Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G010100 Manihot esculenta HOM05D007572 ORTHO05D009535 2.5e-74 282.0 135 100.0
Potri.002G188300 Populus trichocarpa HOM05D007572 ORTHO05D009535 2.4e-61 238.8 135 83.7
CiPaw.08G083700 Carya illinoinensis HOM05D007572 ORTHO05D009535 3.4e-55 218.4 135 78.5
Duzib138G0176 Durio zibethinus HOM05D007572 ORTHO05D009535 1.7e-54 216.1 135 75.6
Gohir.A07G131300 Gossypium hirsutum HOM05D007572 ORTHO05D009535 1.7e-54 216.1 135 76.3
PGR142G3328 Punica granatum HOM05D007572 ORTHO05D009535 1.7e-54 216.1 135 75.6
TWI23G0551 Tripterygium wilfordii HOM05D007572 ORTHO05D009535 1.7e-54 216.1 135 77.8
Gohir.D07G135600 Gossypium hirsutum HOM05D007572 ORTHO05D009535 2.4e-53 212.2 135 74.8
arahy.Tifrunner.gnm1.ann1.XSK3JW Arachis hypogaea HOM05D007572 ORTHO05D009535 3.5e-52 208.4 135 74.1
arahy.Tifrunner.gnm1.ann1.W6UB1T Arachis hypogaea HOM05D007572 ORTHO05D009535 1.0e-51 206.8 135 73.3
Medtr7g110410 Medicago truncatula HOM05D007572 ORTHO05D009535 1.3e-51 206.5 135 72.6
Glyma.03G223300 Glycine max HOM05D007572 ORTHO05D009535 1.7e-51 206.1 136 72.8
Psat3g018080 Pisum sativum HOM05D007572 ORTHO05D009535 2.3e-51 205.7 135 72.6
CsaV3_5G029750 Cucumis sativus L. HOM05D007572 ORTHO05D009535 1.1e-50 203.4 135 71.9
Lj1g0010997 Lotus japonicus HOM05D007572 ORTHO05D009535 1.9e-50 202.6 135 71.1
TPR.G2442 Trifolium pratense HOM05D007572 ORTHO05D009535 2.5e-50 202.2 135 71.1
Lalb_Chr04g0260171 Lupinus albus HOM05D007572 ORTHO05D009535 5.6e-50 201.1 135 70.4
Sed0017651 Sechium edule HOM05D007572 ORTHO05D009535 1.6e-49 199.5 135 71.1
MELO3C034050.2 Cucumis melo HOM05D007572 ORTHO05D009535 3.6e-49 198.4 135 69.6
Eucgr.K00578 Eucalyptus grandis HOM05D007572 ORTHO05D009535 4.7e-49 198.0 135 65.9
Nn3g21914 Nelumbo nucifera HOM05D007572 ORTHO05D009535 4.0e-48 194.9 135 67.4
HanXRQChr13g0414461 Helianthus annuus HOM05D007572 ORTHO05D009535 3.4e-47 191.8 135 67.4
Phvul.001G217100 Phaseolus vulgaris HOM05D007572 ORTHO05D009535 3.4e-47 191.8 135 71.1
Dinv12090 Davidia involucrata HOM05D007572 ORTHO05D009535 3.7e-46 188.3 135 69.6
Aqoxy2G02521 Aquilegia oxysepala HOM05D007572 ORTHO05D009535 4.1e-45 184.9 135 67.4
Lsat_1_v5_gn_8_167180 Lactuca sativa HOM05D007572 ORTHO05D009535 9.2e-45 183.7 135 64.4
Sp5g01190 Schrenkiella parvula HOM05D007572 ORTHO05D009535 1.7e-43 179.5 139 65.5
BraA09t40838Z Brassica rapa HOM05D007572 ORTHO05D009535 1.1e-42 176.8 139 66.2
Thhalv10006305m.g Eutrema salsugineum HOM05D007572 ORTHO05D009535 1.9e-42 176.0 139 64.7
Sopen06g004090 Solanum pennellii HOM05D007572 ORTHO05D009535 2.5e-42 175.6 135 65.2
AT3G62190 Arabidopsis thaliana HOM05D007572 ORTHO05D009535 5.6e-42 174.5 140 62.1
BolC8t51291H Brassica oleracea HOM05D007572 ORTHO05D009535 5.6e-42 174.5 139 65.5
C08p37130 Brassica napus HOM05D007572 ORTHO05D009535 7.3e-42 174.1 139 64.7
