Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G045200 Manihot esculenta HOM05D006036 ORTHO05D007736 1.4e-127 459.5 224 100.0
Sabra02G0117300 Salix brachista HOM05D006036 ORTHO05D007736 5.2e-93 344.7 221 77.8
Sabra02G0115600 Salix brachista HOM05D006036 ORTHO05D007736 2.6e-92 342.4 223 76.2
Potri.002G148400 Populus trichocarpa HOM05D006036 ORTHO05D007736 3.7e-91 338.6 220 74.1
Prupe.2G145700 Prunus persica HOM05D006036 ORTHO05D007736 3.1e-90 335.5 224 75.0
MD02G1204100 Malus domestica HOM05D006036 ORTHO05D007736 5.0e-88 328.2 225 73.8
TWI14G1308 Tripterygium wilfordii HOM05D006036 ORTHO05D007736 1.5e-87 326.6 226 71.7
RcHm_v2.0_Chr1g0350591 Rosa chinensis HOM05D006036 ORTHO05D007736 2.1e-86 322.8 227 71.8
FAN03G0372 Fragaria x ananassa HOM05D006036 ORTHO05D007736 4.7e-86 321.6 227 73.6
CiPaw.01G261900 Carya illinoinensis HOM05D006036 ORTHO05D007736 1.0e-85 320.5 224 70.5
Duzib133G1287 Durio zibethinus HOM05D006036 ORTHO05D007736 1.8e-85 319.7 227 71.8
Gohir.A08G134500 Gossypium hirsutum HOM05D006036 ORTHO05D007736 1.8e-85 319.7 226 71.7
FAN10G3538 Fragaria x ananassa HOM05D006036 ORTHO05D007736 4.0e-85 318.5 226 71.7
QL08p052466 Quercus lobata HOM05D006036 ORTHO05D007736 6.8e-85 317.8 224 71.9
FAN01G0425 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.2e-84 317.0 226 71.2
Cpa.g.sc349.4 Carica papaya HOM05D006036 ORTHO05D007736 7.5e-84 314.3 226 70.8
FvH4_7g11910 Fragaria vesca HOM05D006036 ORTHO05D007736 1.3e-83 313.5 226 71.7
Cfa001720 Carpinus fangiana HOM05D006036 ORTHO05D007736 2.2e-83 312.8 224 69.2
Haze_16816 Corylus avellana HOM05D006036 ORTHO05D007736 2.2e-83 312.8 224 70.1
CANSAT56G2189 Cannabis sativa HOM05D006036 ORTHO05D007736 1.1e-82 310.5 185 78.9
CsaV3_6G006160 Cucumis sativus L. HOM05D006036 ORTHO05D007736 1.6e-81 306.6 217 69.1
Thecc.01G376100 Theobroma cacao HOM05D006036 ORTHO05D007736 2.0e-81 306.2 228 68.9
Sed0014119 Sechium edule HOM05D006036 ORTHO05D007736 1.1e-79 300.4 231 66.2
Nn1g01232 Nelumbo nucifera HOM05D006036 ORTHO05D007736 1.5e-79 300.1 225 66.7
GSVIVG01027612001 Vitis vinifera HOM05D006036 ORTHO05D007736 1.9e-79 299.7 225 66.7
PGR042G0035 Punica granatum HOM05D006036 ORTHO05D007736 3.3e-79 298.9 232 68.1
Actinidia12688 Actinidia chinensis HOM05D006036 ORTHO05D007736 3.6e-78 295.4 225 67.1
Medtr4g023550 Medicago truncatula HOM05D006036 ORTHO05D007736 3.6e-78 295.4 223 65.9
Glyma.01G142900 Glycine max HOM05D006036 ORTHO05D007736 4.7e-78 295.0 228 65.8
AL5G43130 Arabidopsis lyrata HOM05D006036 ORTHO05D007736 6.2e-78 294.7 224 67.4
Rhsim01G0147400 Rhododendron simsii HOM05D006036 ORTHO05D007736 6.2e-78 294.7 231 66.7
Psat7g231640 Pisum sativum HOM05D006036 ORTHO05D007736 1.8e-77 293.1 212 68.4
Carub.0005s2756 Capsella rubella HOM05D006036 ORTHO05D007736 5.2e-77 291.6 224 67.9
