Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G021500 Manihot esculenta HOM05D007265 ORTHO05D009118 2.4e-27 124.8 65 100.0
Manes.01G244801 Manihot esculenta HOM05D007265 ORTHO05D009118 2.3e-25 118.2 65 95.4
Oeu008708.1 Olea europaea HOM05D007265 ORTHO05D009118 1.3e-20 102.4 63 81.0
Cc02_g39560 Coffea canephora HOM05D007265 ORTHO05D009118 2.2e-20 101.7 63 81.0
Nitab4.5_0003865g0020 Nicotiana tabacum HOM05D007265 ORTHO05D009118 2.2e-20 101.7 63 82.5
Nitab4.5_0000258g0270 Nicotiana tabacum HOM05D007265 ORTHO05D009118 2.9e-20 101.3 63 81.0
Thecc.01G340400 Theobroma cacao HOM05D007265 ORTHO05D009118 2.9e-20 101.3 63 84.1
CSS0038215 Camellia sinensis var. sinensis HOM05D007265 ORTHO05D009118 3.8e-20 100.9 63 82.5
Hma1.2p1_0390F.1_g142620 Hydrangea macrophylla HOM05D007265 ORTHO05D009118 3.8e-20 100.9 63 81.0
Nn1g00287 Nelumbo nucifera HOM05D007265 ORTHO05D009118 6.5e-20 100.1 63 81.0
Lj7E499T0 Lonicera japonica HOM05D007265 ORTHO05D009118 1.4e-19 99.0 63 77.8
Atru.chr5.686 Acer truncatum HOM05D007265 ORTHO05D009118 2.5e-19 98.2 63 77.8
MD01G1083600 Malus domestica HOM05D007265 ORTHO05D009118 4.2e-19 97.4 63 79.4
MD07G1152300 Malus domestica HOM05D007265 ORTHO05D009118 4.2e-19 97.4 63 79.4
PGR042G1917 Punica granatum HOM05D007265 ORTHO05D009118 4.2e-19 97.4 63 79.4
TAR374G1528 Trochodendron aralioides HOM05D007265 ORTHO05D009118 5.5e-19 97.1 60 83.3
GSVIVG01027169001 Vitis vinifera HOM05D007265 ORTHO05D009118 5.5e-19 97.1 63 77.8
PSO063G4371 Papaver somniferum HOM05D007265 ORTHO05D009118 7.1e-19 96.7 62 77.4
ATR0602G127 Amborella trichopoda HOM05D007265 ORTHO05D009118 9.3e-19 96.3 63 79.4
Oeu007878.1 Olea europaea HOM05D007265 ORTHO05D009118 9.3e-19 96.3 55 89.1
Duzib138G0325 Durio zibethinus HOM05D007265 ORTHO05D009118 1.2e-18 95.9 63 79.4
PSO170G4391 Papaver somniferum HOM05D007265 ORTHO05D009118 1.2e-18 95.9 62 77.4
CiPaw.01G077600 Carya illinoinensis HOM05D007265 ORTHO05D009118 1.6e-18 95.5 63 77.8
Gohir.A11G097900 Gossypium hirsutum HOM05D007265 ORTHO05D009118 1.6e-18 95.5 63 79.4
Gohir.D11G102600 Gossypium hirsutum HOM05D007265 ORTHO05D009118 1.6e-18 95.5 63 79.4
Gohir.D12G116700 Gossypium hirsutum HOM05D007265 ORTHO05D009118 1.6e-18 95.5 63 79.4
Prupe.2G190600 Prunus persica HOM05D007265 ORTHO05D009118 1.6e-18 95.5 63 77.8
MELO3C022263.2 Cucumis melo HOM05D007265 ORTHO05D009118 2.1e-18 95.1 63 74.6
Sed0002056 Sechium edule HOM05D007265 ORTHO05D009118 2.1e-18 95.1 63 76.2
Nitab4.5_0001763g0020 Nicotiana tabacum HOM05D007265 ORTHO05D009118 2.7e-18 94.7 63 77.8
AT2G46540 Arabidopsis thaliana HOM05D007265 ORTHO05D009118 3.5e-18 94.4 66 75.8
CsaV3_6G008500 Cucumis sativus L. HOM05D007265 ORTHO05D009118 3.5e-18 94.4 63 74.6
DCAR_005402 Daucus carota HOM05D007265 ORTHO05D009118 3.5e-18 94.4 63 74.6
HanXRQChr16g0521331 Helianthus annuus HOM05D007265 ORTHO05D009118 3.5e-18 94.4 62 75.8
Sp4g28590 Schrenkiella parvula HOM05D007265 ORTHO05D009118 3.5e-18 94.4 66 75.8
TWI59G0786 Tripterygium wilfordii HOM05D007265 ORTHO05D009118 3.5e-18 94.4 63 74.6
