Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G046700 Manihot esculenta HOM05D005612 ORTHO05D007014 3.6e-222 774.6 394 100.0
Manes.01G266600 Manihot esculenta HOM05D005612 ORTHO05D007014 1.4e-178 629.8 389 83.0
Atru.chr2.2479 Acer truncatum HOM05D005612 ORTHO05D007014 2.8e-158 562.4 390 72.8
GSVIVG01027677001 Vitis vinifera HOM05D005612 ORTHO05D007014 6.2e-158 561.2 389 73.5
Potri.014G068500 Populus trichocarpa HOM05D005612 ORTHO05D007014 2.0e-156 556.2 400 71.8
QL08p052678 Quercus lobata HOM05D005612 ORTHO05D007014 2.6e-156 555.8 390 72.8
Ciclev10010228m.g Citrus clementina HOM05D005612 ORTHO05D007014 8.4e-155 550.8 389 73.3
Prupe.6G155400 Prunus persica HOM05D005612 ORTHO05D007014 3.3e-151 538.9 390 71.0
Gorai.004G162600 Gossypium raimondii HOM05D005612 ORTHO05D007014 8.1e-150 534.3 407 67.6
Gohir.A08G135500 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.4e-149 533.5 407 67.8
Duzib138G1608 Durio zibethinus HOM05D005612 ORTHO05D007014 2.4e-149 532.7 407 68.6
TAR375G1134 Trochodendron aralioides HOM05D005612 ORTHO05D007014 3.1e-149 532.3 391 70.1
Cpa.g.sc18.108 Carica papaya HOM05D005612 ORTHO05D007014 4.0e-149 531.9 378 71.4
CSS0047351 Camellia sinensis var. sinensis HOM05D005612 ORTHO05D007014 5.3e-149 531.6 390 69.7
Nn4g26368 Nelumbo nucifera HOM05D005612 ORTHO05D007014 9.0e-149 530.8 391 69.8
Thecc.01G378200 Theobroma cacao HOM05D005612 ORTHO05D007014 1.5e-148 530.0 407 68.1
Hma1.2p1_2025F.1_g311480 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 2.6e-148 529.3 390 69.5
TWI14G1300 Tripterygium wilfordii HOM05D005612 ORTHO05D007014 2.6e-148 529.3 389 68.9
CANSAT01G1400 Cannabis sativa HOM05D005612 ORTHO05D007014 3.4e-148 528.9 391 71.6
Dinv43696 Davidia involucrata HOM05D005612 ORTHO05D007014 7.6e-148 527.7 390 70.0
vmacro13411 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 3.8e-147 525.4 390 69.5
CiPaw.01G263000 Carya illinoinensis HOM05D005612 ORTHO05D007014 4.9e-147 525.0 389 69.9
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 8.4e-147 524.2 364 72.5
Cfa015219 Carpinus fangiana HOM05D005612 ORTHO05D007014 1.1e-146 523.9 378 70.4
Migut.B01623 Erythranthe guttata HOM05D005612 ORTHO05D007014 1.4e-146 523.5 390 67.9
Lj3g0004128 Lotus japonicus HOM05D005612 ORTHO05D007014 3.2e-146 522.3 389 69.9
DCAR_008555 Daucus carota HOM05D005612 ORTHO05D007014 9.3e-146 520.8 391 68.8
Haze_16797 Corylus avellana HOM05D005612 ORTHO05D007014 1.2e-145 520.4 363 71.9
Lalb_Chr01g0021461 Lupinus albus HOM05D005612 ORTHO05D007014 1.6e-145 520.0 374 71.7
Lalb_Chr03g0039601 Lupinus albus HOM05D005612 ORTHO05D007014 1.6e-145 520.0 389 69.2
Sed0014004 Sechium edule HOM05D005612 ORTHO05D007014 1.6e-145 520.0 380 69.2
Eucgr.E01443 Eucalyptus grandis HOM05D005612 ORTHO05D007014 2.7e-145 519.2 389 69.2
Hma1.2p1_0511F.1_g169190 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 2.7e-145 519.2 390 68.5
RcHm_v2.0_Chr3g0497141 Rosa chinensis HOM05D005612 ORTHO05D007014 1.0e-144 517.3 393 69.2
