Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G040200 Manihot esculenta HOM05D007580 ORTHO05D009620 3.8e-85 318.2 165 100.0
Manes.01G262404 Manihot esculenta HOM05D007580 ORTHO05D009620 4.1e-55 218.4 166 71.7
Potri.014G077000 Populus trichocarpa HOM05D007580 ORTHO05D009620 9.2e-47 190.7 170 64.1
Potri.002G153000 Populus trichocarpa HOM05D007580 ORTHO05D009620 3.5e-46 188.7 166 65.7
Sabra14G0055200 Salix brachista HOM05D007580 ORTHO05D009620 3.5e-46 188.7 171 64.9
Sabra02G0121300 Salix brachista HOM05D007580 ORTHO05D009620 9.5e-44 180.6 166 63.3
TWI14G1086 Tripterygium wilfordii HOM05D007580 ORTHO05D009620 1.2e-43 180.3 173 57.2
QL08p050656 Quercus lobata HOM05D007580 ORTHO05D009620 4.7e-43 178.3 183 57.9
CANSAT56G4452 Cannabis sativa HOM05D007580 ORTHO05D009620 4.0e-42 175.3 163 62.6
Cfa004181 Carpinus fangiana HOM05D007580 ORTHO05D009620 3.4e-41 172.2 160 62.5
Haze_15227 Corylus avellana HOM05D007580 ORTHO05D009620 7.6e-41 171.0 160 61.9
Lalb_Chr01g0021151 Lupinus albus HOM05D007580 ORTHO05D009620 6.4e-40 167.9 177 57.6
Ciclev10023708m.g Citrus clementina HOM05D007580 ORTHO05D009620 8.4e-40 167.5 176 57.4
FAN06G3292 Fragaria x ananassa HOM05D007580 ORTHO05D009620 1.1e-39 167.2 165 58.2
FAN06G5062 Fragaria x ananassa HOM05D007580 ORTHO05D009620 1.1e-39 167.2 165 58.2
FAN10G2444 Fragaria x ananassa HOM05D007580 ORTHO05D009620 1.9e-39 166.4 163 58.3
COL.COLO4_12626 Corchorus olitorius HOM05D007580 ORTHO05D009620 2.4e-39 166.0 190 53.2
Duzib133G0099 Durio zibethinus HOM05D007580 ORTHO05D009620 3.2e-39 165.6 175 56.6
FAN03G2022 Fragaria x ananassa HOM05D007580 ORTHO05D009620 4.1e-39 165.2 165 58.8
Prupe.2G154500 Prunus persica HOM05D007580 ORTHO05D009620 1.0e-37 160.6 157 59.2
RcHm_v2.0_Chr1g0352211 Rosa chinensis HOM05D007580 ORTHO05D009620 1.3e-37 160.2 165 58.2
Thecc.01G368700 Theobroma cacao HOM05D007580 ORTHO05D009620 1.3e-37 160.2 194 50.5
ClCG06G000100 Citrullus lanatus HOM05D007580 ORTHO05D009620 6.6e-37 157.9 186 52.7
FAN01G0874 Fragaria x ananassa HOM05D007580 ORTHO05D009620 6.6e-37 157.9 165 56.4
Gohir.A08G129400 Gossypium hirsutum HOM05D007580 ORTHO05D009620 6.6e-37 157.9 189 54.0
Duzib138G0841 Durio zibethinus HOM05D007580 ORTHO05D009620 8.6e-37 157.5 175 54.3
Gorai.004G156400 Gossypium raimondii HOM05D007580 ORTHO05D009620 1.5e-36 156.8 181 54.1
Gohir.D08G150700 Gossypium hirsutum HOM05D007580 ORTHO05D009620 1.2e-35 153.7 181 53.6
MD07G1128600 Malus domestica HOM05D007580 ORTHO05D009620 8.1e-35 151.0 156 55.8
Medtr7g076270 Medicago truncatula HOM05D007580 ORTHO05D009620 1.1e-34 150.6 163 55.8
MELO3C022528.2 Cucumis melo HOM05D007580 ORTHO05D009620 1.4e-34 150.2 170 54.7
CsaV3_6G005830 Cucumis sativus L. HOM05D007580 ORTHO05D009620 2.4e-34 149.4 174 52.3
