Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G041100 Manihot esculenta HOM05D001952 ORTHO05D004913 1.5e-281 972.2 494 100.0
Haze_00291 Corylus avellana HOM05D001952 ORTHO05D004913 1.0e-178 630.6 477 67.5
Potri.014G074900 Populus trichocarpa HOM05D001952 ORTHO05D004913 1.2e-177 627.1 498 66.3
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 4.4e-177 625.2 473 67.0
QL08p050945 Quercus lobata HOM05D001952 ORTHO05D004913 1.1e-175 620.5 495 63.8
Sabra14G0053600 Salix brachista HOM05D001952 ORTHO05D004913 2.0e-169 599.7 498 63.1
CSS0039830 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 9.8e-169 597.4 495 63.2
Atru.chr1.534 Acer truncatum HOM05D001952 ORTHO05D004913 3.7e-168 595.5 492 61.2
CSS0007104 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 3.7e-168 595.5 487 63.4
Ciclev10004825m.g Citrus clementina HOM05D001952 ORTHO05D004913 9.2e-167 590.9 493 61.1
CANSAT56G1737 Cannabis sativa HOM05D001952 ORTHO05D004913 2.0e-166 589.7 495 62.0
Hma1.2p1_0132F.1_g060740 Hydrangea macrophylla HOM05D001952 ORTHO05D004913 7.8e-166 587.8 494 62.6
TWI34G0947 Tripterygium wilfordii HOM05D001952 ORTHO05D004913 3.8e-165 585.5 496 61.7
Thecc.07G183300 Theobroma cacao HOM05D001952 ORTHO05D004913 6.1e-163 578.2 485 59.8
Duzib213G0290 Durio zibethinus HOM05D001952 ORTHO05D004913 4.0e-162 575.5 488 59.6
MD15G1435200 Malus domestica HOM05D001952 ORTHO05D004913 2.6e-161 572.8 485 59.0
Gorai.002G109800 Gossypium raimondii HOM05D001952 ORTHO05D004913 1.7e-160 570.1 485 59.2
RcHm_v2.0_Chr1g0351801 Rosa chinensis HOM05D001952 ORTHO05D004913 2.2e-160 569.7 487 60.6
COL.COLO4_19760 Corchorus olitorius HOM05D001952 ORTHO05D004913 1.4e-159 567.0 493 59.2
TAR375G0220 Trochodendron aralioides HOM05D001952 ORTHO05D004913 2.4e-159 566.2 488 60.5
Gohir.A01G099700 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.2e-158 563.9 485 58.4
Cpa.g.sc753.2 Carica papaya HOM05D001952 ORTHO05D004913 4.6e-158 562.0 490 59.2
Gohir.D01G084100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 6.0e-158 561.6 485 58.4
Rhsim05G0144200 Rhododendron simsii HOM05D001952 ORTHO05D004913 7.8e-158 561.2 485 60.2
FAN03G2676 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.3e-157 560.5 487 59.5
FAN10G1564 Fragaria x ananassa HOM05D001952 ORTHO05D004913 3.9e-157 558.9 487 59.3
Gohir.D01G083600 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.1e-156 557.4 485 58.4
FAN06G4730 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.5e-156 556.2 487 59.3
Lj6A55T16 Lonicera japonica HOM05D001952 ORTHO05D004913 9.5e-156 554.3 488 58.6
FvH4_7g08540 Fragaria vesca HOM05D001952 ORTHO05D004913 1.2e-155 553.9 487 59.1
FAN10G0713 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.2e-155 553.9 487 58.7
Oeu024552.2 Olea europaea HOM05D001952 ORTHO05D004913 6.2e-155 551.6 487 57.3
Glyma.18G215400 Glycine max HOM05D001952 ORTHO05D004913 1.1e-154 550.8 499 57.1
Lalb_Chr19g0127181 Lupinus albus HOM05D001952 ORTHO05D004913 2.3e-154 549.7 488 57.8
