Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G020900 Manihot esculenta HOM05D000026 ORTHO05D008596 2.9e-116 421.8 198 100.0
Potri.014G100700 Populus trichocarpa HOM05D000026 ORTHO05D008596 6.6e-92 340.9 198 79.8
Potri.002G173800 Populus trichocarpa HOM05D000026 ORTHO05D008596 1.4e-89 333.2 200 77.5
GSVIVG01027181001 Vitis vinifera HOM05D000026 ORTHO05D008596 3.8e-87 325.1 198 75.3
RcHm_v2.0_Chr1g0360221 Rosa chinensis HOM05D000026 ORTHO05D008596 1.0e-84 317.0 201 74.6
Cfa003780 Carpinus fangiana HOM05D000026 ORTHO05D008596 1.3e-84 316.6 199 75.4
FAN10G3002 Fragaria x ananassa HOM05D000026 ORTHO05D008596 3.9e-84 315.1 201 73.1
Thecc.01G339500 Theobroma cacao HOM05D000026 ORTHO05D008596 5.1e-84 314.7 199 72.4
CSS0047897 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D008596 1.5e-83 313.2 199 71.9
FvH4_7g16970 Fragaria vesca HOM05D000026 ORTHO05D008596 1.5e-83 313.2 201 73.1
FAN06G4713 Fragaria x ananassa HOM05D000026 ORTHO05D008596 1.5e-83 313.2 201 73.1
CANSAT56G3067 Cannabis sativa HOM05D000026 ORTHO05D008596 1.9e-83 312.8 199 73.4
QL08p045855 Quercus lobata HOM05D000026 ORTHO05D008596 3.3e-83 312.0 199 73.9
TWI23G0686 Tripterygium wilfordii HOM05D000026 ORTHO05D008596 3.3e-83 312.0 196 75.0
Cc02_g39620 Coffea canephora HOM05D000026 ORTHO05D008596 4.3e-83 311.6 195 73.3
FAN06G2200 Fragaria x ananassa HOM05D000026 ORTHO05D008596 5.6e-83 311.2 199 73.4
Hma1.2p1_0101F.1_g049143 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 2.1e-82 309.3 191 73.3
Hma1.2p1_2584F.1_g324880 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 2.1e-82 309.3 191 73.3
Cpa.g.sc96.56 Carica papaya HOM05D000026 ORTHO05D008596 6.2e-82 307.8 191 72.3
Atru.chr5.703 Acer truncatum HOM05D000026 ORTHO05D008596 1.1e-81 307.0 199 72.9
MBI04_g28825_MAGBIO Magnolia biondii HOM05D000026 ORTHO05D008596 1.1e-81 307.0 196 69.4
Lj7A496T103 Lonicera japonica HOM05D000026 ORTHO05D008596 2.4e-81 305.8 195 72.3
Lsat_1_v5_gn_4_30860 Lactuca sativa HOM05D000026 ORTHO05D008596 4.0e-81 305.1 200 71.5
vmacro12664 Vaccinium macrocarpon HOM05D000026 ORTHO05D008596 5.3e-81 304.7 196 71.9
EL10Ac1g00239 Beta vulgaris HOM05D000026 ORTHO05D008596 9.0e-81 303.9 198 69.7
Gohir.A07G136500 Gossypium hirsutum HOM05D000026 ORTHO05D008596 1.2e-80 303.5 200 72.0
TWI59G0194 Tripterygium wilfordii HOM05D000026 ORTHO05D008596 1.5e-80 303.1 194 72.7
Hund27184 Selenicereus undatus HOM05D000026 ORTHO05D008596 2.0e-80 302.8 196 70.4
PGR031G0964 Punica granatum HOM05D000026 ORTHO05D008596 2.6e-80 302.4 201 69.7
Prupe.2G192000 Prunus persica HOM05D000026 ORTHO05D008596 3.4e-80 302.0 201 70.1
