Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 3.3e-222 774.6 362 100.0
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 1.3e-199 699.5 327 98.8
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 1.1e-198 696.4 324 99.1
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 3.3e-198 694.9 324 99.1
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 4.3e-198 694.5 323 99.1
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 4.2e-193 677.9 363 85.7
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 7.9e-176 620.5 359 78.8
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 2.5e-174 615.5 364 77.2
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 1.3e-173 613.2 366 76.5
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 2.0e-171 605.9 365 76.7
Manes.05G006214 Manihot esculenta HOM05D005172 ORTHO05D006324 3.4e-171 605.1 280 99.6
Manes.05G008035 Manihot esculenta HOM05D005172 ORTHO05D006324 7.7e-171 604.0 280 99.3
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 6.5e-170 600.9 366 75.7
Manes.05G012891 Manihot esculenta HOM05D005172 ORTHO05D006324 6.5e-170 600.9 280 98.9
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 1.6e-168 596.3 358 76.0
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 2.7e-168 595.5 358 74.3
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.3e-167 592.4 365 74.5
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.3e-167 592.4 365 74.5
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 2.6e-166 589.0 364 73.1
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.7e-165 586.3 368 73.4
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 1.7e-165 586.3 365 74.0
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.2e-165 585.9 365 74.5
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 3.7e-165 585.1 366 74.3
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 4.8e-165 584.7 368 73.1
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 6.3e-165 584.3 368 73.1
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 8.2e-165 583.9 365 74.0
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 1.8e-164 582.8 343 77.0
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 1.8e-164 582.8 366 74.3
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 1.8e-164 582.8 360 72.5
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 4.1e-164 581.6 348 74.7
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 4.1e-164 581.6 351 74.1
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 2.0e-163 579.3 351 75.2
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 4.5e-163 578.2 365 73.2
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 5.9e-163 577.8 366 74.0
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 1.7e-162 576.2 350 72.3
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 5.0e-162 574.7 352 74.1
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 9.4e-161 570.5 356 73.3
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 3.9e-159 565.1 359 70.8
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 1.7e-157 559.7 364 71.2
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 1.7e-157 559.7 355 71.3
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 3.7e-157 558.5 350 71.7
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 3.7e-157 558.5 347 72.3
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 1.4e-156 556.6 359 69.4
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 4.1e-156 555.1 347 73.5
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 5.3e-156 554.7 339 72.3
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 2.0e-155 552.7 362 69.1
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 2.6e-155 552.4 356 69.1
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 3.5e-155 552.0 370 68.6
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 5.9e-155 551.2 362 68.5
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 7.7e-155 550.8 362 68.5
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 1.0e-154 550.4 353 70.3
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 1.3e-154 550.1 374 68.7
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 2.9e-154 548.9 337 72.7
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 3.8e-154 548.5 359 68.5
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 5.0e-154 548.1 356 70.2
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 8.5e-154 547.4 314 78.0
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 1.1e-153 547.0 359 68.8
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 1.9e-153 546.2 362 68.8
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 4.2e-153 545.0 338 71.9
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 5.5e-153 544.7 370 68.4
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 3.6e-152 542.0 360 68.1
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 3.6e-152 542.0 360 68.1
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 4.7e-152 541.6 356 69.4
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 8.0e-152 540.8 368 66.8
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 8.0e-152 540.8 360 67.5
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 4.0e-151 538.5 355 67.9
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 6.7e-151 537.7 356 68.0
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 8.8e-151 537.3 355 66.8
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 1.2e-150 537.0 336 71.4
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 1.2e-150 537.0 352 67.9
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 1.2e-150 537.0 348 71.8
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 2.0e-150 536.2 355 68.5
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 2.0e-150 536.2 351 67.8
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 4.4e-150 535.0 360 68.1