Eucgr.E01417 Eucalyptus grandis HOM05D006036 ORTHO05D007736 5.2e-77 291.6 201 74.1
Glyma.03G023900 Glycine max HOM05D006036 ORTHO05D007736 8.9e-77 290.8 225 64.9
Sed0006891 Sechium edule HOM05D006036 ORTHO05D007736 8.9e-77 290.8 183 76.5
BcaC07g40602 Brassica carinata HOM05D006036 ORTHO05D007736 1.2e-76 290.4 224 67.9
Lj3g0008791 Lotus japonicus HOM05D006036 ORTHO05D007736 1.2e-76 290.4 196 73.0
Oeu037915.1 Olea europaea HOM05D006036 ORTHO05D007736 1.2e-76 290.4 229 64.6
BolC8t51167H Brassica oleracea HOM05D006036 ORTHO05D007736 1.5e-76 290.0 224 67.9
Ca_03013_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 2.0e-76 289.7 213 68.5
Glyma.14G070200 Glycine max HOM05D006036 ORTHO05D007736 2.0e-76 289.7 225 64.9
Sp5g02440 Schrenkiella parvula HOM05D006036 ORTHO05D007736 2.0e-76 289.7 224 67.0
C08p35770 Brassica napus HOM05D006036 ORTHO05D007736 2.6e-76 289.3 224 67.9
THA.LOC104802443 Tarenaya hassleriana HOM05D006036 ORTHO05D007736 2.6e-76 289.3 231 65.8
A09p53070 Brassica napus HOM05D006036 ORTHO05D007736 4.4e-76 288.5 224 67.4
Ciclev10022362m.g Citrus clementina HOM05D006036 ORTHO05D007736 7.5e-76 287.7 223 66.4
Aa31LG10G15050 Aethionema arabicum HOM05D006036 ORTHO05D007736 1.3e-75 287.0 224 67.0
Sc02g0002580 Simmondsia chinensis HOM05D006036 ORTHO05D007736 1.3e-75 287.0 229 65.1
Atru.chr5.310 Acer truncatum HOM05D006036 ORTHO05D007736 2.9e-75 285.8 207 69.6
Sopen01g037100 Solanum pennellii HOM05D006036 ORTHO05D007736 3.7e-75 285.4 218 64.7
AT3G60810 Arabidopsis thaliana HOM05D006036 ORTHO05D007736 6.4e-75 284.6 226 66.4
TPR.G9852 Trifolium pratense HOM05D006036 ORTHO05D007736 6.4e-75 284.6 174 78.2
Lalb_Chr07g0189801 Lupinus albus HOM05D006036 ORTHO05D007736 1.4e-74 283.5 197 70.1
Solyc01g091360.4 Solanum lycopersicum HOM05D006036 ORTHO05D007736 1.9e-74 283.1 221 63.8
Aqoxy7G00627 Aquilegia oxysepala HOM05D006036 ORTHO05D007736 4.1e-74 282.0 183 74.3
BcaC07g42642 Brassica carinata HOM05D006036 ORTHO05D007736 5.4e-74 281.6 224 67.4
Phvul.010G084400 Phaseolus vulgaris HOM05D006036 ORTHO05D007736 7.0e-74 281.2 200 69.5
Glyma.08G286100 Glycine max HOM05D006036 ORTHO05D007736 2.0e-73 279.6 209 67.0
Dinv32378 Davidia involucrata HOM05D006036 ORTHO05D007736 3.5e-73 278.9 208 67.8
Hund17020 Selenicereus undatus HOM05D006036 ORTHO05D007736 3.5e-73 278.9 212 65.1
CARHR171200 Cardamine hirsuta HOM05D006036 ORTHO05D007736 4.6e-73 278.5 210 68.1
Thhalv10006234m.g Eutrema salsugineum HOM05D006036 ORTHO05D007736 4.6e-73 278.5 224 65.6
PGSC0003DMG400012774 Solanum tuberosum HOM05D006036 ORTHO05D007736 1.0e-72 277.3 218 63.8
Lj9A569G50 Lonicera japonica HOM05D006036 ORTHO05D007736 1.3e-72 276.9 211 65.4
BraA09t40733Z Brassica rapa HOM05D006036 ORTHO05D007736 2.3e-72 276.2 177 76.8
unitig_8.g4983 Utricularia gibba HOM05D006036 ORTHO05D007736 2.3e-72 276.2 176 74.4