Gohir.D07G141900 Gossypium hirsutum HOM05D000026 ORTHO05D008596 7.6e-80 300.8 200 71.5
Gorai.001G153500 Gossypium raimondii HOM05D000026 ORTHO05D008596 7.6e-80 300.8 200 71.5
FAN01G2684 Fragaria x ananassa HOM05D000026 ORTHO05D008596 2.9e-79 298.9 219 66.7
DCAR_006978 Daucus carota HOM05D000026 ORTHO05D008596 6.4e-79 297.7 200 68.5
Nitab4.5_0000258g0260 Nicotiana tabacum HOM05D000026 ORTHO05D008596 8.4e-79 297.4 195 68.7
TAR629G1880 Trochodendron aralioides HOM05D000026 ORTHO05D008596 4.2e-78 295.0 195 68.2
Ciclev10022329m.g Citrus clementina HOM05D000026 ORTHO05D008596 5.4e-78 294.7 199 67.8
arahy.Tifrunner.gnm1.ann1.HRQ3AE Arachis hypogaea HOM05D000026 ORTHO05D008596 7.1e-78 294.3 195 70.3
MD01G1084300 Malus domestica HOM05D000026 ORTHO05D008596 9.3e-78 293.9 201 67.7
A04p34480 Brassica napus HOM05D000026 ORTHO05D008596 4.6e-77 291.6 199 65.8
BraA04t18906Z Brassica rapa HOM05D000026 ORTHO05D008596 4.6e-77 291.6 199 65.8
Phvul.010G115400 Phaseolus vulgaris HOM05D000026 ORTHO05D008596 6.0e-77 291.2 192 69.3
HanXRQChr16g0524761 Helianthus annuus HOM05D000026 ORTHO05D008596 7.9e-77 290.8 197 69.5
arahy.Tifrunner.gnm1.ann1.CN1679 Arachis hypogaea HOM05D000026 ORTHO05D008596 1.7e-76 289.7 195 69.7
MSTRG.28272 Avicennia marina HOM05D000026 ORTHO05D008596 1.7e-76 289.7 196 66.3
Lj3g0003520 Lotus japonicus HOM05D000026 ORTHO05D008596 2.3e-76 289.3 195 69.2
AL4G46010 Arabidopsis lyrata HOM05D000026 ORTHO05D008596 3.0e-76 288.9 199 65.8
VMungo0331G1134 Vigna mungo HOM05D000026 ORTHO05D008596 3.0e-76 288.9 192 70.8
Medtr8g027365 Medicago truncatula HOM05D000026 ORTHO05D008596 8.7e-76 287.3 192 70.8
BcaC02g07019 Brassica carinata HOM05D000026 ORTHO05D008596 1.1e-75 287.0 199 65.3
Glyma.16G023100 Glycine max HOM05D000026 ORTHO05D008596 1.1e-75 287.0 192 71.4
Thhalv10001639m.g Eutrema salsugineum HOM05D000026 ORTHO05D008596 1.5e-75 286.6 199 66.3
Lalb_Chr10g0100681 Lupinus albus HOM05D000026 ORTHO05D008596 4.3e-75 285.0 195 67.7
Aqoxy5G04296 Aquilegia oxysepala HOM05D000026 ORTHO05D008596 5.6e-75 284.6 194 67.5
C04p72250 Brassica napus HOM05D000026 ORTHO05D008596 5.6e-75 284.6 199 64.8
AT2G46580 Arabidopsis thaliana HOM05D000026 ORTHO05D008596 9.6e-75 283.9 199 64.8
Carub.0004s2930 Capsella rubella HOM05D000026 ORTHO05D008596 9.6e-75 283.9 199 64.3
Ca_23515_v3 Cicer arietinum L. HOM05D000026 ORTHO05D008596 9.6e-75 283.9 190 70.5
TPR.G20231 Trifolium pratense HOM05D000026 ORTHO05D008596 2.1e-74 282.7 190 69.5
COL.COLO4_06235 Corchorus olitorius HOM05D000026 ORTHO05D008596 2.8e-74 282.3 166 77.1
