Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G019000 Manihot esculenta HOM05D007199 ORTHO05D007257 7.7e-145 517.3 295 100.0
Manes.01G254801 Manihot esculenta HOM05D007199 ORTHO05D007257 1.1e-98 364.0 303 74.3
Potri.014G102600 Populus trichocarpa HOM05D007199 ORTHO05D007257 3.0e-80 302.8 289 66.4
Potri.002G175300 Populus trichocarpa HOM05D007199 ORTHO05D007257 8.4e-67 258.1 263 64.3
QL08p046296 Quercus lobata HOM05D007199 ORTHO05D007257 2.1e-65 253.4 303 54.1
Haze_15700 Corylus avellana HOM05D007199 ORTHO05D007257 3.9e-64 249.2 302 49.7
Thecc.01G336800 Theobroma cacao HOM05D007199 ORTHO05D007257 1.9e-63 246.9 294 56.1
CiPaw.02G043300 Carya illinoinensis HOM05D007199 ORTHO05D007257 1.8e-61 240.4 291 49.1
Duzib138G1694 Durio zibethinus HOM05D007199 ORTHO05D007257 1.2e-60 237.7 295 56.9
TWI14G0585 Tripterygium wilfordii HOM05D007199 ORTHO05D007257 4.5e-60 235.7 304 50.3
Atru.chr5.734 Acer truncatum HOM05D007199 ORTHO05D007257 6.4e-59 231.9 296 55.7
Ciclev10024292m.g Citrus clementina HOM05D007199 ORTHO05D007257 7.1e-58 228.4 294 47.3
Dinv32625 Davidia involucrata HOM05D007199 ORTHO05D007257 2.1e-57 226.9 292 49.7
Duzib133G0933 Durio zibethinus HOM05D007199 ORTHO05D007257 1.8e-56 223.8 322 49.1
GSVIVG01027402001 Vitis vinifera HOM05D007199 ORTHO05D007257 6.7e-56 221.9 305 53.1
Gorai.007G111200 Gossypium raimondii HOM05D007199 ORTHO05D007257 1.3e-54 217.6 297 49.5
TWI23G0381 Tripterygium wilfordii HOM05D007199 ORTHO05D007257 1.3e-54 217.6 294 49.3
Gohir.A11G099400 Gossypium hirsutum HOM05D007199 ORTHO05D007257 1.6e-54 217.2 296 50.3
Prupe.2G194000 Prunus persica HOM05D007199 ORTHO05D007257 4.8e-54 215.7 302 48.0
Gohir.D11G103900 Gossypium hirsutum HOM05D007199 ORTHO05D007257 1.1e-53 214.5 294 50.0
CiPaw.01G079500 Carya illinoinensis HOM05D007199 ORTHO05D007257 1.8e-53 213.8 303 50.5
Lj3g0002992 Lotus japonicus HOM05D007199 ORTHO05D007257 1.5e-52 210.7 315 42.9
Dinv34240 Davidia involucrata HOM05D007199 ORTHO05D007257 1.0e-51 208.0 306 49.7
Phvul.010G116850 Phaseolus vulgaris HOM05D007199 ORTHO05D007257 2.2e-51 206.8 268 44.4
Phvul.010G116900 Phaseolus vulgaris HOM05D007199 ORTHO05D007257 2.2e-51 206.8 268 44.4
VMungo0331G0932 Vigna mungo HOM05D007199 ORTHO05D007257 8.4e-51 204.9 269 44.6
Glyma.07G052500 Glycine max HOM05D007199 ORTHO05D007257 9.3e-50 201.4 271 43.9
RcHm_v2.0_Chr1g0360641 Rosa chinensis HOM05D007199 ORTHO05D007257 9.3e-50 201.4 303 47.2
Glyma.16G021400 Glycine max HOM05D007199 ORTHO05D007257 2.7e-49 199.9 278 44.6
TAR629G0242 Trochodendron aralioides HOM05D007199 ORTHO05D007257 1.6e-46 190.7 308 44.8
MD07G1155200 Malus domestica HOM05D007199 ORTHO05D007257 4.8e-46 189.1 315 45.4
FvH4_7g17280 Fragaria vesca HOM05D007199 ORTHO05D007257 5.3e-45 185.7 298 43.3