TPR.G37829 Trifolium pratense HOM05D007580 ORTHO05D009620 5.2e-34 148.3 159 56.0
Sed0005443 Sechium edule HOM05D007580 ORTHO05D009620 2.0e-33 146.4 167 56.9
TAR656G0002 Trochodendron aralioides HOM05D007580 ORTHO05D009620 4.4e-33 145.2 164 53.7
TAR375G0300 Trochodendron aralioides HOM05D007580 ORTHO05D009620 7.6e-33 144.4 155 52.3
GSVIVG01027528001 Vitis vinifera HOM05D007580 ORTHO05D009620 7.6e-33 144.4 151 57.6
CiPaw.01G053500 Carya illinoinensis HOM05D007580 ORTHO05D009620 9.9e-33 144.1 139 59.0
TAR003G0002 Trochodendron aralioides HOM05D007580 ORTHO05D009620 9.9e-33 144.1 164 53.0
PGSC0003DMG400017056 Solanum tuberosum HOM05D007580 ORTHO05D009620 9.3e-31 137.5 160 50.0
Nn1g01349 Nelumbo nucifera HOM05D007580 ORTHO05D009620 1.2e-30 137.1 159 51.6
Hma1.2p1_0398F.1_g143830 Hydrangea macrophylla HOM05D007580 ORTHO05D009620 1.6e-30 136.7 185 48.6
Solyc01g091790.2 Solanum lycopersicum HOM05D007580 ORTHO05D009620 2.7e-30 136.0 159 49.1
Sopen01g037570 Solanum pennellii HOM05D007580 ORTHO05D009620 1.3e-29 133.7 156 50.0
Glyma.18G227800 Glycine max HOM05D007580 ORTHO05D009620 3.9e-29 132.1 162 52.5
Oeu024417.1 Olea europaea HOM05D007580 ORTHO05D009620 8.7e-29 131.0 166 48.2
VMungo1383G0280 Vigna mungo HOM05D007580 ORTHO05D009620 8.7e-29 131.0 164 52.4
CSS0034624 Camellia sinensis var. sinensis HOM05D007580 ORTHO05D009620 1.5e-28 130.2 154 53.9
CiPaw.01G052900 Carya illinoinensis HOM05D007580 ORTHO05D009620 1.9e-28 129.8 150 52.7
Aqoxy7G00453 Aquilegia oxysepala HOM05D007580 ORTHO05D009620 5.6e-28 128.3 161 48.4
Carub.0001s0037 Capsella rubella HOM05D007580 ORTHO05D009620 9.6e-28 127.5 149 48.3
Actinidia33444 Actinidia chinensis HOM05D007580 ORTHO05D009620 2.1e-27 126.3 154 47.4
Rhsim01G0155700 Rhododendron simsii HOM05D007580 ORTHO05D009620 1.1e-26 124.0 169 47.9
Ca_07865_v3 Cicer arietinum L. HOM05D007580 ORTHO05D009620 3.1e-26 122.5 166 49.4
CARHR000490 Cardamine hirsuta HOM05D007580 ORTHO05D009620 9.0e-26 120.9 149 47.7
AL1G10480 Arabidopsis lyrata HOM05D007580 ORTHO05D009620 2.6e-25 119.4 148 51.4
AT1G01840 Arabidopsis thaliana HOM05D007580 ORTHO05D009620 2.6e-25 119.4 153 49.7
Cpa.g.sc18.198 Carica papaya HOM05D007580 ORTHO05D009620 4.5e-25 118.6 141 54.6
PGR031G3829 Punica granatum HOM05D007580 ORTHO05D009620 5.8e-25 118.2 182 43.4
Psat0s1132g0080 Pisum sativum HOM05D007580 ORTHO05D009620 9.9e-25 117.5 171 48.0
DCAR_006906 Daucus carota HOM05D007580 ORTHO05D009620 2.2e-24 116.3 155 47.1
Thhalv10009990m.g Eutrema salsugineum HOM05D007580 ORTHO05D009620 2.9e-24 115.9 152 46.7
BolC5t28812H Brassica oleracea HOM05D007580 ORTHO05D009620 8.4e-24 114.4 156 46.2
