Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 0.0e+00 1306.2 631 100.0
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 0.0e+00 1095.1 635 85.2
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 3.9e-311 1070.8 639 84.4
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 4.9e-306 1053.9 649 80.6
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 2.7e-296 1021.5 650 78.6
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 6.0e-296 1020.4 650 78.0
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 7.8e-296 1020.0 645 79.1
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 3.0e-295 1018.1 645 79.2
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 6.6e-295 1016.9 651 77.6
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 6.6e-295 1016.9 645 79.1
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 8.6e-295 1016.5 649 78.3
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 1.8e-292 1008.8 655 77.1
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 7.6e-291 1003.4 636 78.3
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 7.6e-291 1003.4 639 78.1
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 1.3e-290 1002.7 654 75.8
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 1.9e-289 998.8 648 76.7
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 2.7e-288 995.0 635 78.0
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 4.6e-288 994.2 645 76.6
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 3.0e-287 991.5 646 76.6
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 2.8e-285 984.9 650 76.3
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 4.0e-284 981.1 652 74.7
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.2e-280 969.5 649 75.2
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 1.3e-279 966.1 649 75.0
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.3e-279 965.3 648 74.5
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 3.9e-279 964.5 649 74.9
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 4.3e-278 961.1 650 73.8
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 2.1e-277 958.7 645 73.0
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 8.1e-277 956.8 649 74.4
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.4e-276 956.1 649 74.4
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 2.4e-276 955.3 647 74.8
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.7e-274 949.1 644 74.4
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 6.4e-274 947.2 547 82.8
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 7.1e-273 943.7 657 72.3
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 3.5e-272 941.4 657 71.8
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 6.0e-272 940.6 651 72.0
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 2.3e-271 938.7 643 72.2
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 3.9e-271 937.9 654 72.6
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 6.7e-271 937.2 651 71.9
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 4.3e-270 934.5 651 71.4
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 9.6e-270 933.3 662 71.6
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 2.8e-269 931.8 650 71.7
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 3.7e-269 931.4 655 72.2
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 6.2e-269 930.6 654 72.2
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 1.2e-267 926.4 650 72.3
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 4.5e-267 924.5 636 72.3
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 3.0e-263 911.8 631 72.3
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 1.9e-262 909.1 611 72.2
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 9.6e-262 906.7 658 70.5
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 6.2e-261 904.0 624 72.1
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 6.2e-261 904.0 648 71.3
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 8.2e-261 903.7 604 73.8
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 4.5e-259 897.9 620 71.3
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 1.3e-258 896.3 666 69.4
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 2.2e-258 895.6 666 69.4
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 1.4e-257 892.9 652 69.5
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 1.4e-257 892.9 652 69.5
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 7.1e-257 890.6 561 76.6
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 4.6e-256 887.9 558 75.6
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 7.9e-256 887.1 526 80.0
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 1.3e-255 886.3 554 75.6
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 3.9e-255 884.8 668 67.8
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 8.7e-255 883.6 666 67.3
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 1.9e-254 882.5 626 71.4
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 2.5e-254 882.1 654 69.4
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 2.2e-253 879.0 660 69.2
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 2.2e-253 879.0 651 69.7
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 8.2e-253 877.1 653 69.5
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 8.2e-253 877.1 653 69.5
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 8.2e-253 877.1 653 69.5
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 8.2e-253 877.1 651 69.9
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 2.4e-252 875.5 644 69.9
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 2.4e-252 875.5 605 72.2
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 3.1e-252 875.2 649 68.7
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 1.0e-250 870.2 652 69.5
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 8.5e-250 867.1 683 64.4
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 2.5e-249 865.5 557 73.2
