Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G008100 Manihot esculenta HOM05D005434 ORTHO05D006412 0.0e+00 1565.4 821 100.0
Potri.002G186200 Populus trichocarpa HOM05D005434 ORTHO05D006412 1.4e-223 780.4 867 54.7
Potri.014G111500 Populus trichocarpa HOM05D005434 ORTHO05D006412 1.9e-209 733.4 867 52.5
Atru.chr5.851 Acer truncatum HOM05D005434 ORTHO05D006412 5.4e-188 662.1 834 49.3
Sabra14G0081900 Salix brachista HOM05D005434 ORTHO05D006412 4.0e-183 646.0 840 50.4
QL12p035062 Quercus lobata HOM05D005434 ORTHO05D006412 6.4e-181 638.6 804 50.9
Thecc.01G326300 Theobroma cacao HOM05D005434 ORTHO05D006412 1.7e-170 604.0 819 47.5
Duzib138G0614 Durio zibethinus HOM05D005434 ORTHO05D006412 5.6e-161 572.4 816 47.2
Duzib133G0025 Durio zibethinus HOM05D005434 ORTHO05D006412 6.4e-157 558.9 786 47.2
CiPaw.08G081800 Carya illinoinensis HOM05D005434 ORTHO05D006412 4.2e-156 556.2 829 44.6
Haze_05156 Corylus avellana HOM05D005434 ORTHO05D006412 3.8e-149 533.1 778 46.8
TWI14G0253 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 1.6e-147 527.7 884 43.6
Gorai.001G148200 Gossypium raimondii HOM05D005434 ORTHO05D006412 1.3e-146 524.6 819 45.3
COL.COLO4_23119 Corchorus olitorius HOM05D005434 ORTHO05D006412 1.7e-146 524.2 811 44.1
Gorai.007G117900 Gossypium raimondii HOM05D005434 ORTHO05D006412 5.6e-145 519.2 873 42.2
Gohir.A11G105400 Gossypium hirsutum HOM05D005434 ORTHO05D006412 1.2e-142 511.5 874 42.2
Dinv12078 Davidia involucrata HOM05D005434 ORTHO05D006412 5.8e-142 509.2 676 49.7
Gohir.D11G110300 Gossypium hirsutum HOM05D005434 ORTHO05D006412 5.5e-140 502.7 877 41.4
MD09G1291300 Malus domestica HOM05D005434 ORTHO05D006412 1.6e-139 501.1 845 41.9
Gohir.A07G131800 Gossypium hirsutum HOM05D005434 ORTHO05D006412 8.7e-138 495.4 819 44.4
Actinidia20964 Actinidia chinensis HOM05D005434 ORTHO05D006412 9.0e-135 485.3 815 42.3
RcHm_v2.0_Chr3g0485651 Rosa chinensis HOM05D005434 ORTHO05D006412 1.2e-134 485.0 834 40.3
SHI34042 Sapria himalayana HOM05D005434 ORTHO05D006412 1.4e-132 478.0 790 44.2
MD17G1286100 Malus domestica HOM05D005434 ORTHO05D006412 7.9e-131 472.2 837 39.7
Prupe.3G001600 Prunus persica HOM05D005434 ORTHO05D006412 6.7e-130 469.2 790 42.4
Glyma.02G007100 Glycine max HOM05D005434 ORTHO05D006412 8.2e-128 462.2 816 40.6
Lj5g0001301 Lotus japonicus HOM05D005434 ORTHO05D006412 1.8e-127 461.1 831 40.8
Gohir.D07G136100 Gossypium hirsutum HOM05D005434 ORTHO05D006412 1.5e-126 458.0 769 44.2
TAR636G0087 Trochodendron aralioides HOM05D005434 ORTHO05D006412 5.0e-125 453.0 837 40.3
FvH4_1g26160 Fragaria vesca HOM05D005434 ORTHO05D006412 3.2e-124 450.3 897 36.8
Phvul.007G208600 Phaseolus vulgaris HOM05D005434 ORTHO05D006412 1.3e-122 444.9 817 39.5
Glyma.10G138700 Glycine max HOM05D005434 ORTHO05D006412 1.5e-121 441.4 847 39.6
FAN19G2204 Fragaria x ananassa HOM05D005434 ORTHO05D006412 2.5e-121 440.7 897 36.7