FAN10G2445 Fragaria x ananassa HOM05D007199 ORTHO05D007257 6.9e-45 185.3 304 43.4
FAN10G3440 Fragaria x ananassa HOM05D007199 ORTHO05D007257 6.9e-45 185.3 304 43.4
MD00G1035800 Malus domestica HOM05D007199 ORTHO05D007257 1.2e-44 184.5 312 42.3
FAN06G3172 Fragaria x ananassa HOM05D007199 ORTHO05D007257 1.5e-44 184.1 298 43.0
Lalb_Chr15g0076391 Lupinus albus HOM05D007199 ORTHO05D007257 1.5e-44 184.1 287 38.7
Cpa.g.sc144.10 Carica papaya HOM05D007199 ORTHO05D007257 2.0e-44 183.7 272 48.5
Sabra14G0075600 Salix brachista HOM05D007199 ORTHO05D007257 5.9e-44 182.2 287 43.9
FAN03G0194 Fragaria x ananassa HOM05D007199 ORTHO05D007257 1.7e-43 180.6 305 43.0
Nn1g00376 Nelumbo nucifera HOM05D007199 ORTHO05D007257 2.2e-43 180.3 312 41.3
Gohir.A08G124000 Gossypium hirsutum HOM05D007199 ORTHO05D007257 2.9e-43 179.9 262 46.9
FAN01G2057 Fragaria x ananassa HOM05D007199 ORTHO05D007257 8.5e-43 178.3 304 42.4
Medtr8g027100 Medicago truncatula HOM05D007199 ORTHO05D007257 8.5e-43 178.3 274 42.3
Lalb_Chr10g0100741 Lupinus albus HOM05D007199 ORTHO05D007257 1.1e-42 177.9 295 37.3
TPR.G15900 Trifolium pratense HOM05D007199 ORTHO05D007257 3.2e-42 176.4 265 43.4
Gorai.004G150000 Gossypium raimondii HOM05D007199 ORTHO05D007257 4.2e-42 176.0 262 46.2
Eucgr.E00024 Eucalyptus grandis HOM05D007199 ORTHO05D007257 5.5e-42 175.6 304 41.1
Gohir.D08G145100 Gossypium hirsutum HOM05D007199 ORTHO05D007257 7.2e-42 175.3 262 45.8
MELO3C022248.2 Cucumis melo HOM05D007199 ORTHO05D007257 6.1e-41 172.2 297 45.8
Sed0010537 Sechium edule HOM05D007199 ORTHO05D007257 1.0e-40 171.4 298 44.0
Psat4g216200 Pisum sativum HOM05D007199 ORTHO05D007257 8.8e-40 168.3 283 42.0
CsaV3_6G008960 Cucumis sativus L. HOM05D007199 ORTHO05D007257 9.7e-39 164.9 298 46.0
Hma1.2p1_0309F.1_g120450 Hydrangea macrophylla HOM05D007199 ORTHO05D007257 5.3e-37 159.1 313 47.3
TAR375G0146 Trochodendron aralioides HOM05D007199 ORTHO05D007257 6.9e-37 158.7 306 41.2
ClCG06G002790 Citrullus lanatus HOM05D007199 ORTHO05D007257 1.9e-34 150.6 282 44.7
Ca_23498_v3 Cicer arietinum L. HOM05D007199 ORTHO05D007257 2.5e-34 150.2 278 38.5
CSS0043385 Camellia sinensis var. sinensis HOM05D007199 ORTHO05D007257 6.1e-33 145.6 291 45.4
Actinidia28100 Actinidia chinensis HOM05D007199 ORTHO05D007257 8.8e-32 141.7 286 35.3
CSS0044672 Camellia sinensis var. sinensis HOM05D007199 ORTHO05D007257 8.8e-32 141.7 244 49.2
Nitab4.5_0002638g0020 Nicotiana tabacum HOM05D007199 ORTHO05D007257 1.1e-31 141.4 297 39.1
THA.LOC104802086 Tarenaya hassleriana HOM05D007199 ORTHO05D007257 3.3e-31 139.8 294 40.8
Rhsim01G0176600 Rhododendron simsii HOM05D007199 ORTHO05D007257 6.3e-30 135.6 293 36.9
Sopen10g005110 Solanum pennellii HOM05D007199 ORTHO05D007257 1.1e-29 134.8 301 38.5