VMungo1383G2849 Vigna mungo HOM05D001952 ORTHO05D004913 6.8e-154 548.1 499 56.9
PGR004G1086 Punica granatum HOM05D001952 ORTHO05D004913 1.5e-153 547.0 486 57.4
Lj5g0018602 Lotus japonicus HOM05D001952 ORTHO05D004913 2.9e-152 542.7 486 57.6
FAN06G0866 Fragaria x ananassa HOM05D001952 ORTHO05D004913 4.9e-152 542.0 488 58.0
MELO3C003326.2 Cucumis melo HOM05D001952 ORTHO05D004913 1.1e-151 540.8 495 55.6
Eucgr.H05060 Eucalyptus grandis HOM05D001952 ORTHO05D004913 2.4e-151 539.7 482 57.1
FAN06G0845 Fragaria x ananassa HOM05D001952 ORTHO05D004913 7.0e-151 538.1 488 57.8
FvH4_7g12770 Fragaria vesca HOM05D001952 ORTHO05D004913 9.2e-151 537.7 488 57.6
Psat3g112920 Pisum sativum HOM05D001952 ORTHO05D004913 1.5e-148 530.4 484 55.4
Nitab4.5_0000603g0070 Nicotiana tabacum HOM05D001952 ORTHO05D004913 1.9e-148 530.0 488 55.9
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 4.3e-148 528.9 484 56.6
Ah.05g175860 Amaranthus hybridus HOM05D001952 ORTHO05D004913 5.6e-148 528.5 497 55.7
CAN.G1014.4 Capsicum annuum HOM05D001952 ORTHO05D004913 1.2e-147 527.3 475 57.3
Nitab4.5_0003477g0020 Nicotiana tabacum HOM05D001952 ORTHO05D004913 2.1e-147 526.6 488 55.5
THA.LOC104801468 Tarenaya hassleriana HOM05D001952 ORTHO05D004913 4.7e-147 525.4 487 56.7
arahy.Tifrunner.gnm1.ann1.U9VUHP Arachis hypogaea HOM05D001952 ORTHO05D004913 8.1e-147 524.6 489 54.8
arahy.Tifrunner.gnm1.ann1.Z6RYGL Arachis hypogaea HOM05D001952 ORTHO05D004913 8.1e-147 524.6 489 54.8
ClCG09G012850 Citrullus lanatus HOM05D001952 ORTHO05D004913 8.1e-147 524.6 494 55.5
AUR62004280 Chenopodium quinoa HOM05D001952 ORTHO05D004913 1.1e-146 524.2 492 55.7
AUR62033377 Chenopodium quinoa HOM05D001952 ORTHO05D004913 5.2e-146 521.9 492 55.9
RcHm_v2.0_Chr1g0313121 Rosa chinensis HOM05D001952 ORTHO05D004913 5.2e-146 521.9 487 57.3
Hund16968 Selenicereus undatus HOM05D001952 ORTHO05D004913 2.0e-145 520.0 486 55.8
Dinv32411 Davidia involucrata HOM05D001952 ORTHO05D004913 7.5e-145 518.1 372 68.5
PGSC0003DMG400016476 Solanum tuberosum HOM05D001952 ORTHO05D004913 7.5e-145 518.1 488 55.1
DCAR_006897 Daucus carota HOM05D001952 ORTHO05D004913 1.3e-144 517.3 487 55.0
Solyc02g080650.3 Solanum lycopersicum HOM05D001952 ORTHO05D004913 1.3e-144 517.3 488 54.7
Sopen02g025360 Solanum pennellii HOM05D001952 ORTHO05D004913 1.3e-144 517.3 488 55.1
arahy.Tifrunner.gnm1.ann1.7790ZZ Arachis hypogaea HOM05D001952 ORTHO05D004913 2.9e-144 516.2 490 53.9
Cc02_g37060 Coffea canephora HOM05D001952 ORTHO05D004913 1.1e-143 514.2 488 54.7
Lsat_1_v5_gn_7_6921 Lactuca sativa HOM05D001952 ORTHO05D004913 3.2e-143 512.7 495 54.1
Sed0000408 Sechium edule HOM05D001952 ORTHO05D004913 4.1e-143 512.3 491 54.0
EL10Ac1g00960 Beta vulgaris HOM05D001952 ORTHO05D004913 7.1e-143 511.5 494 53.6
Psat4g209120 Pisum sativum HOM05D001952 ORTHO05D004913 2.7e-142 509.6 483 54.9
AL6G53250 Arabidopsis lyrata HOM05D001952 ORTHO05D004913 6.0e-142 508.4 490 53.7
