Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 2.4e-200 701.8 324 100.0
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 6.0e-199 697.2 323 99.4
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 2.3e-198 695.3 323 99.1
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 3.0e-198 694.9 323 99.1
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 6.6e-198 693.7 323 99.1
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 1.9e-173 612.5 324 85.8
Manes.05G006214 Manihot esculenta HOM05D005172 ORTHO05D006324 5.3e-171 604.4 280 99.3
Manes.05G008035 Manihot esculenta HOM05D005172 ORTHO05D006324 1.2e-170 603.2 280 98.9
Manes.05G012891 Manihot esculenta HOM05D005172 ORTHO05D006324 9.9e-170 600.1 280 98.6
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 9.9e-162 573.5 325 80.0
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 3.8e-161 571.6 320 81.2
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 8.4e-161 570.5 326 78.8
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 2.3e-158 562.4 326 78.8
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 3.0e-158 562.0 326 77.3
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 1.6e-156 556.2 324 77.5
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 6.2e-156 554.3 319 76.2
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.4e-155 553.1 328 75.6
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 1.8e-155 552.7 325 75.4
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.2e-154 550.1 328 75.3
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 1.2e-154 550.1 321 76.0
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 1.5e-154 549.7 328 75.3
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 1.5e-154 549.7 326 76.4
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 1.5e-154 549.7 318 76.1
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 3.4e-154 548.5 325 76.6
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 1.3e-153 546.6 326 75.5
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 6.4e-153 544.3 319 75.5
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 6.4e-153 544.3 318 76.1
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 8.4e-153 543.9 326 75.8
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 8.4e-153 543.9 326 75.8
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 1.4e-152 543.1 317 77.0
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 1.4e-152 543.1 309 78.3
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 1.9e-152 542.7 326 76.1
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 4.2e-152 541.6 318 76.7
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 4.2e-152 541.6 326 76.4
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 7.1e-152 540.8 326 75.2
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 1.6e-151 539.7 319 75.9
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 3.9e-150 535.0 326 74.8
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 5.1e-150 534.6 322 73.3
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 1.3e-148 530.0 331 71.9
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 2.8e-148 528.9 319 73.7
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 1.1e-147 526.9 321 73.2
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 2.4e-147 525.8 323 72.4
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 4.0e-147 525.0 322 73.0
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 4.0e-147 525.0 318 73.0
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 6.9e-147 524.2 323 71.2
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 1.2e-146 523.5 320 71.9
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 2.0e-146 522.7 324 70.4
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 4.5e-146 521.5 315 74.9
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 5.8e-146 521.2 320 72.5
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 1.0e-145 520.4 320 72.2
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 1.0e-145 520.4 322 71.4
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 1.3e-145 520.0 323 70.9
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 2.2e-145 519.2 331 70.4
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 2.2e-145 519.2 332 70.8
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 4.9e-145 518.1 323 70.6
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 6.5e-145 517.7 320 72.2
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 2.5e-144 515.8 325 70.2
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 4.2e-144 515.0 323 70.9
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 2.1e-143 512.7 324 69.1
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 6.0e-143 511.1 320 70.3
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 7.9e-143 510.8 321 70.7
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 1.0e-142 510.4 318 71.4
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 1.3e-142 510.0 319 70.5
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 1.8e-142 509.6 320 69.7
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 2.3e-142 509.2 324 69.1
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 2.3e-142 509.2 324 69.1
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 2.3e-142 509.2 324 69.1
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 3.0e-142 508.8 328 68.9
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 3.9e-142 508.4 319 69.3
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 3.9e-142 508.4 319 69.3
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 5.1e-142 508.1 318 71.4
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 1.5e-141 506.5 319 69.3
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 2.5e-141 505.8 321 70.1
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 3.3e-141 505.4 332 69.3