PGSC0003DMG400005529 Solanum tuberosum HOM05D007199 ORTHO05D007257 4.1e-29 132.9 301 39.2
Gohir.A12G114200 Gossypium hirsutum HOM05D007199 ORTHO05D007257 5.3e-29 132.5 253 39.5
Solyc10g009320.3 Solanum lycopersicum HOM05D007199 ORTHO05D007257 5.3e-29 132.5 300 38.3
CANSAT56G1498 Cannabis sativa HOM05D007199 ORTHO05D007257 9.1e-29 131.7 268 41.0
arahy.Tifrunner.gnm1.ann1.A7IBVM Arachis hypogaea HOM05D007199 ORTHO05D007257 1.5e-28 131.0 304 32.9
MSTRG.17369 Avicennia marina HOM05D007199 ORTHO05D007257 2.6e-28 130.2 289 39.8
COL.COLO4_06259 Corchorus olitorius HOM05D007199 ORTHO05D007257 1.5e-26 124.4 115 62.6
arahy.Tifrunner.gnm1.ann1.P1IKWH Arachis hypogaea HOM05D007199 ORTHO05D007257 2.5e-26 123.6 294 41.8
THA.LOC104817388 Tarenaya hassleriana HOM05D007199 ORTHO05D007257 2.5e-26 123.6 309 36.2
Lj9C602T4 Lonicera japonica HOM05D007199 ORTHO05D007257 2.7e-25 120.2 241 38.2
Nitab4.5_0014168g0010 Nicotiana tabacum HOM05D007199 ORTHO05D007257 4.7e-25 119.4 271 38.0
arahy.Tifrunner.gnm1.ann1.WJU08E Arachis hypogaea HOM05D007199 ORTHO05D007257 1.4e-24 117.9 231 43.7
Peaxi162Scf00087g00199 Petunia axillaris HOM05D007199 ORTHO05D007257 1.4e-24 117.9 294 35.0
arahy.Tifrunner.gnm1.ann1.GEK5Z0 Arachis hypogaea HOM05D007199 ORTHO05D007257 3.0e-24 116.7 229 43.2
PSO782G1188 Papaver somniferum HOM05D007199 ORTHO05D007257 3.9e-24 116.3 307 32.2
HanXRQChr04g0120361 Helianthus annuus HOM05D007199 ORTHO05D007257 5.2e-24 115.9 273 37.7
Oeu022158.1 Olea europaea HOM05D007199 ORTHO05D007257 1.1e-23 114.8 237 40.1
Aa31LG1G28040 Aethionema arabicum HOM05D007199 ORTHO05D007257 1.2e-20 104.8 283 32.2
A05p01150 Brassica napus HOM05D012720 ORTHO05D007257 2.0e-20 104.0 325 31.7
Sopen01g040020 Solanum pennellii HOM05D007199 ORTHO05D007257 2.6e-20 103.6 279 35.5
Actinidia25657 Actinidia chinensis HOM05D007199 ORTHO05D007257 3.5e-20 103.2 99 55.6
AUR62008640 Chenopodium quinoa HOM05D021513 ORTHO05D007257 5.9e-20 102.4 264 34.5
Thhalv10001576m.g Eutrema salsugineum HOM05D012720 ORTHO05D007257 7.7e-20 102.1 273 34.4
Solyc01g096260.4 Solanum lycopersicum HOM05D007199 ORTHO05D007257 1.0e-19 101.7 305 32.8
BolC4t21784H Brassica oleracea HOM05D012720 ORTHO05D007257 1.7e-19 100.9 325 32.0
BraA05t19115Z Brassica rapa HOM05D012720 ORTHO05D007257 1.7e-19 100.9 324 31.2
CARHR141980 Cardamine hirsuta HOM05D012720 ORTHO05D007257 1.5e-18 97.8 283 31.4
BcaB01g03200 Brassica carinata HOM05D012720 ORTHO05D007257 7.2e-18 95.5 298 31.5
BcaC02g12658 Brassica carinata HOM05D012720 ORTHO05D007257 7.2e-18 95.5 310 30.0
PGSC0003DMG400000126 Solanum tuberosum HOM05D007199 ORTHO05D007257 9.4e-18 95.1 296 33.4
PGR042G0368 Punica granatum HOM05D007199 ORTHO05D007257 2.7e-17 93.6 323 37.8