Sc02g0002270 Simmondsia chinensis HOM05D001952 ORTHO05D004913 3.9e-141 505.8 487 54.6
Peaxi162Scf00231g00244 Petunia axillaris HOM05D001952 ORTHO05D004913 1.1e-140 504.2 470 54.7
CARHR248310 Cardamine hirsuta HOM05D001952 ORTHO05D004913 2.5e-140 503.1 491 53.0
PGSC0003DMG402027917 Solanum tuberosum HOM05D001952 ORTHO05D004913 3.3e-140 502.7 473 55.4
CiPaw.02G175900 Carya illinoinensis HOM05D001952 ORTHO05D004913 4.3e-140 502.3 421 61.3
ECA236G1094 Erigeron canadensis HOM05D001952 ORTHO05D004913 7.3e-140 501.5 483 54.0
Migut.D01755 Erythranthe guttata HOM05D001952 ORTHO05D004913 3.6e-139 499.2 492 52.8
Medtr7g075940 Medicago truncatula HOM05D001952 ORTHO05D004913 6.8e-138 495.0 497 51.7
AT4G00231 Arabidopsis thaliana HOM05D001952 ORTHO05D004913 1.3e-136 490.7 490 52.4
Phvul.005G009900 Phaseolus vulgaris HOM05D001952 ORTHO05D004913 2.9e-136 489.6 490 53.1
Carub.0005s0957 Capsella rubella HOM05D001952 ORTHO05D004913 1.4e-135 487.3 490 51.2
Migut.L00973 Erythranthe guttata HOM05D001952 ORTHO05D004913 2.4e-135 486.5 495 51.3
Aqoxy2G02797 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 2.1e-134 483.4 485 50.3
Migut.L00878 Erythranthe guttata HOM05D001952 ORTHO05D004913 2.1e-134 483.4 483 52.2
SGA_v2.0_scaffold7G04047 Striga asiatica HOM05D001952 ORTHO05D004913 2.7e-134 483.0 487 52.2
Aqoxy5G00703 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 6.0e-134 481.9 483 50.3
Aa31LG4G9800 Aethionema arabicum HOM05D001952 ORTHO05D004913 2.3e-133 479.9 493 51.3
Peaxi162Scf00207g01356 Petunia axillaris HOM05D001952 ORTHO05D004913 2.3e-133 479.9 519 49.1
Aa31LG11G5430 Aethionema arabicum HOM05D001952 ORTHO05D004913 8.7e-133 478.0 492 51.4
Prupe.2G152200 Prunus persica HOM05D001952 ORTHO05D004913 1.9e-132 476.9 372 63.4
Thhalv10025092m.g Eutrema salsugineum HOM05D001952 ORTHO05D004913 9.6e-132 474.6 490 50.6
C09p00240 Brassica napus HOM05D001952 ORTHO05D004913 2.1e-131 473.4 488 51.8
HanXRQChr04g0122171 Helianthus annuus HOM05D001952 ORTHO05D004913 3.6e-131 472.6 484 50.2
BcaB01g02233 Brassica carinata HOM05D001952 ORTHO05D004913 6.2e-131 471.9 495 51.3
A09p00620 Brassica napus HOM05D001952 ORTHO05D004913 6.2e-131 471.9 488 51.8
BraA09t35698Z Brassica rapa HOM05D001952 ORTHO05D004913 1.1e-130 471.1 488 51.6
SalBow7G2566 Salvia bowleyana HOM05D001952 ORTHO05D004913 4.0e-130 469.2 479 51.8
BolC9t52959H Brassica oleracea HOM05D001952 ORTHO05D004913 2.0e-129 466.8 488 52.3
vmacro19640 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 4.4e-129 465.7 479 53.4
BcaC04g24187 Brassica carinata HOM05D001952 ORTHO05D004913 2.2e-128 463.4 485 51.5
TAR624G0159 Trochodendron aralioides HOM05D001952 ORTHO05D004913 6.0e-126 455.3 488 50.6
MBI05_g28393_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 3.9e-125 452.6 496 49.4
Lj4g0006210 Lotus japonicus HOM05D001952 ORTHO05D004913 4.8e-123 445.7 469 51.4
PSO478G1189 Papaver somniferum HOM05D001952 ORTHO05D004913 1.8e-122 443.7 498 48.4