Solyc06g009340.4 Solanum lycopersicum HOM05D007572 ORTHO05D009535 2.1e-41 172.6 135 64.4
Hund11629 Selenicereus undatus HOM05D007572 ORTHO05D009535 3.6e-41 171.8 135 62.2
CAN.G1280.44 Capsicum annuum HOM05D007572 ORTHO05D009535 4.7e-41 171.4 138 63.0
Oeu052583.1 Olea europaea HOM05D007572 ORTHO05D009535 4.7e-41 171.4 135 62.2
AL5G44940 Arabidopsis lyrata HOM05D007572 ORTHO05D009535 8.1e-41 170.6 139 61.2
Carub.0005s2892 Capsella rubella HOM05D007572 ORTHO05D009535 2.6e-39 165.6 139 60.4
Nitab4.5_0003324g0080 Nicotiana tabacum HOM05D007572 ORTHO05D009535 4.4e-39 164.9 139 62.6
ATR0796G039 Amborella trichopoda HOM05D007572 ORTHO05D009535 1.9e-37 159.5 130 60.0
Cc01_g21830 Coffea canephora HOM05D007572 ORTHO05D009535 5.4e-37 157.9 135 57.0
CDE02G1692 Ceratophyllum demersum HOM05D007572 ORTHO05D009535 9.2e-37 157.1 135 56.3
VMungo1383G1880 Vigna mungo HOM05D007572 ORTHO05D009535 9.2e-37 157.1 125 64.8
vmacro16962 Vaccinium macrocarpon HOM05D007572 ORTHO05D009535 2.7e-36 155.6 117 68.4
PSO210G6566 Papaver somniferum HOM05D007572 ORTHO05D009535 1.7e-35 152.9 145 55.9
PGSC0003DMG400007276 Solanum tuberosum HOM05D007572 ORTHO05D009535 3.3e-34 148.7 114 64.0
Aa31LG10G16130 Aethionema arabicum HOM05D007572 ORTHO05D009535 1.6e-33 146.4 186 46.2
Nitab4.5_0000363g0140 Nicotiana tabacum HOM05D007572 ORTHO05D009535 2.8e-33 145.6 114 63.2
Ah.11g045850 Amaranthus hybridus HOM05D007572 ORTHO05D009535 4.7e-33 144.8 114 64.0
A09p54260 Brassica napus HOM05D007572 ORTHO05D009535 1.4e-32 143.3 126 59.5
Rhsim01G0293200 Rhododendron simsii HOM05D007572 ORTHO05D009535 5.2e-32 141.4 191 48.2
SalBow6G4072 Salvia bowleyana HOM05D007572 ORTHO05D009535 1.4e-29 133.3 135 51.9
Zm00001eb110000 Zea mays HOM05D007572 ORTHO05D009535 7.1e-29 131.0 135 51.1
BcaC07g40711 Brassica carinata HOM05D007572 ORTHO05D009535 3.5e-28 128.6 124 53.2
Migut.D00021 Erythranthe guttata HOM05D007572 ORTHO05D009535 1.7e-27 126.3 149 49.7
Peaxi162Scf00058g02018 Petunia axillaris HOM05D007572 ORTHO05D009535 2.3e-27 125.9 114 57.0
Sabra02G0167000 Salix brachista HOM05D007572 ORTHO05D009535 1.6e-25 119.8 92 64.1
unitig_60.g25647 Utricularia gibba HOM05D007572 ORTHO05D009535 1.8e-24 116.3 138 47.8
QL12p034502 Quercus lobata HOM05D007572 ORTHO05D009535 5.3e-24 114.8 84 69.0
Thecc.01G323700 Theobroma cacao HOM05D000023 ORTHO05D000014 9.0e-24 114.0 72 77.8
Thecc.01G323600 Theobroma cacao HOM05D007572 ORTHO05D009535 1.2e-23 113.6 75 68.0
Haze_05130 Corylus avellana HOM05D007572 ORTHO05D009535 2.6e-23 112.5 64 82.8
SGA_v2.0_scaffold80G25682 Striga asiatica HOM05D007572 ORTHO05D009535 2.6e-23 112.5 172 41.3
Cfa004892 Carpinus fangiana HOM05D007572 ORTHO05D009535 3.4e-23 112.1 74 74.3
Gorai.001G147500 Gossypium raimondii HOM05D007572 ORTHO05D009535 4.5e-23 111.7 63 77.8
Gorai.001G147700 Gossypium raimondii HOM05D007572 ORTHO05D009535 1.7e-22 109.8 64 79.7