DCAR_002988 Daucus carota HOM05D007199 ORTHO05D007257 3.6e-17 93.2 244 35.2
Nitab4.5_0000917g0050 Nicotiana tabacum HOM05D007199 ORTHO05D007257 8.0e-17 92.0 194 36.6
vmacro12588 Vaccinium macrocarpon HOM05D007199 ORTHO05D007257 8.0e-17 92.0 166 40.4
Aqoxy5G04262 Aquilegia oxysepala HOM05D007199 ORTHO05D007257 1.0e-16 91.7 271 32.5
ECA236G3069 Erigeron canadensis HOM05D007199 ORTHO05D007257 1.0e-16 91.7 292 30.8
ATR0620G133 Amborella trichopoda HOM05D007199 ORTHO05D007257 1.8e-16 90.9 297 31.0
AL4G46070 Arabidopsis lyrata HOM05D012720 ORTHO05D007257 1.8e-16 90.9 282 30.1
DCAR_006984 Daucus carota HOM05D007199 ORTHO05D007257 1.2e-15 88.2 299 31.1
MBI12_g13712_MAGBIO Magnolia biondii HOM05D007199 ORTHO05D007257 1.5e-15 87.8 280 31.8
CDE09G0027 Ceratophyllum demersum HOM05D007199 ORTHO05D007257 4.4e-15 86.3 299 31.4
CDE11G0583 Ceratophyllum demersum HOM05D007199 ORTHO05D007257 4.4e-15 86.3 296 32.1
EL10Ac7g17504 Beta vulgaris HOM05D021513 ORTHO05D007257 5.7e-15 85.9 232 37.5
AT2G46640 Arabidopsis thaliana HOM05D012720 ORTHO05D007257 7.5e-15 85.5 284 30.3
AUR62033124 Chenopodium quinoa HOM05D021513 ORTHO05D007257 7.5e-15 85.5 225 32.0
Lsat_1_v5_gn_4_32721 Lactuca sativa HOM05D007199 ORTHO05D007257 7.5e-15 85.5 269 30.5
C04p01310 Brassica napus HOM05D012720 ORTHO05D007257 1.7e-14 84.3 314 31.2
SalBow5G5634 Salvia bowleyana HOM05D007199 ORTHO05D007257 1.7e-14 84.3 261 31.0
Gorai.008G127500 Gossypium raimondii HOM05D007199 ORTHO05D007257 3.7e-14 83.2 81 54.3
Sp4g28690 Schrenkiella parvula HOM05D012720 ORTHO05D007257 1.4e-13 81.3 295 28.8
EL10Ac1g00217 Beta vulgaris HOM05D021513 ORTHO05D007257 3.1e-13 80.1 323 32.2
Cc02_g39760 Coffea canephora HOM05D007199 ORTHO05D007257 4.1e-13 79.7 358 34.1
BcaC02g07047 Brassica carinata HOM05D012720 ORTHO05D007257 7.0e-13 79.0 274 31.8
Ah.15g093270 Amaranthus hybridus HOM05D021513 ORTHO05D007257 2.0e-12 77.4 239 33.5
Carub.0004s2935 Capsella rubella HOM05D012720 ORTHO05D007257 3.5e-12 76.6 268 32.5
Peaxi162Scf00767g00113 Petunia axillaris HOM05D007199 ORTHO05D007257 1.1e-10 71.6 222 31.5
Sc23g0001940 Simmondsia chinensis HOM05D007199 ORTHO05D007257 1.5e-10 71.2 145 33.8
CDE02G0206 Ceratophyllum demersum HOM05D056078 ORTHO05D007257 3.2e-10 70.1 293 25.6
Hund16734 Selenicereus undatus HOM05D007199 ORTHO05D007257 2.7e-09 67.0 264 30.3
Nitab4.5_0000307g0150 Nicotiana tabacum HOM05D007199 ORTHO05D007257 3.6e-09 66.6 66 54.5
HanXRQChr16g0524641 Helianthus annuus HOM05D007199 ORTHO05D007257 4.7e-09 66.2 265 31.3
SGA_v2.0_scaffold581G53044 Striga asiatica HOM05D006631 ORTHO05D008359 5.7e-07 59.3 288 30.2
MBI04_g33415_MAGBIO Magnolia biondii HOM05D007199 ORTHO05D007257 6.3e-06 55.8 195 29.7


User provided reference genes

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