CsaV3_3G049900 Cucumis sativus L. HOM05D001952 ORTHO05D004913 3.4e-121 439.5 385 57.4
unitig_0.g170 Utricularia gibba HOM05D001952 ORTHO05D004913 1.3e-120 437.6 485 47.8
MBI17_g11655_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 8.4e-120 434.9 487 48.7
PSO782G1679 Papaver somniferum HOM05D001952 ORTHO05D004913 2.4e-119 433.3 498 47.6
Gohir.A01G099100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.3e-117 427.6 485 48.7
Sp6g00320 Schrenkiella parvula HOM05D001952 ORTHO05D004913 1.1e-116 424.5 490 48.0
Carub.0006s2681 Capsella rubella HOM05D001952 ORTHO05D004913 1.4e-106 391.0 437 47.8
ATR0820G267 Amborella trichopoda HOM05D001952 ORTHO05D004913 7.6e-105 385.2 525 41.3
Os03g0118900 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D004913 3.9e-101 372.9 466 44.0
Aa31LG10G10140 Aethionema arabicum HOM05D001952 ORTHO05D004913 4.8e-99 365.9 416 47.4
Hund09554 Selenicereus undatus HOM05D001952 ORTHO05D004913 2.4e-98 363.6 425 48.9
MD07G1124700 Malus domestica HOM05D001952 ORTHO05D004913 1.1e-92 344.7 327 53.5
TPR.G6584 Trifolium pratense HOM05D001952 ORTHO05D004913 1.5e-92 344.4 288 59.7
Zm00001eb001350 Zea mays HOM05D001952 ORTHO05D004913 2.5e-92 343.6 477 42.1
vmacro08923 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 1.4e-90 337.8 375 48.8
TPR.G13243 Trifolium pratense HOM05D001952 ORTHO05D004913 2.6e-89 333.6 287 57.8
GSVIVG01026499001 Vitis vinifera HOM05D001952 ORTHO05D008796 2.5e-87 327.0 366 50.8
CDE01G0692 Ceratophyllum demersum HOM05D001952 ORTHO05D004913 3.2e-87 326.6 495 39.2
TPR.G18232 Trifolium pratense HOM05D001952 ORTHO05D004913 2.1e-86 323.9 287 57.5
FAN01G0405 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.8e-83 313.5 487 39.4
Ca_07850_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 4.8e-83 312.8 269 59.5
PSO781G0092 Papaver somniferum HOM05D001952 ORTHO05D004913 9.4e-79 298.5 495 39.0
Gorai.002G109400 Gossypium raimondii HOM05D001952 ORTHO05D004913 3.6e-78 296.6 417 42.0
Eucgr.I00845 Eucalyptus grandis HOM05D001952 ORTHO05D004913 6.1e-78 295.8 356 44.9
Eucgr.I00835 Eucalyptus grandis HOM05D001952 ORTHO05D004913 2.4e-74 283.9 375 43.5
SEGI_14537 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 7.7e-73 278.9 425 38.8
MD02G1196600 Malus domestica HOM05D001952 ORTHO05D004913 5.0e-72 276.2 292 47.9
Lj1g0014823 Lotus japonicus HOM05D001952 ORTHO05D004913 1.8e-66 257.7 292 50.7
Glyma.09G276502 Glycine max HOM05D001952 ORTHO05D004913 7.7e-65 252.3 233 53.6
Cfa001612 Carpinus fangiana HOM05D001952 ORTHO05D004913 3.2e-63 246.9 184 69.6
Pp3c21_1420 Physcomitrium patens HOM05D001952 ORTHO05D004913 1.8e-61 241.1 540 31.3
SMO351G0039 Selaginella moellendorffii HOM05D001952 ORTHO05D004913 3.0e-61 240.4 488 34.0
PSO781G0068 Papaver somniferum HOM05D001952 ORTHO05D004913 1.8e-58 231.1 494 32.0
PSO541G1892 Papaver somniferum HOM05D001952 ORTHO05D004913 2.4e-58 230.7 497 32.6
Migut.D01751 Erythranthe guttata HOM05D001952 ORTHO05D004913 3.1e-58 230.3 230 50.9