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 4.3e-141 505.0 324 69.1
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 9.7e-141 503.8 316 73.4
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 2.2e-140 502.7 318 69.5
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 2.2e-140 502.7 318 69.8
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 3.7e-140 501.9 318 69.5
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 2.4e-139 499.2 275 80.0
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 2.4e-139 499.2 272 78.7
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 4.1e-139 498.4 318 69.2
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 5.3e-139 498.0 328 67.1
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 6.9e-139 497.7 317 68.8
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 3.4e-138 495.4 322 67.4
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 5.9e-138 494.6 318 70.1
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 7.7e-138 494.2 318 68.6
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 1.1e-136 490.3 318 69.8
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 1.1e-136 490.3 318 69.8
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 2.5e-136 489.2 318 69.5
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 3.2e-136 488.8 319 68.0
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 7.2e-136 487.6 319 67.4
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 7.2e-136 487.6 410 56.1
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 2.1e-135 486.1 372 60.8
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 2.7e-135 485.7 320 66.9
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 7.9e-135 484.2 327 66.4
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 7.9e-135 484.2 318 68.2
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 1.4e-134 483.4 322 68.9
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.4e-134 483.4 324 69.8
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 3.9e-134 481.9 324 69.8
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 2.5e-133 479.2 318 67.0
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 2.2e-132 476.1 321 66.7
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 9.1e-131 470.7 409 55.0
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 2.0e-130 469.5 328 64.6
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 1.3e-129 466.8 328 68.6
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 1.7e-129 466.5 315 69.2
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 6.5e-129 464.5 321 64.5
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 5.5e-128 461.5 315 63.5
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 5.5e-128 461.5 320 63.1
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 5.1e-126 454.9 326 66.6
Actinidia16862 Actinidia chinensis HOM05D005172 ORTHO05D006324 2.9e-121 439.1 310 64.2
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 7.4e-117 424.5 316 61.7
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 7.7e-114 414.5 230 79.1
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 1.5e-109 400.2 226 77.4
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 4.1e-107 392.1 245 69.4
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 6.5e-105 384.8 316 56.6
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 3.6e-103 379.0 324 56.8
Nitab4.5_0003540g0100 Nicotiana tabacum HOM05D005172 ORTHO05D006324 7.0e-99 364.8 234 70.5
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 5.0e-97 358.6 252 61.5
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 4.7e-95 352.1 314 52.9
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 9.8e-93 344.4 190 77.4
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 2.2e-92 343.2 322 51.6
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.0e-90 336.7 212 70.3
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 9.5e-88 327.8 269 58.0
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 3.6e-87 325.9 320 47.5
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 1.2e-85 320.9 320 48.1
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 1.3e-84 317.4 239 61.5
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.9e-83 313.5 169 79.3
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 1.7e-81 307.0 179 73.7
TPR.G38637 Trifolium pratense HOM05D005172 ORTHO05D006324 4.3e-80 302.4 198 69.7
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 3.6e-79 299.3 273 51.6
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 6.8e-78 295.0 196 63.8
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 9.8e-77 291.2 168 74.4
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 6.8e-70 268.5 144 82.6
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 7.6e-69 265.0 168 72.0
Ciclev10023330m.g Citrus clementina HOM05D005172 ORTHO05D006324 6.8e-62 241.9 159 71.1
Lalb_Chr06g0166951 Lupinus albus HOM05D005172 ORTHO05D006324 2.5e-56 223.4 164 62.8
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 1.7e-52 210.7 150 62.7
Oeu008479.1 Olea europaea HOM05D005172 ORTHO05D006324 5.8e-45 185.7 140 60.7
CBR_g51501 Chara braunii HOM05D005172 ORTHO05D006324 2.8e-39 166.8 228 40.4
COL.COLO4_23213 Corchorus olitorius HOM05D005172 ORTHO05D006324 2.8e-31 140.2 103 64.1
SMO163G0002 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 2.3e-25 120.6 102 52.9
TPR.G38640 Trifolium pratense HOM05D005172 ORTHO05D006324 1.6e-23 114.4 70 67.1
Ciclev10023884m.g Citrus clementina HOM05D005172 ORTHO05D006324 5.3e-22 109.4 71 70.4
CAN.G1071.4 Capsicum annuum HOM05D005172 ORTHO05D006324 2.6e-21 107.1 97 50.5
CBR_g51503 Chara braunii HOM05D005172 ORTHO05D006324 1.0e-12 78.6 92 39.1
GSVIVG01037608001 Vitis vinifera HOM05D005172 ORTHO05D439154 3.7e-07 60.1 75 42.7


User provided reference genes

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