Actinidia12252 Actinidia chinensis HOM05D005612 ORTHO05D007014 1.3e-144 516.9 387 68.2
Aqoxy3G02061 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 2.3e-144 516.2 391 67.0
Phvul.011G138100 Phaseolus vulgaris HOM05D005612 ORTHO05D007014 2.3e-144 516.2 389 69.4
Gohir.D08G156300 Gossypium hirsutum HOM05D005612 ORTHO05D007014 5.1e-144 515.0 398 67.3
Psat0s2995g0040 Pisum sativum HOM05D005612 ORTHO05D007014 5.1e-144 515.0 390 70.3
Aqoxy1G04104 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 1.1e-143 513.8 391 66.5
Glyma.12G134000 Glycine max HOM05D005612 ORTHO05D007014 1.9e-143 513.1 389 69.2
FAN28G0581 Fragaria x ananassa HOM05D005612 ORTHO05D007014 2.5e-143 512.7 391 68.5
MD00G1094900 Malus domestica HOM05D005612 ORTHO05D007014 2.5e-143 512.7 403 67.2
TPR.G17234 Trifolium pratense HOM05D005612 ORTHO05D007014 3.3e-143 512.3 393 69.5
arahy.Tifrunner.gnm1.ann1.39QM8U Arachis hypogaea HOM05D005612 ORTHO05D007014 1.3e-142 510.4 386 69.4
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 2.8e-142 509.2 395 66.1
THA.LOC104827614 Tarenaya hassleriana HOM05D005612 ORTHO05D007014 2.8e-142 509.2 398 65.1
arahy.Tifrunner.gnm1.ann1.Q1YE57 Arachis hypogaea HOM05D005612 ORTHO05D007014 4.8e-142 508.4 386 69.2
MSTRG.17178 Avicennia marina HOM05D005612 ORTHO05D007014 6.2e-142 508.1 390 66.7
Nitab4.5_0000264g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 8.1e-142 507.7 392 66.3
FAN28G2973 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.4e-141 506.9 391 67.5
CsaV3_3G009760 Cucumis sativus L. HOM05D005612 ORTHO05D007014 4.0e-141 505.4 380 67.1
FvH4_1g28100 Fragaria vesca HOM05D005612 ORTHO05D007014 4.0e-141 505.4 391 67.5
Glyma.06G270700 Glycine max HOM05D005612 ORTHO05D007014 5.3e-141 505.0 391 68.8
Peaxi162Scf00045g01936 Petunia axillaris HOM05D005612 ORTHO05D007014 6.9e-141 504.6 387 68.5
Carub.0004s2795 Capsella rubella HOM05D005612 ORTHO05D007014 2.6e-140 502.7 390 66.4
FAN23G2738 Fragaria x ananassa HOM05D005612 ORTHO05D007014 4.5e-140 501.9 391 67.0
Medtr4g053430 Medicago truncatula HOM05D005612 ORTHO05D007014 9.9e-140 500.7 353 74.2
CAN.G530.1 Capsicum annuum HOM05D005612 ORTHO05D007014 2.2e-139 499.6 388 65.2
FAN26G0204 Fragaria x ananassa HOM05D005612 ORTHO05D007014 8.4e-139 497.7 413 63.7
Solyc08g006610.3 Solanum lycopersicum HOM05D005612 ORTHO05D007014 8.4e-139 497.7 392 65.3
Sabra14G0048200 Salix brachista HOM05D005612 ORTHO05D007014 2.7e-137 492.7 379 69.1
Sopen08g002560 Solanum pennellii HOM05D005612 ORTHO05D007014 3.5e-137 492.3 392 65.1
AUR62000130 Chenopodium quinoa HOM05D005612 ORTHO05D007014 1.8e-136 490.0 401 64.8
PSO339G2081 Papaver somniferum HOM05D005612 ORTHO05D007014 3.0e-136 489.2 391 65.2
PSO384G4101 Papaver somniferum HOM05D005612 ORTHO05D007014 1.9e-135 486.5 386 65.5
ECA236G2759 Erigeron canadensis HOM05D005612 ORTHO05D007014 2.5e-135 486.1 397 64.2
PGR042G0232 Punica granatum HOM05D005612 ORTHO05D007014 2.5e-135 486.1 382 65.4
