Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G017800 Manihot esculenta HOM05D007943 ORTHO05D010047 2.8e-79 298.5 146 100.0
Manes.01G241300 Manihot esculenta HOM05D007943 ORTHO05D010047 2.9e-28 129.0 95 65.3
Duzib133G1419 Durio zibethinus HOM05D007943 ORTHO05D010047 5.3e-22 108.2 103 57.3
GSVIVG01027420001 Vitis vinifera HOM05D007943 ORTHO05D010047 2.6e-21 105.9 130 46.9
Gohir.D07G139100 Gossypium hirsutum HOM05D007943 ORTHO05D010047 3.4e-21 105.5 102 57.8
Gorai.001G151200 Gossypium raimondii HOM05D007943 ORTHO05D010047 3.4e-21 105.5 102 57.8
Atru.chr5.749 Acer truncatum HOM05D007943 ORTHO05D010047 7.7e-21 104.4 96 51.0
Gohir.A07G134500 Gossypium hirsutum HOM05D007943 ORTHO05D010047 2.2e-20 102.8 102 55.9
Ciclev10022962m.g Citrus clementina HOM05D007943 ORTHO05D010047 2.9e-20 102.4 104 50.0
Haze_15717 Corylus avellana HOM05D007943 ORTHO05D010047 4.2e-19 98.6 87 56.3
QL08p046777 Quercus lobata HOM05D007943 ORTHO05D010047 4.2e-19 98.6 108 47.2
RcHm_v2.0_Chr1g0360861 Rosa chinensis HOM05D007943 ORTHO05D010047 2.7e-18 95.9 103 48.5
Thecc.01G335100 Theobroma cacao HOM05D007943 ORTHO05D010047 2.7e-18 95.9 91 52.7
Potri.014G104100 Populus trichocarpa HOM05D007943 ORTHO05D010047 6.1e-18 94.7 95 52.6
CSS0046577 Camellia sinensis var. sinensis HOM05D007943 ORTHO05D010047 8.0e-18 94.4 104 46.2
FAN03G2903 Fragaria x ananassa HOM05D007943 ORTHO05D010047 8.0e-18 94.4 98 48.0
CSS0001750 Camellia sinensis var. sinensis HOM05D007943 ORTHO05D010047 3.0e-17 92.4 104 49.0
FvH4_7g17420 Fragaria vesca HOM05D007943 ORTHO05D010047 6.7e-17 91.3 87 49.4
FAN06G1823 Fragaria x ananassa HOM05D007943 ORTHO05D010047 6.7e-17 91.3 87 49.4
Gorai.007G112000 Gossypium raimondii HOM05D007943 ORTHO05D010047 6.7e-17 91.3 87 52.9
Cfa003750 Carpinus fangiana HOM05D007943 ORTHO05D010047 8.8e-17 90.9 88 54.5
Potri.002G177700 Populus trichocarpa HOM05D007943 ORTHO05D010047 8.8e-17 90.9 98 51.0
Prupe.2G195800 Prunus persica HOM05D007943 ORTHO05D010047 8.8e-17 90.9 87 50.6
FAN10G1708 Fragaria x ananassa HOM05D007943 ORTHO05D010047 1.5e-16 90.1 87 48.3
FAN01G2944 Fragaria x ananassa HOM05D007943 ORTHO05D010047 2.6e-16 89.4 87 48.3
MD07G1157400 Malus domestica HOM05D007943 ORTHO05D010047 2.6e-16 89.4 97 44.3
FAN10G0207 Fragaria x ananassa HOM05D007943 ORTHO05D010047 5.7e-16 88.2 87 48.3
Gohir.A11G100000 Gossypium hirsutum HOM05D007943 ORTHO05D010047 5.7e-16 88.2 87 51.7
COL.COLO4_06217 Corchorus olitorius HOM05D007943 ORTHO05D010047 7.4e-16 87.8 114 48.2
Gohir.D11G104700 Gossypium hirsutum HOM05D007943 ORTHO05D010047 1.3e-15 87.0 87 50.6
MD01G1087200 Malus domestica HOM05D007943 ORTHO05D010047 1.3e-15 87.0 78 50.0
CiPaw.01G081100 Carya illinoinensis HOM05D007943 ORTHO05D010047 2.8e-15 85.9 103 45.6
Sabra02G0135900 Salix brachista HOM05D007943 ORTHO05D010047 3.1e-14 82.4 100 44.0
Oeu042966.1 Olea europaea HOM05D007943 ORTHO05D010047 7.0e-14 81.3 85 45.9