Sc23g0003300 Simmondsia chinensis HOM05D007580 ORTHO05D009620 8.4e-24 114.4 170 47.1
Nitab4.5_0004550g0100 Nicotiana tabacum HOM05D007580 ORTHO05D009620 1.4e-23 113.6 177 41.2
Phvul.008G070400 Phaseolus vulgaris HOM05D007580 ORTHO05D009620 1.9e-23 113.2 142 50.0
BcaB03g13622 Brassica carinata HOM05D007580 ORTHO05D009620 2.4e-23 112.8 153 46.4
Migut.B01687 Erythranthe guttata HOM05D007580 ORTHO05D009620 2.4e-23 112.8 167 44.9
A10p00190 Brassica napus HOM05D007580 ORTHO05D009620 5.4e-23 111.7 152 46.1
Lsat_1_v5_gn_7_8361 Lactuca sativa HOM05D007580 ORTHO05D009620 5.4e-23 111.7 155 46.5
BraA10t42299Z Brassica rapa HOM05D007580 ORTHO05D009620 1.2e-22 110.5 152 46.1
Sp1g00440 Schrenkiella parvula HOM05D007580 ORTHO05D009620 7.9e-22 107.8 152 43.4
Aa31LG1G11200 Aethionema arabicum HOM05D007580 ORTHO05D009620 1.3e-21 107.1 161 44.7
Nitab4.5_0010430g0050 Nicotiana tabacum HOM05D007580 ORTHO05D009620 5.1e-21 105.1 157 44.6
Peaxi162Scf00021g00055 Petunia axillaris HOM05D007580 ORTHO05D009620 1.9e-20 103.2 169 42.6
Lsat_1_v5_gn_7_8421 Lactuca sativa HOM05D007580 ORTHO05D009620 3.3e-20 102.4 155 44.5
THA.LOC104814091 Tarenaya hassleriana HOM05D007580 ORTHO05D009620 9.6e-20 100.9 149 46.3
PSO478G4117 Papaver somniferum HOM05D007580 ORTHO05D009620 1.1e-18 97.4 192 40.6
PSO782G0900 Papaver somniferum HOM05D007580 ORTHO05D009620 3.1e-18 95.9 188 39.4
C05p00230 Brassica napus HOM05D007580 ORTHO05D009620 4.0e-18 95.5 154 41.6
PSO782G1514 Papaver somniferum HOM05D007580 ORTHO05D009620 4.0e-18 95.5 189 39.2
Glyma.09G264200 Glycine max HOM05D007580 ORTHO05D009620 1.7e-16 90.1 122 50.8
HanXRQChr04g0121781 Helianthus annuus HOM05D007580 ORTHO05D009620 1.7e-16 90.1 150 41.3
SGA_v2.0_scaffold95G28871 Striga asiatica HOM05D007580 ORTHO05D009620 6.4e-16 88.2 162 41.4
vmacro20972 Vaccinium macrocarpon HOM05D007580 ORTHO05D009620 2.4e-15 86.3 90 53.3
ECA236G4638 Erigeron canadensis HOM05D007580 ORTHO05D009620 3.2e-15 85.9 158 41.1
Ah.05g176020 Amaranthus hybridus HOM05D007580 ORTHO05D009620 1.6e-14 83.6 156 38.5
MBI12_g06406_MAGBIO Magnolia biondii HOM05D007580 ORTHO05D009620 1.0e-13 80.9 155 41.3
MBI12_g45243_MAGBIO Magnolia biondii HOM05D007580 ORTHO05D009620 3.0e-13 79.3 155 40.0
Lj1g0023268 Lotus japonicus HOM05D007580 ORTHO05D009620 3.3e-12 75.9 154 39.0
AUR62026657 Chenopodium quinoa HOM05D007580 ORTHO05D009620 2.1e-11 73.2 133 43.6
AUR62033366 Chenopodium quinoa HOM05D007580 ORTHO05D009620 2.8e-11 72.8 113 43.4
SalBow3G0911 Salvia bowleyana HOM05D007580 ORTHO05D009620 8.1e-11 71.2 169 35.5
Dinv32421 Davidia involucrata HOM05D007580 ORTHO05D009620 4.5e-09 65.5 113 41.6
FAN10G0406 Fragaria x ananassa HOM05D007580 ORTHO05D009620 4.9e-08 62.0 61 57.4


User provided reference genes

Program Settings