Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G022300 Manihot esculenta HOM05D006960 ORTHO05D008699 3.9e-216 754.6 405 100.0
Gohir.D11G102000 Gossypium hirsutum HOM05D006960 ORTHO05D008699 7.2e-85 318.5 251 68.1
TWI14G0597 Tripterygium wilfordii HOM05D006960 ORTHO05D008699 9.4e-85 318.2 251 67.7
Gorai.007G109000 Gossypium raimondii HOM05D006960 ORTHO05D008699 1.6e-84 317.4 251 68.5
Ciclev10022060m.g Citrus clementina HOM05D006960 ORTHO05D008699 8.0e-84 315.1 252 67.5
COL.COLO4_21448 Corchorus olitorius HOM05D006960 ORTHO05D008699 1.0e-83 314.7 251 67.7
Gohir.A11G097200 Gossypium hirsutum HOM05D006960 ORTHO05D008699 1.0e-83 314.7 248 68.1
Potri.014G099500 Populus trichocarpa HOM05D006960 ORTHO05D008699 1.8e-83 313.9 251 67.3
Thecc.01G341400 Theobroma cacao HOM05D006960 ORTHO05D008699 3.9e-83 312.8 251 67.7
Haze_15666 Corylus avellana HOM05D000451 ORTHO05D000351 5.2e-83 312.4 248 68.5
CSS0028122 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 7.4e-82 308.5 251 66.5
CSS0036785 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 4.8e-81 305.8 251 66.1
Prupe.2G189500 Prunus persica HOM05D006960 ORTHO05D008699 1.4e-80 304.3 251 66.1
QL04p060559 Quercus lobata HOM05D006960 ORTHO05D008699 1.8e-80 303.9 251 66.5
Atru.chr5.678 Acer truncatum HOM05D006960 ORTHO05D008699 4.1e-80 302.8 251 64.9
ClCG09G009460 Citrullus lanatus HOM05D006960 ORTHO05D008699 1.7e-78 297.4 251 63.7
Rhsim04G0222700 Rhododendron simsii HOM05D006960 ORTHO05D008699 2.2e-78 297.0 251 66.1
Sed0021558 Sechium edule HOM05D006960 ORTHO05D008699 5.0e-78 295.8 251 64.1
Rhsim01G0172900 Rhododendron simsii HOM05D006960 ORTHO05D008699 6.5e-78 295.4 251 65.7
MELO3C024139.2 Cucumis melo HOM05D006960 ORTHO05D008699 1.9e-77 293.9 251 63.3
GSVIVG01027159001 Vitis vinifera HOM05D006960 ORTHO05D008699 2.5e-77 293.5 243 67.9
ECA236G0577 Erigeron canadensis HOM05D006960 ORTHO05D008699 4.2e-77 292.7 251 64.9
vmacro12673 Vaccinium macrocarpon HOM05D006960 ORTHO05D008699 5.5e-77 292.4 251 64.5
CANSAT56G1276 Cannabis sativa HOM05D006960 ORTHO05D008699 1.2e-76 291.2 254 64.2
FvH4_7g16680 Fragaria vesca HOM05D006960 ORTHO05D008699 1.2e-76 291.2 254 62.6
FAN06G3195 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.2e-76 291.2 254 62.6
FAN06G2002 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.0e-75 288.1 254 61.8
Lalb_Chr06g0163941 Lupinus albus HOM05D006960 ORTHO05D008699 1.8e-75 287.3 249 63.1
FAN10G0984 Fragaria x ananassa HOM05D006960 ORTHO05D008699 2.3e-75 287.0 254 61.8
MD07G1150800 Malus domestica HOM05D006960 ORTHO05D008699 4.0e-75 286.2 252 63.5