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 4.4e-150 535.0 372 65.1
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 9.7e-150 533.9 357 66.9
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 1.3e-149 533.5 357 66.9
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 2.8e-149 532.3 355 67.3
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 4.8e-149 531.6 352 67.0
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 6.3e-149 531.2 352 67.3
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 1.1e-148 530.4 308 74.7
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 2.4e-148 529.3 354 67.2
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 1.2e-147 526.9 347 67.4
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 5.9e-147 524.6 352 66.5
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 1.0e-146 523.9 355 67.3
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 8.5e-146 520.8 362 64.9
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 1.1e-145 520.4 361 65.4
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 4.2e-145 518.5 355 67.0
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 7.2e-145 517.7 354 66.9
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 9.4e-145 517.3 355 66.5
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 1.6e-144 516.5 452 55.8
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 1.0e-143 513.8 358 64.0
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 1.8e-143 513.1 406 59.6
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 3.0e-143 512.3 353 65.7
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 8.8e-143 510.8 357 64.7
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 2.0e-142 509.6 443 55.8
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 1.3e-141 506.9 353 64.6
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 1.7e-141 506.5 356 66.3
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 4.8e-141 505.0 340 65.6
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 5.4e-140 501.5 360 68.1
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 7.0e-140 501.1 359 66.9
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 1.6e-139 500.0 347 68.3
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 2.0e-139 499.6 352 64.8
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 2.0e-139 499.6 359 66.9
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 2.0e-139 499.6 348 63.8
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 2.1e-136 489.6 337 62.9
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 6.1e-136 488.0 360 65.0
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 3.4e-134 482.3 331 66.2
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 6.3e-133 478.0 361 59.6
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 2.4e-132 476.1 354 61.0
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 2.2e-125 453.0 353 59.8
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 2.3e-122 443.0 268 74.6
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 3.9e-122 442.2 270 74.1
Actinidia16862 Actinidia chinensis HOM05D005172 ORTHO05D006324 4.3e-121 438.7 310 64.2
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 3.6e-112 409.1 339 55.8
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 7.5e-110 401.4 286 63.3
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.0e-106 391.0 229 74.7
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 6.6e-106 388.3 291 59.1
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.1e-104 383.3 251 68.9
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 6.8e-103 378.3 324 56.8
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 2.2e-101 373.2 352 50.9
Nitab4.5_0003540g0100 Nicotiana tabacum HOM05D005172 ORTHO05D006324 6.0e-99 365.2 234 70.5
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 5.6e-97 358.6 205 76.6
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 9.0e-95 351.3 218 71.1
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 4.9e-93 345.5 324 51.5
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 9.3e-92 341.3 262 59.9
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 1.0e-90 337.8 360 45.3
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 2.5e-89 333.2 311 53.7
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 2.8e-88 329.7 360 45.6
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 6.2e-88 328.6 234 60.7
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 4.6e-83 312.4 178 80.9
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 1.8e-82 310.5 308 48.4
TPR.G38637 Trifolium pratense HOM05D005172 ORTHO05D006324 1.6e-80 303.9 198 70.2
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 2.1e-80 303.5 201 68.2
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.9e-76 290.4 203 67.5
Ciclev10023330m.g Citrus clementina HOM05D005172 ORTHO05D006324 3.8e-61 239.6 159 70.4
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 6.5e-61 238.8 224 51.8
Lalb_Chr06g0166951 Lupinus albus HOM05D005172 ORTHO05D006324 2.2e-56 223.8 164 62.8
Oeu008479.1 Olea europaea HOM05D005172 ORTHO05D006324 1.3e-45 188.0 276 39.1
CBR_g51501 Chara braunii HOM05D005172 ORTHO05D006324 1.6e-38 164.5 226 39.8
Ciclev10023884m.g Citrus clementina HOM05D005172 ORTHO05D006324 2.7e-35 153.7 109 66.1
TPR.G38640 Trifolium pratense HOM05D005172 ORTHO05D006324 4.4e-33 146.4 109 61.5
COL.COLO4_23213 Corchorus olitorius HOM05D005172 ORTHO05D006324 1.2e-30 138.3 103 63.1
SMO163G0002 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 3.4e-25 120.2 102 52.9
CAN.G1071.4 Capsicum annuum HOM05D005172 ORTHO05D006324 1.5e-20 104.8 97 49.5
CBR_g51503 Chara braunii HOM05D005172 ORTHO05D006324 1.0e-13 82.0 116 36.2
GSVIVG01037608001 Vitis vinifera HOM05D005172 ORTHO05D439154 4.9e-08 63.2 75 45.3


User provided reference genes

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