AL4G45970 Arabidopsis lyrata HOM05D007265 ORTHO05D009118 4.6e-18 94.0 66 74.2
BcaC02g12671 Brassica carinata HOM05D007265 ORTHO05D009118 4.6e-18 94.0 63 74.6
BcaC02g12679 Brassica carinata HOM05D007265 ORTHO05D009118 4.6e-18 94.0 63 74.6
C04p01380 Brassica napus HOM05D007265 ORTHO05D009118 4.6e-18 94.0 63 74.6
BolC4t21791H Brassica oleracea HOM05D007265 ORTHO05D009118 4.6e-18 94.0 63 74.6
BraA05t19124Z Brassica rapa HOM05D007265 ORTHO05D009118 4.6e-18 94.0 63 74.6
Carub.0004s2926 Capsella rubella HOM05D007265 ORTHO05D009118 4.6e-18 94.0 63 74.6
Gohir.A12G113200 Gossypium hirsutum HOM05D007265 ORTHO05D009118 4.6e-18 94.0 66 78.8
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 4.6e-18 94.0 63 76.2
Duzib133G0073 Durio zibethinus HOM05D007265 ORTHO05D009118 6.0e-18 93.6 63 76.2
CARHR141880 Cardamine hirsuta HOM05D007265 ORTHO05D009118 7.9e-18 93.2 66 75.8
DCAR_025264 Daucus carota HOM05D007265 ORTHO05D009118 7.9e-18 93.2 63 76.2
Potri.002G173101 Populus trichocarpa HOM05D007265 ORTHO05D009118 1.0e-17 92.8 65 75.4
THA.LOC104802081 Tarenaya hassleriana HOM05D007265 ORTHO05D009118 1.0e-17 92.8 63 69.8
THA.LOC104817372 Tarenaya hassleriana HOM05D007265 ORTHO05D009118 1.3e-17 92.4 63 69.8
PGSC0003DMG400000233 Solanum tuberosum HOM05D007265 ORTHO05D009118 1.8e-17 92.0 63 76.2
arahy.Tifrunner.gnm1.ann1.PH1UFL Arachis hypogaea HOM05D007265 ORTHO05D009118 2.3e-17 91.7 59 78.0
ClCG06G002640 Citrullus lanatus HOM05D007265 ORTHO05D009118 2.3e-17 91.7 56 78.6
Ciclev10023834m.g Citrus clementina HOM05D007265 ORTHO05D009118 3.9e-17 90.9 63 73.0
Migut.N01534 Erythranthe guttata HOM05D007265 ORTHO05D009118 3.9e-17 90.9 63 71.4
Lsat_1_v5_gn_4_39661 Lactuca sativa HOM05D007265 ORTHO05D009118 3.9e-17 90.9 58 74.1
vmacro13170 Vaccinium macrocarpon HOM05D007265 ORTHO05D009118 5.1e-17 90.5 58 79.3
COL.COLO4_06226 Corchorus olitorius HOM05D007265 ORTHO05D009118 6.7e-17 90.1 54 85.2
MBI07_g24775_MAGBIO Magnolia biondii HOM05D007265 ORTHO05D009118 6.7e-17 90.1 61 77.0
Os05g0542100 Oryza sativa ssp. japonica HOM05D007265 ORTHO05D009118 8.7e-17 89.7 63 73.0
MSTRG.17355 Avicennia marina HOM05D007265 ORTHO05D009118 1.1e-16 89.4 55 83.6
Sabra02G0140200 Salix brachista HOM05D007265 ORTHO05D009118 1.1e-16 89.4 65 70.8
CAN.G1415.20 Capsicum annuum HOM05D007265 ORTHO05D009118 1.5e-16 89.0 63 71.4
Lsat_1_v5_gn_3_126500 Lactuca sativa HOM05D007265 ORTHO05D009118 1.5e-16 89.0 57 77.2
Psat3g174080 Pisum sativum HOM05D007265 ORTHO05D009118 1.5e-16 89.0 56 78.6
SalBow5G3999 Salvia bowleyana HOM05D002476 ORTHO05D002652 1.5e-16 89.0 55 81.8
Solyc01g096090.4 Solanum lycopersicum HOM05D007265 ORTHO05D009118 1.5e-16 89.0 63 74.6
Sopen01g039810 Solanum pennellii HOM05D007265 ORTHO05D009118 1.5e-16 89.0 63 74.6
arahy.Tifrunner.gnm1.ann1.4N8QKH Arachis hypogaea HOM05D007265 ORTHO05D009118 2.5e-16 88.2 59 76.3
Glyma.03G258500 Glycine max HOM05D007265 ORTHO05D009118 2.5e-16 88.2 63 69.8
Glyma.19G257100 Glycine max HOM05D007265 ORTHO05D009118 2.5e-16 88.2 63 69.8