Sopen05g028950 Solanum pennellii HOM05D000026 ORTHO05D008596 3.6e-74 282.0 185 69.7
THA.LOC104827623 Tarenaya hassleriana HOM05D000026 ORTHO05D008596 3.6e-74 282.0 200 64.5
Sp4g28630 Schrenkiella parvula HOM05D000026 ORTHO05D008596 6.2e-74 281.2 195 64.6
BcaC02g07042 Brassica carinata HOM05D000026 ORTHO05D008596 1.4e-73 280.0 197 64.5
Solyc05g050530.3 Solanum lycopersicum HOM05D000026 ORTHO05D008596 1.4e-73 280.0 183 69.9
Os03g0115500 Oryza sativa ssp. japonica HOM05D000026 ORTHO05D008596 3.1e-73 278.9 195 63.6
SGA_v2.0_scaffold232G43545 Striga asiatica HOM05D000026 ORTHO05D008596 3.1e-73 278.9 196 65.3
CARHR141930 Cardamine hirsuta HOM05D000026 ORTHO05D008596 1.5e-72 276.6 199 63.3
PSO063G7217 Papaver somniferum HOM05D000026 ORTHO05D008596 2.6e-72 275.8 193 63.7
CAN.G360.5 Capsicum annuum HOM05D000026 ORTHO05D008596 4.5e-72 275.0 182 68.7
Eucgr.D02387 Eucalyptus grandis HOM05D000026 ORTHO05D008596 4.5e-72 275.0 195 67.7
FAN10G2309 Fragaria x ananassa HOM05D000026 ORTHO05D000127 9.9e-72 273.9 169 74.6
Duzib133G0719 Durio zibethinus HOM05D000026 ORTHO05D008596 1.3e-71 273.5 166 76.5
SEGI_21315 Sequoiadendron giganteum HOM05D000026 ORTHO05D008596 1.3e-71 273.5 198 60.6
ECA234G0680 Erigeron canadensis HOM05D000026 ORTHO05D008596 3.8e-71 271.9 201 64.2
Zm00001eb001050 Zea mays HOM05D000026 ORTHO05D008596 4.9e-71 271.6 195 61.5
Migut.N01531 Erythranthe guttata HOM05D000026 ORTHO05D008596 3.2e-70 268.9 196 65.3
Sed0016971 Sechium edule HOM05D000026 ORTHO05D008596 2.7e-69 265.8 198 60.1
MELO3C006011.2 Cucumis melo HOM05D000026 ORTHO05D008596 3.0e-68 262.3 193 62.2
unitig_21.g20560 Utricularia gibba HOM05D000026 ORTHO05D008596 3.0e-68 262.3 206 62.1
CsaV3_3G007930 Cucumis sativus L. HOM05D000026 ORTHO05D008596 5.1e-68 261.5 191 62.3
Dinv32607 Davidia involucrata HOM05D000026 ORTHO05D008596 1.9e-67 259.6 156 74.4
Nitab4.5_0003865g0100 Nicotiana tabacum HOM05D000026 ORTHO05D008596 7.4e-67 257.7 195 62.6
CDE02G1978 Ceratophyllum demersum HOM05D000026 ORTHO05D008596 3.7e-66 255.4 198 59.1
PGSC0003DMG400007008 Solanum tuberosum HOM05D000026 ORTHO05D008596 3.7e-66 255.4 165 70.3
Aa31LG1G27980 Aethionema arabicum HOM05D000026 ORTHO05D008596 8.1e-66 254.2 166 69.3
CiPaw.01G078200 Carya illinoinensis HOM05D000026 ORTHO05D008596 8.1e-66 254.2 167 71.3
AUR62004514 Chenopodium quinoa HOM05D000026 ORTHO05D008596 1.1e-65 253.8 169 66.9
Actinidia28110 Actinidia chinensis HOM05D000026 ORTHO05D008596 1.4e-62 243.4 166 70.5
BcaNung06661 Brassica carinata HOM05D000026 ORTHO05D008596 3.5e-61 238.8 200 57.0
BolC4t28712H Brassica oleracea HOM05D000026 ORTHO05D008596 1.3e-60 236.9 221 53.4