Cc02_g24020 Coffea canephora HOM05D005612 ORTHO05D007014 3.3e-135 485.7 390 65.1
Hund07502 Selenicereus undatus HOM05D005612 ORTHO05D007014 3.3e-135 485.7 415 61.4
Lsat_1_v5_gn_7_9741 Lactuca sativa HOM05D005612 ORTHO05D007014 5.6e-135 485.0 380 65.8
Thhalv10001485m.g Eutrema salsugineum HOM05D005612 ORTHO05D007014 2.8e-134 482.6 392 65.1
AL4G44420 Arabidopsis lyrata HOM05D005612 ORTHO05D007014 4.8e-134 481.9 391 64.5
EL10Ac4g10240 Beta vulgaris HOM05D005612 ORTHO05D007014 6.2e-134 481.5 391 64.5
A03p25180 Brassica napus HOM05D005612 ORTHO05D007014 2.4e-133 479.6 391 63.7
Sp4g27340 Schrenkiella parvula HOM05D005612 ORTHO05D007014 3.1e-133 479.2 391 64.5
vmacro21020 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 3.1e-133 479.2 368 67.1
Oeu055499.1 Olea europaea HOM05D005612 ORTHO05D007014 9.0e-133 477.6 376 64.9
SalBow5G3218 Salvia bowleyana HOM05D005612 ORTHO05D007014 9.0e-133 477.6 367 66.5
AT2G45320 Arabidopsis thaliana HOM05D005612 ORTHO05D007014 1.5e-132 476.9 390 64.4
BraA03t11718Z Brassica rapa HOM05D005612 ORTHO05D007014 5.8e-132 474.9 391 63.4
Ca_19396_v3 Cicer arietinum L. HOM05D005612 ORTHO05D007014 6.5e-131 471.5 376 66.0
BcaB01g03271 Brassica carinata HOM05D005612 ORTHO05D007014 1.1e-130 470.7 390 62.1
Lsat_1_v5_gn_8_86120 Lactuca sativa HOM05D005612 ORTHO05D007014 1.1e-130 470.7 370 65.9
C03p30020 Brassica napus HOM05D005612 ORTHO05D007014 2.1e-129 466.5 391 61.9
BcaC01g05140 Brassica carinata HOM05D005612 ORTHO05D007014 1.3e-128 463.8 391 62.9
BolC3t15349H Brassica oleracea HOM05D005612 ORTHO05D007014 1.3e-128 463.8 391 62.9
HanXRQChr04g0122751 Helianthus annuus HOM05D005612 ORTHO05D007014 3.0e-128 462.6 399 62.4
unitig_749.g14376 Utricularia gibba HOM05D005612 ORTHO05D007014 1.1e-127 460.7 390 60.8
Lj7C530T5 Lonicera japonica HOM05D005612 ORTHO05D007014 1.3e-120 437.2 424 57.5
Nitab4.5_0005450g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 3.9e-120 435.6 325 68.9
Ah.04g161950 Amaranthus hybridus HOM05D004275 ORTHO05D005720 5.7e-119 431.8 387 59.9
Sc16g0011470 Simmondsia chinensis HOM05D005612 ORTHO05D007014 1.1e-117 427.6 348 64.4
MELO3C006197.2 Cucumis melo HOM05D005612 ORTHO05D007014 1.2e-113 414.1 296 69.9
PGSC0003DMG400026305 Solanum tuberosum HOM05D005612 ORTHO05D007014 1.8e-112 410.2 323 64.7
VMungo1127G0102 Vigna mungo HOM05D005612 ORTHO05D007014 4.8e-110 402.1 251 77.7
Zm00001eb195050 Zea mays HOM05D005612 ORTHO05D007014 6.3e-110 401.7 381 57.2
AUR62019310 Chenopodium quinoa HOM05D005612 ORTHO05D007014 1.3e-107 394.0 263 74.9
CDE07G1659 Ceratophyllum demersum HOM05D005612 ORTHO05D007014 3.3e-103 379.4 331 58.0
ATR1100G025 Amborella trichopoda HOM05D005612 ORTHO05D007014 2.9e-99 366.3 305 62.0
unitig_76.g29085 Utricularia gibba HOM05D005612 ORTHO05D007014 1.6e-92 344.0 390 49.2
MBI14_g08144_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 4.0e-88 329.3 265 64.5
CiPaw.09G176500 Carya illinoinensis HOM05D005612 ORTHO05D007014 3.4e-87 326.2 323 54.8
ATR0686G054 Amborella trichopoda HOM05D005612 ORTHO05D007014 1.1e-85 321.2 262 62.2