TAR629G3284 Trochodendron aralioides HOM05D007943 ORTHO05D010047 1.0e-12 77.4 85 44.7
Rhsim01G0178600 Rhododendron simsii HOM05D007943 ORTHO05D010047 3.8e-12 75.5 80 45.0
Carub.0001s0107 Capsella rubella HOM05D007943 ORTHO05D010047 1.1e-11 73.9 61 50.8
AL1G11360 Arabidopsis lyrata HOM05D007943 ORTHO05D010047 1.5e-11 73.6 58 55.2
BolC8t52866H Brassica oleracea HOM05D007943 ORTHO05D010047 1.5e-11 73.6 83 43.4
Lalb_Chr10g0100821 Lupinus albus HOM05D007943 ORTHO05D010047 3.2e-11 72.4 88 42.0
A09p68930 Brassica napus HOM05D007943 ORTHO05D010047 4.2e-11 72.0 73 47.9
Nn3g18838 Nelumbo nucifera HOM05D007943 ORTHO05D010047 7.2e-11 71.2 100 36.0
TPR.G25267 Trifolium pratense HOM05D007943 ORTHO05D010047 1.2e-10 70.5 82 46.3
Aqoxy7G00012 Aquilegia oxysepala HOM05D007943 ORTHO05D010047 1.6e-10 70.1 113 36.3
CsaV3_3G007690 Cucumis sativus L. HOM05D007943 ORTHO05D010047 1.6e-10 70.1 78 41.0
Glyma.16G020300 Glycine max HOM05D007943 ORTHO05D010047 2.1e-10 69.7 74 44.6
MELO3C005988.2 Cucumis melo HOM05D007943 ORTHO05D010047 4.7e-10 68.6 101 33.7
Glyma.07G051200 Glycine max HOM05D007943 ORTHO05D010047 6.1e-10 68.2 107 38.3
Medtr8g024630 Medicago truncatula HOM05D007943 ORTHO05D010047 8.0e-10 67.8 79 40.5
Lj3g0013373 Lotus japonicus HOM05D007943 ORTHO05D010047 1.0e-09 67.4 93 38.7
Phvul.006G116500 Phaseolus vulgaris HOM05D007943 ORTHO05D010047 1.0e-09 67.4 52 51.9
Sed0006019 Sechium edule HOM05D007943 ORTHO05D010047 1.0e-09 67.4 93 39.8
Hund16743 Selenicereus undatus HOM05D007943 ORTHO05D010047 1.4e-09 67.0 60 48.3
DCAR_006654 Daucus carota HOM05D007943 ORTHO05D010047 3.0e-09 65.9 55 54.5
TAR375G0647 Trochodendron aralioides HOM05D007943 ORTHO05D010047 6.7e-09 64.7 70 47.1
arahy.Tifrunner.gnm1.ann1.FJCJ23 Arachis hypogaea HOM05D007943 ORTHO05D010047 1.2e-08 63.9 90 35.6
Lalb_Chr02g0157681 Lupinus albus HOM05D007943 ORTHO05D010047 2.0e-08 63.2 90 44.4
TPR.G4732 Trifolium pratense HOM05D007943 ORTHO05D010047 2.0e-08 63.2 56 48.2
CsaV3_3G007710 Cucumis sativus L. HOM05D007943 ORTHO05D010047 2.6e-08 62.8 89 33.7
Phvul.010G118200 Phaseolus vulgaris HOM05D007943 ORTHO05D010047 3.3e-08 62.4 74 45.9
Psat4g217240 Pisum sativum HOM05D007943 ORTHO05D010047 4.4e-08 62.0 70 40.0
Glyma.03G260100 Glycine max HOM05D007943 ORTHO05D010047 5.7e-08 61.6 52 42.3
Solyc10g009260.1 Solanum lycopersicum HOM05D007943 ORTHO05D010047 5.7e-08 61.6 71 47.9
Sc23g0001870 Simmondsia chinensis HOM05D007943 ORTHO05D010047 1.3e-07 60.5 75 37.3
Glyma.19G259000 Glycine max HOM05D007943 ORTHO05D010047 1.7e-07 60.1 60 40.0
Sed0008180 Sechium edule HOM05D007943 ORTHO05D010047 3.7e-07 58.9 89 34.8
ClCG05G000500 Citrullus lanatus HOM05D007943 ORTHO05D010047 4.8e-07 58.5 65 40.0
AUR62004549 Chenopodium quinoa HOM05D007943 ORTHO05D010047 7.0e-06 54.7 63 39.7


User provided reference genes

Program Settings