Sabra14G0073000 Salix brachista HOM05D006960 ORTHO05D008699 4.0e-75 286.2 224 67.9
Cpa.g.sc46.111 Carica papaya HOM05D006960 ORTHO05D008699 5.2e-75 285.8 251 64.9
Nitab4.5_0004506g0020 Nicotiana tabacum HOM05D006960 ORTHO05D008699 8.8e-75 285.0 251 63.3
FAN01G3090 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.2e-74 284.6 254 61.4
TAR629G1073 Trochodendron aralioides HOM05D006960 ORTHO05D008699 2.0e-74 283.9 251 62.9
RcHm_v2.0_Chr1g0359831 Rosa chinensis HOM05D006960 ORTHO05D008699 3.3e-74 283.1 255 61.6
PGR142G3971 Punica granatum HOM05D006960 ORTHO05D008699 1.7e-73 280.8 257 65.4
DCAR_021504 Daucus carota HOM05D006960 ORTHO05D008699 2.2e-73 280.4 254 62.6
Nitab4.5_0000258g0220 Nicotiana tabacum HOM05D006960 ORTHO05D008699 2.2e-73 280.4 251 62.5
Eucgr.E00049 Eucalyptus grandis HOM05D006960 ORTHO05D008699 3.7e-73 279.6 250 63.2
FAN10G4095 Fragaria x ananassa HOM05D006960 ORTHO05D008699 8.2e-73 278.5 247 61.5
PGSC0003DMG400007011 Solanum tuberosum HOM05D006960 ORTHO05D008699 8.2e-73 278.5 252 62.3
Actinidia20248 Actinidia chinensis HOM05D000567 ORTHO05D001981 1.1e-72 278.1 237 62.4
EL10Ac1g00259 Beta vulgaris HOM05D006960 ORTHO05D008699 1.1e-72 278.1 251 60.2
Dinv22299 Davidia involucrata HOM05D006960 ORTHO05D008699 1.8e-72 277.3 237 64.6
Lj5g0001318 Lotus japonicus HOM05D006960 ORTHO05D008699 3.1e-72 276.6 247 63.6
Ca_11259_v3 Cicer arietinum L. HOM05D006960 ORTHO05D008699 5.3e-72 275.8 246 62.6
Glyma.20G102700 Glycine max HOM05D006960 ORTHO05D008699 5.3e-72 275.8 246 63.4
CAN.G1178.29 Capsicum annuum HOM05D006960 ORTHO05D008699 9.1e-72 275.0 252 61.1
Sopen05g029010 Solanum pennellii HOM05D006960 ORTHO05D008699 2.0e-71 273.9 243 63.0
Solyc05g050570.3 Solanum lycopersicum HOM05D006960 ORTHO05D008699 2.7e-71 273.5 243 63.0
Aqoxy6G00316 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 1.0e-70 271.6 252 61.5
Psat6g234040 Pisum sativum HOM05D006960 ORTHO05D008699 1.3e-70 271.2 246 61.8
Lsat_1_v5_gn_8_13101 Lactuca sativa HOM05D006960 ORTHO05D008699 2.2e-70 270.4 252 61.9
HanXRQChr06g0170731 Helianthus annuus HOM05D006960 ORTHO05D008699 2.9e-70 270.0 242 62.8
AUR62004502 Chenopodium quinoa HOM05D006960 ORTHO05D008699 6.5e-70 268.9 252 58.3
MSTRG.17349 Avicennia marina HOM05D006960 ORTHO05D008699 1.1e-69 268.1 256 59.8
PSO063G6262 Papaver somniferum HOM05D006960 ORTHO05D008699 1.1e-69 268.1 251 60.2
Cc01_g12480 Coffea canephora HOM05D006960 ORTHO05D008699 3.2e-69 266.5 253 58.9
Sc01g0002630 Simmondsia chinensis HOM05D000016 ORTHO05D007083 1.6e-68 264.2 251 59.4