CDE02G2016 Ceratophyllum demersum HOM05D006036 ORTHO05D007736 3.9e-72 275.4 177 74.6
Cc02_g36690 Coffea canephora HOM05D006036 ORTHO05D007736 3.9e-72 275.4 222 63.1
MBI04_g35276_MAGBIO Magnolia biondii HOM05D006036 ORTHO05D007736 5.0e-72 275.0 188 70.2
AUR62013628 Chenopodium quinoa HOM05D006036 ORTHO05D007736 8.6e-72 274.2 230 60.0
EL10Ac1g00899 Beta vulgaris HOM05D006036 ORTHO05D007736 1.5e-71 273.5 231 62.8
Ah.16g109830 Amaranthus hybridus HOM05D006036 ORTHO05D007736 1.9e-71 273.1 185 71.4
HanXRQChr16g0520241 Helianthus annuus HOM05D006036 ORTHO05D007736 1.9e-71 273.1 179 72.6
SalBow5G0783 Salvia bowleyana HOM05D006036 ORTHO05D007736 4.3e-71 271.9 229 60.3
SalBow5G3583 Salvia bowleyana HOM05D006036 ORTHO05D007736 4.3e-71 271.9 229 60.3
DCAR_031531 Daucus carota HOM05D006036 ORTHO05D007736 1.2e-70 270.4 208 67.3
ECA234G4399 Erigeron canadensis HOM05D006036 ORTHO05D007736 2.8e-70 269.2 214 62.1
MSTRG.4890 Avicennia marina HOM05D006036 ORTHO05D007736 3.6e-70 268.9 225 60.0
CSS0022013 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 6.2e-70 268.1 227 63.0
CSS0011162 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 8.1e-70 267.7 226 63.3
FAN10G0738 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.1e-69 267.3 151 84.1
Lsat_1_v5_gn_4_40940 Lactuca sativa HOM05D006036 ORTHO05D007736 1.8e-69 266.5 176 72.2
arahy.Tifrunner.gnm1.ann1.B3VI1A Arachis hypogaea HOM05D006036 ORTHO05D007736 1.2e-68 263.8 209 64.1
Medtr7g074920 Medicago truncatula HOM05D006036 ORTHO05D007736 4.4e-68 261.9 208 63.5
SEGI_01363 Sequoiadendron giganteum HOM05D006036 ORTHO05D007736 6.4e-67 258.1 186 65.1
vmacro21009 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 5.4e-66 255.0 160 76.9
Zm00001eb210410 Zea mays HOM05D006036 ORTHO05D007736 7.8e-65 251.1 178 63.5
Os03g0858700 Oryza sativa ssp. japonica HOM05D006036 ORTHO05D007736 8.6e-64 247.7 173 65.3
ATR0810G113 Amborella trichopoda HOM05D006036 ORTHO05D007736 1.1e-63 247.3 176 69.9
Nitab4.5_0005372g0020 Nicotiana tabacum HOM05D006036 ORTHO05D007736 5.6e-63 245.0 151 75.5
AUR62004220 Chenopodium quinoa HOM05D006036 ORTHO05D007736 1.1e-61 240.7 155 73.5
vmacro21008 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 1.1e-61 240.7 152 77.0
Gohir.D08G155400 Gossypium hirsutum HOM05D006036 ORTHO05D007736 2.3e-61 239.6 182 68.7
arahy.Tifrunner.gnm1.ann1.Y8TVDJ Arachis hypogaea HOM05D006036 ORTHO05D007736 7.6e-60 234.6 155 72.3
Pp3c23_9860 Physcomitrium patens HOM05D006036 ORTHO05D007736 3.2e-58 229.2 205 55.1
VMungo0251G0926 Vigna mungo HOM05D006036 ORTHO05D007736 9.2e-58 227.6 216 56.9
AagrBONN_evm.TU.Sc2ySwM_117.1558 Anthoceros agrestis HOM05D006036 ORTHO05D007736 1.0e-56 224.2 170 62.9
Mapoly0007s0216 Marchantia polymorpha HOM05D006036 ORTHO05D007736 1.0e-56 224.2 191 55.5