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 9.4e-249 863.6 536 77.2
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 4.8e-245 851.3 637 68.0
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 6.3e-245 850.9 673 65.7
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 2.0e-243 845.9 586 71.7
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 1.0e-242 843.6 620 68.1
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 4.2e-241 838.2 550 72.5
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 1.0e-239 833.6 630 67.3
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 1.4e-239 833.2 673 64.2
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 2.3e-239 832.4 646 65.2
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 2.3e-239 832.4 561 72.2
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 2.3e-239 832.4 586 70.8
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 2.2e-237 825.9 656 66.3
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 1.8e-236 822.8 660 64.2
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 9.1e-236 820.5 637 66.9
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 1.7e-234 816.2 548 71.4
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 2.2e-234 815.8 548 71.5
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 2.9e-234 815.5 550 71.1
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 9.4e-233 810.4 548 70.8
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 1.2e-232 810.1 668 62.6
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 2.7e-232 808.9 559 70.1
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 2.3e-231 805.8 648 66.2
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 8.8e-231 803.9 648 66.0
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 8.8e-231 803.9 648 66.0
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 5.7e-230 801.2 615 65.9
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 6.3e-229 797.7 662 62.2
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 1.1e-228 797.0 529 73.0
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 2.0e-227 792.7 642 64.2
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 3.8e-226 788.5 665 61.2
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 3.6e-224 781.9 655 64.3
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 3.6e-224 781.9 498 74.3
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 4.1e-220 768.5 604 63.7
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 9.1e-220 767.3 653 63.9
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 1.0e-218 763.8 615 64.9
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 4.0e-215 751.9 643 60.2
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 6.8e-215 751.1 656 59.5
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 3.4e-214 748.8 642 64.8
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 2.2e-213 746.1 528 71.2
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 8.3e-213 744.2 585 64.6
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 3.3e-209 732.3 651 60.4
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 4.0e-207 725.3 595 61.7
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 4.0e-207 725.3 652 59.0
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 1.9e-188 663.3 632 57.0
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 4.1e-188 662.1 578 60.4
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 2.1e-184 649.8 658 54.1
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 2.6e-182 642.9 642 55.8
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 3.3e-177 625.9 493 67.7
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 5.2e-175 618.6 424 69.8
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 9.9e-174 614.4 625 53.9
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 4.2e-172 609.0 500 63.4
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 2.8e-152 543.1 589 51.8
Eucgr.D02450 Eucalyptus grandis HOM05D004961 ORTHO05D006258 5.3e-151 538.9 335 74.9
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 1.5e-150 537.3 594 49.7
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 2.3e-146 523.5 414 65.5
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 8.2e-128 461.8 381 59.1
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 2.1e-123 447.2 406 55.7
Nn1g01213 Nelumbo nucifera HOM05D004961 ORTHO05D006258 2.8e-120 436.8 292 70.5
BcaB02g07397 Brassica carinata HOM05D004961 ORTHO05D006258 8.3e-96 355.5 351 56.1
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 3.1e-95 353.6 640 38.1
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 1.9e-84 317.8 618 34.6
BcaC07g40606 Brassica carinata HOM05D003135 ORTHO05D003715 1.1e-74 285.4 394 44.2
unitig_22.g6801 Utricularia gibba HOM05D004961 ORTHO05D006258 5.4e-63 246.5 212 58.5
BcaC07g40608 Brassica carinata HOM05D003135 ORTHO05D006258 9.0e-50 202.6 163 62.0
Zm00001eb010600 Zea mays HOM05D004961 ORTHO05D006258 1.3e-40 172.2 190 51.1
SMO115G0102 Selaginella moellendorffii HOM05D004961 ORTHO05D037335 1.7e-32 145.2 329 30.7
BcaNung07135 Brassica carinata HOM05D004961 ORTHO05D006258 1.4e-31 142.1 202 48.0
BcaNung07139 Brassica carinata HOM05D004961 ORTHO05D006258 5.1e-29 133.7 93 71.0
BcaNung07137 Brassica carinata HOM05D004961 ORTHO05D006258 3.7e-27 127.5 76 77.6
HanXRQChr16g0519231 Helianthus annuus HOM05D004961 ORTHO05D006258 1.0e-24 119.4 101 60.4
MELO3C015747.2 Cucumis melo HOM05D004961 ORTHO05D044953 1.9e-20 105.1 129 53.5
unitig_8.g3389 Utricularia gibba HOM05D004961 ORTHO05D006258 1.8e-10 72.0 137 40.9
BcaC07g40607 Brassica carinata HOM05D003135 ORTHO05D023343 7.7e-09 66.6 38 78.9
HanXRQChr12g0366651 Helianthus annuus HOM05D001845 ORTHO05D001878 1.0e-08 66.2 58 62.1
Actinidia31413 Actinidia chinensis HOM05D004961 ORTHO05D006258 6.1e-06 57.0 36 72.2


User provided reference genes

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