HanXRQChr03g0093001 Helianthus annuus HOM05D007265 ORTHO05D009118 3.3e-16 87.8 63 68.3
Phvul.006G114500 Phaseolus vulgaris HOM05D007265 ORTHO05D009118 3.3e-16 87.8 63 69.8
Aqoxy5G04249 Aquilegia oxysepala HOM05D007265 ORTHO05D009118 4.3e-16 87.4 59 72.9
Sc01g0002550 Simmondsia chinensis HOM05D007265 ORTHO05D009118 4.3e-16 87.4 57 71.9
Gorai.008G126400 Gossypium raimondii HOM05D007265 ORTHO05D009118 7.4e-16 86.7 55 80.0
BcaC02g07039 Brassica carinata HOM05D007265 ORTHO05D009118 1.3e-15 85.9 66 71.2
A05p01230 Brassica napus HOM05D007265 ORTHO05D009118 1.3e-15 85.9 55 78.2
HanXRQChr13g0423241 Helianthus annuus HOM05D007265 ORTHO05D009118 1.6e-15 85.5 63 66.7
A04p34450 Brassica napus HOM05D007265 ORTHO05D009118 3.7e-15 84.3 59 72.9
Lj1g0009143 Lotus japonicus HOM05D007265 ORTHO05D009118 3.7e-15 84.3 63 66.7
Nn3g18955 Nelumbo nucifera HOM05D007265 ORTHO05D009118 3.7e-15 84.3 47 93.6
CANSAT56G3703 Cannabis sativa HOM05D007265 ORTHO05D009118 6.3e-15 83.6 63 66.7
Ca_09518_v3 Cicer arietinum L. HOM05D007265 ORTHO05D009118 6.3e-15 83.6 63 63.5
Psat3g001880 Pisum sativum HOM05D007265 ORTHO05D009118 8.2e-15 83.2 52 78.8
Hund16719 Selenicereus undatus HOM05D007265 ORTHO05D009118 8.2e-15 83.2 83 55.4
BraA04t18903Z Brassica rapa HOM05D007265 ORTHO05D009118 1.4e-14 82.4 59 71.2
Aa31LG1G27910 Aethionema arabicum HOM05D007265 ORTHO05D009118 1.8e-14 82.0 54 72.2
Medtr7g117700 Medicago truncatula HOM05D007265 ORTHO05D009118 1.8e-14 82.0 63 63.5
Rhsim01G0174400 Rhododendron simsii HOM05D007265 ORTHO05D009118 5.3e-14 80.5 50 78.0
Hund27188 Selenicereus undatus HOM05D007265 ORTHO05D009118 6.9e-14 80.1 57 68.4
BolC4t28709H Brassica oleracea HOM05D007265 ORTHO05D009118 1.5e-13 79.0 59 67.8
Lalb_Chr18g0044541 Lupinus albus HOM05D007265 ORTHO05D009118 1.5e-13 79.0 63 65.1
BcaC02g07016 Brassica carinata HOM05D007265 ORTHO05D009118 3.4e-13 77.8 58 72.4
Gorai.007G109700 Gossypium raimondii HOM05D007265 ORTHO05D009118 5.9e-13 77.0 45 88.9
EL10Ac1g00247 Beta vulgaris HOM05D007265 ORTHO05D009118 1.0e-12 76.3 55 63.6
Lalb_Chr15g0076341 Lupinus albus HOM05D007265 ORTHO05D009118 2.2e-12 75.1 63 61.9
Os01g0705500 Oryza sativa ssp. japonica HOM05D007265 ORTHO05D009118 2.9e-12 74.7 45 84.4
BcaNung06658 Brassica carinata HOM05D007265 ORTHO05D009118 1.1e-11 72.8 48 75.0
Thhalv10001742m.g Eutrema salsugineum HOM05D007265 ORTHO05D009118 2.5e-11 71.6 114 43.9
AUR62004508 Chenopodium quinoa HOM05D007265 ORTHO05D009118 7.2e-11 70.1 54 61.1
Ah.05g179400 Amaranthus hybridus HOM05D007265 ORTHO05D009118 1.2e-10 69.3 57 59.6
Nitab4.5_0010712g0030 Nicotiana tabacum HOM05D007265 ORTHO05D009118 2.2e-07 58.5 37 75.7
TAR375G0162 Trochodendron aralioides HOM05D007265 ORTHO05D009118 3.7e-07 57.8 45 77.8
RcHm_v2.0_Chr1g0360081 Rosa chinensis HOM05D000497 ORTHO05D013080 6.3e-07 57.0 37 73.0
AUR62016412 Chenopodium quinoa HOM05D007265 ORTHO05D009118 3.1e-06 54.7 61 47.5


User provided reference genes

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