.6 252 62.7
TAR375G0251 Trochodendron aralioides HOM05D005802 ORTHO05D006992 2.7e-72 276.2 189 73.0
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 6.7e-71 271.6 287 54.7
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 5.7e-70 268.5 268 56.7
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 1.7e-69 266.9 272 51.8
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 7.7e-67 258.1 270 54.4
Lalb_Chr12g0208021 Lupinus albus HOM05D005802 ORTHO05D006992 1.0e-66 257.7 181 71.3
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 1.7e-66 256.9 245 60.4
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 1.3e-61 240.7 194 63.4
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 3.7e-61 239.2 246 56.9
MELO3C021033.2 Cucumis melo HOM05D005802 ORTHO05D006992 9.4e-57 224.6 198 64.1
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 1.0e-55 221.1 260 46.2
Pp3c6_12030 Physcomitrium patens HOM05D005802 ORTHO05D006992 1.6e-51 207.2 261 44.8
Oeu051926.1 Olea europaea HOM05D005802 ORTHO05D006992 7.7e-51 204.9 140 71.4
AagrBONN_evm.TU.Sc2ySwM_368.1567 Anthoceros agrestis HOM05D005802 ORTHO05D006992 2.9e-50 203.0 258 43.0
SMO347G0664 Selaginella moellendorffii HOM05D005802 ORTHO05D006992 3.6e-48 196.1 231 47.6
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 8.8e-47 191.4 343 40.5
FAN03G0348 Fragaria x ananassa HOM05D005802 ORTHO05D006992 8.3e-37 158.3 115 73.0
FAN03G0906 Fragaria x ananassa HOM05D005802 ORTHO05D006992 8.3e-37 158.3 115 73.0
Actinidia33479 Actinidia chinensis HOM05D005802 ORTHO05D006992 4.1e-36 156.0 131 59.5
Ah.05g173870 Amaranthus hybridus HOM05D005802 ORTHO05D006992 5.4e-36 155.6 140 59.3
Ah.05g173880 Amaranthus hybridus HOM05D005802 ORTHO05D006992 9.2e-36 154.8 108 74.1
RcHm_v2.0_Chr1g0349241 Rosa chinensis HOM05D005802 ORTHO05D006992 2.8e-32 143.3 112 67.0
Oeu055514.1 Olea europaea HOM05D005802 ORTHO05D006992 6.2e-32 142.1 154 56.5
SHI22577 Sapria himalayana HOM05D005802 ORTHO05D006992 5.2e-31 139.0 160 52.5
RcHm_v2.0_Chr1g0349251 Rosa chinensis HOM05D005802 ORTHO05D006992 5.8e-30 135.6 84 78.6
RcHm_v2.0_Chr1g0349161 Rosa chinensis HOM05D005802 ORTHO05D006992 1.3e-29 134.4 152 50.7
Hma1.2p1_0072F.1_g038280 Hydrangea macrophylla HOM05D005802 ORTHO05D006992 1.7e-29 134.0 112 68.8
Glyma.03G031466 Glycine max HOM05D005802 ORTHO05D006992 3.7e-29 132.9 94 71.3
CBR_g48776 Chara braunii HOM05D005802 ORTHO05D006992 1.4e-28 131.0 238 34.5
SHI22578 Sapria himalayana HOM05D005802 ORTHO05D006992 1.2e-27 127.9 104 67.3
Cc00_g05160 Coffea canephora HOM05D005802 ORTHO05D006992 5.0e-26 122.5 109 63.3
Cc00_g05150 Coffea canephora HOM05D005802 ORTHO05D006992 7.3e-25 118.6 111 60.4
Cre16.g672500 Chlamydomonas reinhardtii HOM05D005802 ORTHO05D006992 9.5e-25 118.2 263 32.3
Oeu045806.1 Olea europaea HOM05D005802 ORTHO05D006992 1.2e-22 111.3 74 77.0
Lalb_Chr12g0208011 Lupinus albus HOM05D005802 ORTHO05D006992 2.6e-22 110.2 74 81.1
FAN10G4230 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.4e-20 104.4 56 82.1
ECA240G2706 Erigeron canadensis HOM05D001255 ORTHO05D001246 7.1e-20 102.1 66 74.2
CARHR170760 Cardamine hirsuta HOM05D005802 ORTHO05D006992 7.8e-19 98.6 74 71.6
RcHm_v2.0_Chr1g0349171 Rosa chinensis HOM05D005802 ORTHO05D006992 3.9e-18 96.3 58 82.8
C04p32020 Brassica napus HOM05D010895 ORTHO05D012939 1.5e-17 94.4 117 49.6
Dinv44127 Davidia involucrata HOM05D005802 ORTHO05D006992 9.5e-17 91.7 69 60.9
BolC4t24754H Brassica oleracea HOM05D005802 ORTHO05D006992 1.1e-15 88.2 104 52.9
Glyma.03G031532 Glycine max HOM05D005802 ORTHO05D006992 4.6e-11 72.8 82 52.4
SGA_v2.0_scaffold123G33454 Striga asiatica HOM05D000451 ORTHO05D000351 2.5e-09 67.0 115 39.1
arahy.Tifrunner.gnm1.ann1.QJV3PU Arachis hypogaea HOM05D003356 ORTHO05D086117 3.1e-07 60.1 70 52.9
Aa31sc27G90 Aethionema arabicum HOM05D005802 ORTHO05D006992 1.5e-06 57.8 60 53.3


User provided reference genes

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