Lj6A55T17 Lonicera japonica HOM05D001952 ORTHO05D004913 3.1e-58 230.3 254 51.6
PSO541G2051 Papaver somniferum HOM05D001952 ORTHO05D004913 3.1e-58 230.3 321 42.1
Mapoly0062s0112 Marchantia polymorpha HOM05D001952 ORTHO05D004913 5.9e-57 226.1 590 31.0
SEGI_36330 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 7.7e-57 225.7 373 37.8
AagrBONN_evm.TU.Sc2ySwM_117.782 Anthoceros agrestis HOM05D001952 ORTHO05D004913 1.5e-55 221.5 474 32.7
PSO782G4203 Papaver somniferum HOM05D001952 ORTHO05D004913 4.7e-54 216.5 183 59.6
TPR.G34261 Trifolium pratense HOM05D001952 ORTHO05D004913 3.0e-53 213.8 159 64.8
SEGI_08371 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 8.3e-51 205.7 487 30.8
Potri.008G158901 Populus trichocarpa HOM05D001952 ORTHO05D004913 1.2e-49 201.8 171 60.2
PSO781G0254 Papaver somniferum HOM05D001952 ORTHO05D004913 1.8e-45 188.0 429 31.9
TPR.G34267 Trifolium pratense HOM05D001952 ORTHO05D004913 2.3e-45 187.6 376 35.4
MBI17_g11657_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 5.8e-44 183.0 278 40.3
TPR.G37851 Trifolium pratense HOM05D001952 ORTHO05D004913 5.8e-44 183.0 404 32.4
CBR_g31682 Chara braunii HOM05D001952 ORTHO05D004913 1.3e-43 181.8 616 25.0
TPR.G23686 Trifolium pratense HOM05D001952 ORTHO05D012360 1.2e-41 175.3 454 30.8
Peaxi162Scf00153g01322 Petunia axillaris HOM05D001952 ORTHO05D004913 8.6e-40 169.1 256 43.0
HPP92_001565 Vanilla planifolia HOM05D001952 ORTHO05D004913 1.2e-38 165.2 268 36.9
MD07G1124800 Malus domestica HOM05D001952 ORTHO05D004913 6.4e-35 152.9 137 56.9
Ca_07851_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 7.0e-34 149.4 122 54.1
Oeu061480.1 Olea europaea HOM05D001952 ORTHO05D004913 9.2e-34 149.1 473 28.3
Sabra14G0053500 Salix brachista HOM05D001952 ORTHO05D004913 1.0e-32 145.6 305 34.8
Sopen04g024480 Solanum pennellii HOM05D001952 ORTHO05D004913 1.2e-28 132.1 93 68.8
Nitab4.5_0001040g0030 Nicotiana tabacum HOM05D001952 ORTHO05D004913 1.5e-28 131.7 116 62.1
TPR.G6606 Trifolium pratense HOM05D001952 ORTHO05D004913 5.4e-26 123.2 158 45.6
FAN03G2381 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.7e-25 120.9 98 58.2
arahy.Tifrunner.gnm1.ann1.LMZ4B6 Arachis hypogaea HOM05D001952 ORTHO05D004913 3.5e-25 120.6 115 53.9
arahy.Tifrunner.gnm1.ann1.6B0T5V Arachis hypogaea HOM05D001952 ORTHO05D004913 1.9e-23 114.8 146 41.8
Duzib268G0813 Durio zibethinus HOM05D001952 ORTHO05D004913 1.8e-21 108.2 134 47.8
PSO782G4156 Papaver somniferum HOM05D001952 ORTHO05D004913 4.4e-20 103.6 134 41.8
PSO326G0001 Papaver somniferum HOM05D001952 ORTHO05D004913 1.3e-19 102.1 133 42.1
Cre08.g374300 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D004913 6.4e-19 99.8 103 44.7
MCO07G121 Micromonas commoda HOM05D001952 ORTHO05D004913 1.6e-17 95.1 231 28.6
FAN03G1970 Fragaria x ananassa HOM05D001952 ORTHO05D004913 5.4e-10 70.1 72 51.4


User provided reference genes

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