Duzib133G1540 Durio zibethinus HOM05D007572 ORTHO05D009535 2.2e-22 109.4 64 81.2
COL.COLO4_23146 Corchorus olitorius HOM05D000023 ORTHO05D000014 7.1e-21 104.4 60 81.7
DCAR_002931 Daucus carota HOM05D007572 ORTHO05D009535 1.6e-20 103.2 66 72.7
Atru.chr5.887 Acer truncatum HOM05D007572 ORTHO05D009535 6.0e-20 101.3 54 85.2
GSVIVG01028266001 Vitis vinifera HOM05D007572 ORTHO05D009535 1.3e-19 100.1 69 66.7
Sabra02G0166900 Salix brachista HOM05D000023 ORTHO05D000014 5.1e-19 98.2 51 86.3
AUR62011699 Chenopodium quinoa HOM05D007572 ORTHO05D009535 8.7e-19 97.4 64 68.8
GSVIVG01028267001 Vitis vinifera HOM05D007572 ORTHO05D009535 1.1e-18 97.1 73 61.6
Sc05g0000110 Simmondsia chinensis HOM05D007572 ORTHO05D009535 2.5e-18 95.9 64 68.8
Pp3c17_19540 Physcomitrium patens HOM05D007572 ORTHO05D009535 7.4e-18 94.4 139 41.7
CANSAT01G2141 Cannabis sativa HOM05D007572 ORTHO05D009535 1.3e-17 93.6 78 56.4
AagrBONN_evm.TU.Sc2ySwM_228.110 Anthoceros agrestis HOM05D007572 ORTHO05D009535 1.6e-17 93.2 139 41.0
Ciclev10023453m.g Citrus clementina HOM05D007572 ORTHO05D009535 3.6e-17 92.0 53 77.4
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 4.8e-17 91.7 78 57.7
ClCG11G013240 Citrullus lanatus HOM05D007572 ORTHO05D009535 6.2e-17 91.3 55 74.5
Ciclev10024492m.g Citrus clementina HOM05D007572 ORTHO05D009535 9.0e-16 87.4 50 80.0
MBI18_g10389_MAGBIO Magnolia biondii HOM05D007572 ORTHO05D009535 9.9e-15 84.0 66 60.6
PSO761G0106 Papaver somniferum HOM05D007572 ORTHO05D009535 1.3e-14 83.6 64 64.1
CARHR172530 Cardamine hirsuta HOM05D007572 ORTHO05D009535 1.7e-14 83.2 68 54.4
CBR_g88332 Chara braunii HOM05D007572 ORTHO05D009535 1.1e-13 80.5 163 33.1
TAR636G1955 Trochodendron aralioides HOM05D007572 ORTHO05D009535 2.4e-13 79.3 56 66.1
Glyma.19G220500 Glycine max HOM05D007572 ORTHO05D009535 9.3e-13 77.4 140 38.6
Atru.chr5.884 Acer truncatum HOM05D007572 ORTHO05D009535 1.2e-12 77.0 70 57.1
BcaB07g33721 Brassica carinata HOM05D007572 ORTHO05D009535 1.2e-12 77.0 60 58.3
Gohir.A12G120600 Gossypium hirsutum HOM05D007572 ORTHO05D009535 1.0e-11 73.9 55 65.5
MBI18_g10388_MAGBIO Magnolia biondii HOM05D000023 ORTHO05D000014 1.3e-11 73.6 57 61.4
SEGI_13004 Sequoiadendron giganteum HOM05D007572 ORTHO05D009535 3.0e-11 72.4 77 49.4
TAR365G0305 Trochodendron aralioides HOM05D007572 ORTHO05D009535 1.1e-08 63.9 56 58.9
Atru.chr5.886 Acer truncatum HOM05D007572 ORTHO05D009535 1.4e-08 63.5 57 57.9
Atru.chr5.889 Acer truncatum HOM05D007572 ORTHO05D009535 1.4e-08 63.5 57 57.9
Os07g0637100 Oryza sativa ssp. japonica HOM05D007572 ORTHO05D009535 4.0e-08 62.0 52 55.8
Os07g0637150 Oryza sativa ssp. japonica HOM05D007572 ORTHO05D009535 1.5e-07 60.1 55 50.9
AagrBONN_evm.TU.Sc2ySwM_362.2777 Anthoceros agrestis HOM05D007572 ORTHO05D009535 6.5e-06 54.7 66 45.5


User provided reference genes

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