Rhsim02G0256300 Rhododendron simsii HOM05D005434 ORTHO05D006412 1.3e-120 438.3 803 42.0
TAR365G0925 Trochodendron aralioides HOM05D005434 ORTHO05D006412 1.0e-117 428.7 811 39.6
Psat6g158560 Pisum sativum HOM05D005434 ORTHO05D006412 7.9e-115 419.1 824 38.8
Sed0005889 Sechium edule HOM05D005434 ORTHO05D006412 1.7e-112 411.4 854 37.2
ClCG02G017720 Citrullus lanatus HOM05D005434 ORTHO05D006412 3.7e-112 410.2 803 39.4
FAN23G2884 Fragaria x ananassa HOM05D005434 ORTHO05D006412 6.9e-111 406.0 887 36.3
TPR.G3083 Trifolium pratense HOM05D005434 ORTHO05D006412 7.7e-110 402.5 799 38.2
VMungo0720G1215 Vigna mungo HOM05D005434 ORTHO05D006412 6.5e-109 399.4 763 39.1
Ciclev10019510m.g Citrus clementina HOM05D005434 ORTHO05D006412 7.2e-108 396.0 576 44.6
CsaV3_6G012840 Cucumis sativus L. HOM05D005434 ORTHO05D006412 2.7e-107 394.0 818 37.2
Ca_10237_v3 Cicer arietinum L. HOM05D005434 ORTHO05D006412 2.6e-105 387.5 784 37.6
Sed0026347 Sechium edule HOM05D005434 ORTHO05D006412 1.1e-103 382.1 829 35.9
Cpa.g.sc57.27 Carica papaya HOM05D005434 ORTHO05D006412 2.4e-103 380.9 773 39.2
arahy.Tifrunner.gnm1.ann1.G6BN46 Arachis hypogaea HOM05D005434 ORTHO05D006412 5.3e-103 379.8 850 35.2
Medtr1g085710 Medicago truncatula HOM05D005434 ORTHO05D006412 1.2e-102 378.6 811 37.5
FAN26G2209 Fragaria x ananassa HOM05D005434 ORTHO05D006412 2.9e-101 374.0 866 35.2
CANSAT25G2989 Cannabis sativa HOM05D005434 ORTHO05D006412 1.1e-100 372.1 933 35.0
MELO3C013628.2 Cucumis melo HOM05D005434 ORTHO05D006412 4.2e-100 370.2 830 36.5
AT2G46980 Arabidopsis thaliana HOM05D005434 ORTHO05D006412 2.7e-99 367.5 819 35.7
AL4G46460 Arabidopsis lyrata HOM05D005434 ORTHO05D006412 8.0e-99 365.9 819 35.3
PGR142G2929 Punica granatum HOM05D005434 ORTHO05D006412 1.8e-95 354.8 957 33.6
FAN28G1136 Fragaria x ananassa HOM05D005434 ORTHO05D006412 7.0e-95 352.8 939 33.0
Sp4g28980 Schrenkiella parvula HOM05D005434 ORTHO05D006412 5.9e-94 349.7 826 35.4
DCAR_002941 Daucus carota HOM05D005434 ORTHO05D006412 1.3e-93 348.6 812 35.7
Carub.0004s2971 Capsella rubella HOM05D005434 ORTHO05D006412 2.2e-93 347.8 816 34.8
Thhalv10001318m.g Eutrema salsugineum HOM05D005434 ORTHO05D006412 3.8e-93 347.1 809 35.4
CARHR142350 Cardamine hirsuta HOM05D005434 ORTHO05D006412 3.2e-92 344.0 815 34.0
CiPaw.07G126300 Carya illinoinensis HOM05D005434 ORTHO05D006412 3.6e-91 340.5 615 40.5
TWI23G0760 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 6.1e-91 339.7 656 40.9
Aa31LG1G28350 Aethionema arabicum HOM05D005434 ORTHO05D006412 1.5e-89 335.1 820 35.2
MBI18_g03842_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 2.6e-89 334.3 851 34.1
GSVIVG01028240001 Vitis vinifera HOM05D005434 ORTHO05D006412 2.6e-89 334.3 574 42.7
DCAR_005712 Daucus carota HOM05D005434 ORTHO05D006412 1.4e-87 328.6 962 33.2
Aqoxy2G02439 Aquilegia oxysepala HOM05D005434 ORTHO05D006412 3.1e-87 327.4 869 34.8