FAN03G0355 Fragaria x ananassa HOM05D000026 ORTHO05D008596 6.7e-60 234.6 165 67.9
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 2.1e-58 229.6 199 52.8
PSO170G4931 Papaver somniferum HOM05D000026 ORTHO05D008596 6.9e-57 224.6 193 56.0
Mapoly0085s0082 Marchantia polymorpha HOM05D000026 ORTHO05D008596 2.2e-55 219.5 200 49.5
Hma1.2p1_0101F.1_g049146 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 7.2e-54 214.5 133 69.9
Hma1.2p1_2584F.1_g324890 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 7.2e-54 214.5 133 69.9
Pp3c7_90 Physcomitrium patens HOM05D000026 ORTHO05D008596 1.2e-53 213.8 195 48.2
Sabra14G0074100 Salix brachista HOM05D000026 ORTHO05D008596 7.9e-53 211.1 173 59.5
Rhsim01G0174600 Rhododendron simsii HOM05D000026 ORTHO05D008596 1.5e-51 206.8 133 67.7
SMO119G0236 Selaginella moellendorffii HOM05D000026 ORTHO05D008596 1.5e-51 206.8 193 51.3
Nn1g00327 Nelumbo nucifera HOM05D000026 ORTHO05D008596 1.5e-48 196.8 195 52.3
Oeu004961.1 Olea europaea HOM05D000026 ORTHO05D008596 2.0e-48 196.4 132 63.6
Peaxi162Scf00716g00425 Petunia axillaris HOM05D000026 ORTHO05D008596 1.0e-47 194.1 195 49.2
Sc01g0002470 Simmondsia chinensis HOM05D000026 ORTHO05D008596 4.3e-43 178.7 105 74.3
Hma1.2p1_0101F.1_g049160 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 2.1e-37 159.8 92 76.1
CBR_g3312 Chara braunii HOM05D000026 ORTHO05D008596 2.7e-37 159.5 218 39.0
ClCG05G000710 Citrullus lanatus HOM05D000026 ORTHO05D008596 9.7e-35 151.0 265 37.0
Actinidia28403 Actinidia chinensis HOM05D000026 ORTHO05D008596 5.0e-31 138.7 79 77.2
HPP92_015098 Vanilla planifolia HOM05D000026 ORTHO05D008596 9.4e-30 134.4 111 58.6
AUR62022739 Chenopodium quinoa HOM05D000026 ORTHO05D008596 3.0e-28 129.4 89 64.0
Sabra02G0139600 Salix brachista HOM05D000026 ORTHO05D008596 1.2e-24 117.5 68 75.0
ATR0757G161 Amborella trichopoda HOM05D000026 ORTHO05D008596 4.5e-24 115.5 73 72.6
MCO05G651 Micromonas commoda HOM05D000026 ORTHO05D008596 1.1e-22 110.9 183 31.7
PRCOL_00000497 Prasinoderma coloniale HOM05D000026 ORTHO05D008596 7.0e-17 91.7 230 31.3
Cre02.g095100 Chlamydomonas reinhardtii HOM05D000026 ORTHO05D008596 1.7e-15 87.0 117 35.9
Hund19453 Selenicereus undatus HOM05D004066 ORTHO05D008596 8.0e-13 78.2 53 66.0
Zm00001eb244850 Zea mays HOM05D017471 ORTHO05D012887 8.0e-13 78.2 56 57.1
Haze_15680 Corylus avellana HOM05D000026 ORTHO05D008596 1.0e-12 77.8 47 80.9
TAR636G3419 Trochodendron aralioides HOM05D000026 ORTHO05D008596 1.8e-12 77.0 63 57.1
Zm00001eb123990 Zea mays HOM05D000026 ORTHO05D012887 3.4e-11 72.8 55 54.5


User provided reference genes

Program Settings