PSO782G0421 Papaver somniferum HOM05D006036 ORTHO05D007736 1.3e-56 223.8 228 53.1
VMungo0331G0186 Vigna mungo HOM05D006036 ORTHO05D007736 4.3e-55 218.8 253 50.6
PSO478G2400 Papaver somniferum HOM05D006036 ORTHO05D007736 7.3e-55 218.0 215 54.4
Hma1.2p1_1122F.1_g259290 Hydrangea macrophylla HOM05D006036 ORTHO05D007736 1.6e-54 216.9 174 65.5
SMO143G0045 Selaginella moellendorffii HOM05D006036 ORTHO05D007736 1.4e-53 213.8 152 64.5
COL.COLO4_12549 Corchorus olitorius HOM05D006036 ORTHO05D007736 4.0e-53 212.2 171 64.9
ClCG06G000370 Citrullus lanatus HOM05D006036 ORTHO05D007736 3.4e-52 209.1 214 53.7
SGA_v2.0_scaffold153G37014 Striga asiatica HOM05D006036 ORTHO05D001464 9.0e-45 184.5 187 51.9
Nitab4.5_0000457g0290 Nicotiana tabacum HOM05D006036 ORTHO05D007736 2.6e-44 183.0 211 50.7
Cre11.g468750 Chlamydomonas reinhardtii HOM05D006036 ORTHO05D007736 7.6e-44 181.4 201 47.3
MELO3C035247.2 Cucumis melo HOM05D006036 ORTHO05D007736 2.9e-43 179.5 104 79.8
Peaxi162Scf00021g01720 Petunia axillaris HOM05D006036 ORTHO05D007736 4.6e-41 172.2 110 75.5
Glyma.09G269100 Glycine max HOM05D006036 ORTHO05D007736 4.3e-39 165.6 137 65.0
FAN06G1700 Fragaria x ananassa HOM05D006036 ORTHO05D007736 3.6e-38 162.5 95 83.2
CAN.G388.12 Capsicum annuum HOM05D006036 ORTHO05D007736 1.8e-37 160.2 108 69.4
Lalb_Chr03g0039561 Lupinus albus HOM05D006036 ORTHO05D007736 5.3e-37 158.7 130 60.8
Ca_07819_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 5.5e-34 148.7 95 74.7
FAN06G2896 Fragaria x ananassa HOM05D006036 ORTHO05D007736 6.7e-32 141.7 77 85.7
Migut.N01635 Erythranthe guttata HOM05D006036 ORTHO05D007736 3.3e-31 139.4 120 60.0
Ciclev10033315m.g Citrus clementina HOM05D006036 ORTHO05D007736 7.4e-31 138.3 142 55.6
Ca_19909_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 1.6e-30 137.1 91 70.3
MELO3C034959.2 Cucumis melo HOM05D006036 ORTHO05D007736 2.4e-29 133.3 87 74.7
MCO13G087 Micromonas commoda HOM05D006036 ORTHO05D007736 4.0e-29 132.5 160 45.0
CBR_g54966 Chara braunii HOM05D006036 ORTHO05D007736 1.2e-28 131.0 84 69.0
Gorai.007G091200 Gossypium raimondii HOM05D001611 ORTHO05D001464 1.3e-24 117.5 68 76.5
Gohir.D11G085366 Gossypium hirsutum HOM05D001611 ORTHO05D001464 1.9e-23 113.6 68 73.5
Lalb_Chr03g0039551 Lupinus albus HOM05D006036 ORTHO05D007736 2.4e-21 106.7 80 65.0
Psat3g116040 Pisum sativum HOM05D006036 ORTHO05D007736 1.3e-19 100.9 65 72.3
Lj1g0011795 Lotus japonicus HOM05D006036 ORTHO05D007736 7.2e-18 95.1 53 83.0
Gorai.004G161600 Gossypium raimondii HOM05D006036 ORTHO05D007736 4.6e-17 92.4 92 55.4
arahy.Tifrunner.gnm1.ann1.WD24C8 Arachis hypogaea HOM05D006036 ORTHO05D007736 1.9e-15 87.0 78 57.7
arahy.Tifrunner.gnm1.ann1.BW32E7 Arachis hypogaea HOM05D006036 ORTHO05D000587 7.7e-12 75.1 71 53.5


User provided reference genes

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