PSO210G4596 Papaver somniferum HOM05D005434 ORTHO05D006412 5.4e-87 326.6 911 33.8
Nn3g21972 Nelumbo nucifera HOM05D005434 ORTHO05D006412 1.6e-86 325.1 933 32.7
CSS0010810 Camellia sinensis var. sinensis HOM05D005434 ORTHO05D006412 1.0e-85 322.4 577 43.3
Oeu052591.1 Olea europaea HOM05D005434 ORTHO05D006412 3.8e-85 320.5 728 36.4
C04p00990 Brassica napus HOM05D005434 ORTHO05D006412 1.2e-83 315.5 811 33.3
BraA05t19085Z Brassica rapa HOM05D005434 ORTHO05D006412 6.1e-83 313.2 816 33.1
Eucgr.K00557 Eucalyptus grandis HOM05D005434 ORTHO05D006412 5.2e-82 310.1 834 34.3
Cc01_g21750 Coffea canephora HOM05D005434 ORTHO05D006412 1.3e-80 305.4 831 34.2
Migut.D00008 Erythranthe guttata HOM05D005434 ORTHO05D006412 3.1e-79 300.8 821 33.3
BcaC02g12826 Brassica carinata HOM05D005434 ORTHO05D006412 2.1e-75 288.1 818 31.8
Solyc01g079080.3 Solanum lycopersicum HOM05D005434 ORTHO05D006412 3.4e-73 280.8 840 33.0
PGSC0003DMG400001122 Solanum tuberosum HOM05D005434 ORTHO05D006412 5.7e-73 280.0 843 33.0
Sopen01g030590 Solanum pennellii HOM05D005434 ORTHO05D006412 1.3e-72 278.9 837 32.5
arahy.Tifrunner.gnm1.ann1.9BA1LG Arachis hypogaea HOM05D005434 ORTHO05D006412 1.8e-71 275.0 635 35.7
MBI19_g04828_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 3.2e-71 274.2 845 32.1
Lalb_Chr02g0147191 Lupinus albus HOM05D005434 ORTHO05D006412 1.6e-70 271.9 586 35.8
BolC4t21751H Brassica oleracea HOM05D005434 ORTHO05D006412 3.9e-69 267.3 804 32.7
Peaxi162Scf00309g00625 Petunia axillaris HOM05D005434 ORTHO05D006412 3.9e-69 267.3 861 33.3
A05p00820 Brassica napus HOM05D005434 ORTHO05D006412 1.1e-68 265.8 764 32.2
CAN.G179.30 Capsicum annuum HOM05D005434 ORTHO05D006412 6.2e-67 260.0 845 31.5
BcaC02g12619 Brassica carinata HOM05D005434 ORTHO05D006412 4.9e-64 250.4 617 33.5
AUR62011691 Chenopodium quinoa HOM05D005434 ORTHO05D006412 1.2e-62 245.7 821 32.6
Nitab4.5_0000222g0380 Nicotiana tabacum HOM05D005434 ORTHO05D006412 1.2e-62 245.7 838 31.1
EL10Ac4g10377 Beta vulgaris HOM05D005434 ORTHO05D006412 4.6e-62 243.8 799 33.5
Lj1A7T44 Lonicera japonica HOM05D005434 ORTHO05D006412 7.8e-62 243.0 518 38.0
Actinidia25873 Actinidia chinensis HOM05D005434 ORTHO05D006412 8.1e-59 233.0 633 33.8
ECA247G2130 Erigeron canadensis HOM05D005434 ORTHO05D008082 5.2e-58 230.3 827 30.2
Dinv33176 Davidia involucrata HOM05D005434 ORTHO05D006412 2.2e-56 224.9 480 37.5
Lsat_1_v5_gn_9_7120 Lactuca sativa HOM05D005434 ORTHO05D006412 4.9e-56 223.8 823 29.8
Nitab4.5_0003092g0060 Nicotiana tabacum HOM05D005434 ORTHO05D006412 7.1e-55 219.9 894 29.6
Sc17g0000070 Simmondsia chinensis HOM05D005434 ORTHO05D006412 1.6e-54 218.8 803 31.3
AUR62024551 Chenopodium quinoa HOM05D005434 ORTHO05D006412 1.5e-52 212.2 827 31.7
Lj1A7G43 Lonicera japonica HOM05D005434 ORTHO05D006412 4.7e-51 207.2 226 51.8