VMungo0720G2201 Vigna mungo HOM05D006960 ORTHO05D008699 4.7e-68 262.7 246 60.2
TPR.G4075 Trifolium pratense HOM05D006960 ORTHO05D008699 1.4e-67 261.2 280 55.4
Oeu007886.1 Olea europaea HOM05D006960 ORTHO05D008699 2.3e-67 260.4 254 58.7
Oeu014974.1 Olea europaea HOM05D006960 ORTHO05D008699 2.3e-67 260.4 254 58.7
Migut.B01880 Erythranthe guttata HOM05D006960 ORTHO05D008699 8.8e-67 258.5 255 60.8
Medtr1g114590 Medicago truncatula HOM05D006960 ORTHO05D008699 8.8e-67 258.5 254 59.4
Hund16718 Selenicereus undatus HOM05D006960 ORTHO05D008699 1.5e-66 257.7 236 61.0
Medtr5g015740 Medicago truncatula HOM05D006960 ORTHO05D008699 2.0e-66 257.3 254 59.4
Nn8g41032 Nelumbo nucifera HOM05D006960 ORTHO05D008699 2.0e-66 257.3 220 65.5
Thhalv10008544m.g Eutrema salsugineum HOM05D006960 ORTHO05D008699 2.6e-66 256.9 255 58.0
Peaxi162Scf00716g00022 Petunia axillaris HOM05D006960 ORTHO05D008699 4.4e-66 256.1 218 65.1
Phvul.007G014400 Phaseolus vulgaris HOM05D006960 ORTHO05D008699 4.4e-66 256.1 246 59.8
CARHR001180 Cardamine hirsuta HOM05D006960 ORTHO05D008699 5.7e-66 255.8 255 59.6
Sp1g01000 Schrenkiella parvula HOM05D006960 ORTHO05D008699 9.8e-66 255.0 252 58.7
BraA09t42243Z Brassica rapa HOM05D006960 ORTHO05D008699 2.2e-65 253.8 255 58.8
Carub.0001s0093 Capsella rubella HOM05D006960 ORTHO05D008699 2.8e-65 253.4 260 56.5
SalBow3G0783 Salvia bowleyana HOM05D006960 ORTHO05D008699 2.8e-65 253.4 257 58.8
AT1G01290 Arabidopsis thaliana HOM05D006960 ORTHO05D008699 4.8e-65 252.7 261 57.1
BolC8t52877H Brassica oleracea HOM05D006960 ORTHO05D008699 4.8e-65 252.7 255 58.0
A09p69060 Brassica napus HOM05D006960 ORTHO05D008699 6.3e-65 252.3 251 58.2
C08p53630 Brassica napus HOM05D006960 ORTHO05D008699 8.3e-65 251.9 251 58.2
PSO170G4910 Papaver somniferum HOM05D006960 ORTHO05D008699 1.1e-64 251.5 244 58.6
Aa31LG5G970 Aethionema arabicum HOM05D000451 ORTHO05D000351 3.1e-64 250.0 215 63.7
CAN.G1385.4 Capsicum annuum HOM05D006960 ORTHO05D008699 3.1e-64 250.0 216 63.9
Aqoxy3G01066 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 1.0e-62 245.0 218 62.4
AL1G11170 Arabidopsis lyrata HOM05D006960 ORTHO05D008699 2.9e-62 243.4 231 61.0
SGA_v2.0_scaffold22G09984 Striga asiatica HOM05D006960 ORTHO05D008699 6.6e-62 242.3 257 56.8
MBI06_g44795_MAGBIO Magnolia biondii HOM05D006960 ORTHO05D008699 8.6e-62 241.9 251 57.0
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 6.1e-60 235.7 164 74.4
arahy.Tifrunner.gnm1.ann1.CCVT8N Arachis hypogaea HOM05D006960 ORTHO05D008699 2.0e-58 230.7 160 75.0
Zm00001eb080710 Zea mays HOM05D006960 ORTHO05D008699 1.3e-57 228.0 222 58.6