CARHR140520 Cardamine hirsuta HOM05D005612 ORTHO05D007014 2.0e-79 300.4 184 77.7
Aa31LG1G26830 Aethionema arabicum HOM05D005612 ORTHO05D007014 4.1e-77 292.7 184 75.0
Duzib138G0844 Durio zibethinus HOM05D005612 ORTHO05D007014 1.6e-76 290.8 160 88.1
SGA_v2.0_scaffold153G37000 Striga asiatica HOM05D005612 ORTHO05D007014 4.7e-73 279.3 226 66.8
SMO119G0175 Selaginella moellendorffii HOM05D005612 ORTHO05D007014 9.2e-69 265.0 272 48.5
Dinv32369 Davidia involucrata HOM05D005612 ORTHO05D007014 1.4e-64 251.1 194 68.6
Zm00001eb012290 Zea mays HOM05D005612 ORTHO05D007014 2.3e-59 233.8 188 61.7
Zm00001eb249030 Zea mays HOM05D005612 ORTHO05D007014 6.6e-59 232.3 178 65.7
FAN19G0199 Fragaria x ananassa HOM05D005612 ORTHO05D007014 3.3e-58 229.9 130 82.3
AagrBONN_evm.TU.Sc2ySwM_117.669 Anthoceros agrestis HOM05D005612 ORTHO05D007014 8.3e-54 215.3 217 49.3
MSTRG.28297 Avicennia marina HOM05D005612 ORTHO05D007014 1.4e-48 198.0 113 79.6
Pp3c17_6010 Physcomitrium patens HOM05D005612 ORTHO05D007014 2.4e-48 197.2 212 47.2
CARHR140530 Cardamine hirsuta HOM05D005612 ORTHO05D007014 4.4e-47 193.0 188 57.4
Medtr8g102045 Medicago truncatula HOM05D005612 ORTHO05D007014 1.4e-40 171.4 124 70.2
Medtr8g102040 Medicago truncatula HOM05D005612 ORTHO05D007014 1.4e-37 161.4 131 61.1
Zm00001eb385140 Zea mays HOM05D005612 ORTHO05D007014 1.9e-37 161.0 133 61.7
Zm00001eb084960 Zea mays HOM05D005612 ORTHO05D007014 9.3e-37 158.7 133 61.7
Oeu011925.1 Olea europaea HOM05D005612 ORTHO05D007014 5.1e-35 152.9 200 44.5
Gohir.A08G135200 Gossypium hirsutum HOM05D005612 ORTHO05D007014 2.4e-32 144.1 160 51.9
Rhsim01G0149000 Rhododendron simsii HOM05D005612 ORTHO05D007014 2.0e-31 141.0 243 37.9
SEGI_33395 Sequoiadendron giganteum HOM05D005612 ORTHO05D007014 1.2e-28 131.7 177 46.9
Zm00001eb270960 Zea mays HOM05D005612 ORTHO05D002685 6.0e-28 129.4 84 75.0
Gohir.A08G135550 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.3e-27 128.3 135 54.1
MBI14_g08143_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 1.2e-23 115.2 101 60.4
Glyma.20G076400 Glycine max HOM05D005612 ORTHO05D007014 2.6e-23 114.0 75 69.3
Zm00001eb321930 Zea mays HOM05D005612 ORTHO05D007014 1.7e-22 111.3 114 54.4
TAR626G0370 Trochodendron aralioides HOM05D005612 ORTHO05D007014 2.2e-22 110.9 63 82.5
Haze_18350 Corylus avellana HOM05D005612 ORTHO05D007014 3.7e-17 93.6 73 63.0
Os06g0571300 Oryza sativa ssp. japonica HOM05D005612 ORTHO05D007014 1.0e-14 85.5 96 56.2
Medtr8g102042 Medicago truncatula HOM05D005612 ORTHO05D007014 1.9e-13 81.3 68 67.6
MD15G1255900 Malus domestica HOM05D001392 ORTHO05D036605 2.1e-12 77.8 45 80.0
Lalb_Chr08g0243441 Lupinus albus HOM05D005612 ORTHO05D007014 8.7e-11 72.4 45 75.6
Dinv39084 Davidia involucrata HOM05D005612 ORTHO05D007014 9.0e-08 62.4 105 36.2
Lalb_Chr16g0388221 Lupinus albus HOM05D005612 ORTHO05D007014 5.0e-06 56.6 34 73.5


User provided reference genes

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