SGA_v2.0_scaffold310G48189 Striga asiatica HOM05D005434 ORTHO05D006412 2.7e-46 191.4 830 29.2
Lalb_Chr02g0147201 Lupinus albus HOM05D005434 ORTHO05D006412 1.0e-45 189.5 207 53.1
HPP92_011320 Vanilla planifolia HOM05D005434 ORTHO05D006412 1.6e-43 182.2 895 28.6
SGA_v2.0_scaffold417G51248 Striga asiatica HOM05D005434 ORTHO05D006412 2.1e-43 181.8 922 27.2
GSVIVG01028239001 Vitis vinifera HOM05D005434 ORTHO05D006412 3.9e-37 161.0 136 62.5
Zm00001eb233800 Zea mays HOM05D005434 ORTHO05D006412 2.4e-34 151.8 651 27.3
CiPaw.07G126400 Carya illinoinensis HOM05D005434 ORTHO05D006412 2.6e-33 148.3 136 58.1
Os10g0405500 Oryza sativa ssp. japonica HOM05D005434 ORTHO05D006412 9.9e-33 146.4 494 29.8
Sc17g0000050 Simmondsia chinensis HOM05D005434 ORTHO05D006412 1.6e-30 139.0 175 47.4
CDE02G0039 Ceratophyllum demersum HOM05D005434 ORTHO05D006412 3.0e-29 134.8 161 49.1
Ciclev10023478m.g Citrus clementina HOM05D005434 ORTHO05D006412 3.9e-29 134.4 99 72.7
Dinv33178 Davidia involucrata HOM05D005434 ORTHO05D006412 2.6e-25 121.7 108 63.0
BcaB07g33880 Brassica carinata HOM05D005434 ORTHO05D006412 2.9e-24 118.2 405 29.4
FAN12G4172 Fragaria x ananassa HOM05D005434 ORTHO05D006412 9.0e-18 96.7 128 41.4
Dinv33187 Davidia involucrata HOM05D005434 ORTHO05D006412 7.6e-17 93.6 299 32.4
unitig_62.g23901 Utricularia gibba HOM05D005434 ORTHO05D006412 1.0e-16 93.2 242 31.0
Sc17g0000060 Simmondsia chinensis HOM05D005434 ORTHO05D006412 8.4e-16 90.1 615 26.3
SEGI_30180 Sequoiadendron giganteum HOM05D005434 ORTHO05D006412 6.0e-14 84.0 165 31.5
Actinidia21335 Actinidia chinensis HOM05D005434 ORTHO05D006412 1.8e-13 82.4 118 44.1
FAN18G2209 Fragaria x ananassa HOM05D005434 ORTHO05D006412 3.9e-13 81.3 124 41.1
Dinv12077 Davidia involucrata HOM05D005434 ORTHO05D006412 5.1e-13 80.9 87 49.4
PGSC0003DMG400023095 Solanum tuberosum HOM05D005434 ORTHO05D007977 4.3e-12 77.8 126 39.7
Dinv33188 Davidia involucrata HOM05D005434 ORTHO05D006412 1.3e-11 76.3 100 51.0
BolC3t15425H Brassica oleracea HOM05D005434 ORTHO05D006412 1.6e-11 75.9 141 32.6
BcaC01g05050 Brassica carinata HOM05D005434 ORTHO05D006412 3.7e-11 74.7 70 54.3
vmacro08149 Vaccinium macrocarpon HOM05D005434 ORTHO05D006412 3.7e-11 74.7 238 31.1
C03p30750 Brassica napus HOM05D005434 ORTHO05D011138 6.3e-11 73.9 137 34.3
Dinv33177 Davidia involucrata HOM05D005434 ORTHO05D006412 4.1e-10 71.2 112 39.3
CDE08G1326 Ceratophyllum demersum HOM05D005434 ORTHO05D006412 9.0e-10 70.1 71 52.1
Mapoly0021s0152 Marchantia polymorpha HOM05D022252 ORTHO05D006412 5.9e-09 67.4 164 24.4
FvH4_4g08230 Fragaria vesca HOM05D005434 ORTHO05D006412 1.3e-08 66.2 102 36.3
HanXRQChr10g0286491 Helianthus annuus HOM05D005434 ORTHO05D006412 1.4e-07 62.8 245 26.9
SMO367G0284 Selaginella moellendorffii HOM05D022252 ORTHO05D006993 2.7e-06 58.5 174 27.0


User provided reference genes

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