unitig_899.g14796 Utricularia gibba HOM05D006960 ORTHO05D008699 1.8e-56 224.2 215 60.0
Os04g0460500 Oryza sativa ssp. japonica HOM05D006960 ORTHO05D008699 1.6e-55 221.1 225 55.1
HPP92_002925 Vanilla planifolia HOM05D006960 ORTHO05D008699 1.9e-53 214.2 168 66.7
ATR0602G026 Amborella trichopoda HOM05D006960 ORTHO05D008699 2.3e-51 207.2 217 55.3
AUR62014969 Chenopodium quinoa HOM05D006960 ORTHO05D008699 5.4e-48 196.1 252 46.8
Mapoly0053s0024 Marchantia polymorpha HOM05D006960 ORTHO05D008699 3.9e-46 189.9 226 54.0
Pp3c20_11370 Physcomitrium patens HOM05D006960 ORTHO05D008699 2.1e-44 184.1 237 48.1
CsaV3_7G025390 Cucumis sativus L. HOM05D006960 ORTHO05D008699 8.9e-43 178.7 181 54.1
SMO351G0341 Selaginella moellendorffii HOM05D006960 ORTHO05D008699 1.5e-42 177.9 156 62.2
MCO01G113 Micromonas commoda HOM05D006960 ORTHO05D008699 2.4e-40 170.6 155 59.4
AUR62023452 Chenopodium quinoa HOM05D000040 ORTHO05D000759 9.2e-40 168.7 229 46.3
Cre08.g361050 Chlamydomonas reinhardtii HOM05D006960 ORTHO05D008699 1.8e-35 154.5 154 54.5
CBR_g23014 Chara braunii HOM05D006960 ORTHO05D008699 2.3e-35 154.1 154 54.5
CDE10G0236 Ceratophyllum demersum HOM05D006960 ORTHO05D008699 3.1e-35 153.7 242 44.2
HPP92_028636 Vanilla planifolia HOM05D006960 ORTHO05D008699 2.6e-34 150.6 255 40.8
CDE10G0916 Ceratophyllum demersum HOM05D000108 ORTHO05D001781 2.3e-30 137.5 112 63.4
VMungo0964G0001 Vigna mungo HOM05D006960 ORTHO05D008699 1.5e-29 134.8 156 48.1
FAN03G0019 Fragaria x ananassa HOM05D006960 ORTHO05D008699 3.6e-28 130.2 93 68.8
CiPaw.01G076800 Carya illinoinensis HOM05D006960 ORTHO05D008699 1.5e-26 124.8 132 55.3
Cpa.g.sc96.27 Carica papaya HOM05D006960 ORTHO05D008699 3.0e-22 110.5 157 46.5
TAR636G2744 Trochodendron aralioides HOM05D006960 ORTHO05D008699 5.6e-21 106.3 102 56.9
Cfa022703 Carpinus fangiana HOM05D006960 ORTHO05D008699 1.2e-20 105.1 162 42.6
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 9.9e-18 95.5 116 43.1
PRCOL_00000953 Prasinoderma coloniale HOM05D006960 ORTHO05D008699 1.5e-10 71.6 154 34.4
Gorai.011G078500 Gossypium raimondii HOM05D006960 ORTHO05D008699 4.5e-10 70.1 66 54.5
Gorai.002G097600 Gossypium raimondii HOM05D006960 ORTHO05D018836 5.8e-10 69.7 66 56.1
Gohir.D08G121100 Gossypium hirsutum HOM05D006960 ORTHO05D008699 9.9e-10 68.9 66 54.5
Gohir.D10G162832 Gossypium hirsutum HOM05D006960 ORTHO05D008699 9.9e-10 68.9 66 54.5
Gohir.D05G312133 Gossypium hirsutum HOM05D006960 ORTHO05D008699 3.8e-09 67.0 66 53.0
Gohir.D01G074900 Gossypium hirsutum HOM05D006960 ORTHO05D008699 4.6e-07 60.1 63 49.2


User provided reference genes

Program Settings