Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G008035 Manihot esculenta HOM05D005172 ORTHO05D006324 7.0e-172 607.1 280 100.0
Manes.05G006214 Manihot esculenta HOM05D005172 ORTHO05D006324 1.6e-171 605.9 280 99.6
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 1.6e-171 605.9 280 99.6
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 5.9e-171 604.0 280 99.3
Manes.05G012891 Manihot esculenta HOM05D005172 ORTHO05D006324 5.9e-171 604.0 280 99.6
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 7.7e-171 603.6 280 99.3
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 1.3e-170 602.8 280 98.9
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 1.7e-170 602.4 280 99.3
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 3.5e-147 525.0 281 84.7
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 5.1e-138 494.6 282 79.4
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 8.6e-138 493.8 277 81.2
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 1.9e-137 492.7 283 78.8
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 5.2e-135 484.6 283 78.1
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 2.0e-134 482.6 283 77.0
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 6.4e-133 477.6 282 75.2
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 8.4e-133 477.2 284 76.1
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 1.1e-132 476.9 275 76.4
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 1.4e-132 476.5 281 76.9
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 5.4e-132 474.6 283 76.3
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 5.4e-132 474.6 283 76.3
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 7.1e-132 474.2 284 75.7
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 9.2e-132 473.8 284 75.7
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 9.2e-132 473.8 283 76.0
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 4.6e-131 471.5 283 77.0
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 1.0e-130 470.3 281 76.2
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 3.9e-130 468.4 275 76.0
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 3.9e-130 468.4 275 76.4
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 6.6e-130 467.6 278 74.8
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 1.9e-129 466.1 283 74.9
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 1.9e-129 466.1 276 75.7
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 2.5e-129 465.7 283 74.2
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 2.5e-129 465.7 275 76.4
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 5.6e-129 464.5 288 72.6
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 5.6e-129 464.5 283 74.9
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 1.3e-128 463.4 283 74.9
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 1.6e-128 463.0 275 73.5
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 2.1e-128 462.6 274 75.9
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 3.6e-128 461.8 280 73.6
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 1.4e-127 459.9 266 77.1
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 2.4e-127 459.1 279 72.0
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 2.6e-126 455.7 276 73.2
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 1.3e-125 453.4 288 70.8
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 1.7e-125 453.0 281 70.8
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 2.2e-125 452.6 280 71.1
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 2.9e-125 452.2 276 71.4
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 2.9e-125 452.2 280 71.4
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 3.8e-125 451.8 280 71.4
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 4.9e-125 451.4 280 71.1
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 1.4e-124 449.9 276 71.7
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 1.4e-124 449.9 280 71.4
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 1.9e-124 449.5 276 72.1
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 1.9e-124 449.5 279 72.0
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 2.4e-124 449.1 282 71.3
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 5.4e-124 448.0 275 72.0
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 9.3e-124 447.2 280 69.3
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 1.6e-123 446.4 275 72.4
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 1.6e-123 446.4 276 71.7
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 6.0e-123 444.5 276 70.3
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 7.8e-123 444.1 276 69.9
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 1.0e-122 443.7 280 69.3
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 1.0e-122 443.7 280 69.3
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 1.0e-122 443.7 280 69.3
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 3.0e-122 442.2 284 69.0
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 3.0e-122 442.2 277 71.5
Actinidia16862 Actinidia chinensis HOM05D005172 ORTHO05D006324 1.5e-121 439.9 310 64.2
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 1.9e-121 439.5 280 69.3
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 2.5e-121 439.1 288 68.8
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 1.6e-120 436.4 277 69.7
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 2.1e-120 436.0 274 70.4
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 2.4e-119 432.6 275 70.9
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 6.9e-119 431.0 289 67.8
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 9.0e-119 430.6 275 69.1
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 9.0e-119 430.6 285 66.7
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 1.2e-118 430.3 271 72.0
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 1.5e-118 429.9 276 68.8
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 1.5e-118 429.9 232 81.5
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 2.0e-118 429.5 274 69.7
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 2.6e-118 429.1 275 70.5
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 5.8e-118 427.9 275 70.5
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 2.9e-117 425.6 278 68.0
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 2.9e-117 425.6 275 69.8
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 4.9e-117 424.9 278 67.3
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 4.9e-117 424.9 275 67.3
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 8.4e-117 424.1 275 66.2
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 8.4e-117 424.1 275 66.2
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 8.4e-117 424.1 272 71.3
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 7.1e-116 421.0 275 68.0
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 1.2e-115 420.2 275 66.5
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 1.2e-115 420.2 275 66.9
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 7.9e-115 417.5 275 66.5
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 1.8e-114 416.4 275 66.9
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 3.0e-114 415.6 284 65.5
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 8.7e-114 414.1 275 68.0
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 1.1e-113 413.7 275 65.8
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 1.5e-113 413.3 229 76.4
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 1.5e-113 413.3 367 54.0
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 2.5e-113 412.5 281 68.7
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 7.4e-113 411.0 281 68.7
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 2.1e-112 409.5 275 66.9
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 2.8e-112 409.1 328 58.2
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 6.2e-112 407.9 276 64.9
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 1.4e-111 406.8 279 66.7
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 1.2e-110 403.7 285 64.2
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 5.8e-110 401.4 275 65.1
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 1.0e-109 400.6 366 53.3
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 3.2e-108 395.6 268 69.8
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 9.3e-108 394.0 277 63.5
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 3.5e-107 392.1 276 62.0
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 1.3e-106 390.2 272 62.1
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 5.3e-103 378.3 271 65.7
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 1.5e-102 376.7 284 65.1
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 7.9e-99 364.4 316 56.0
Nitab4.5_0003540g0100 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.8e-98 363.2 234 70.1
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 7.7e-94 347.8 273 59.3
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 3.8e-93 345.5 186 80.1
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 3.6e-91 339.0 270 57.4
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 3.1e-87 325.9 271 55.7
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 6.9e-87 324.7 201 68.7
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 9.1e-87 324.3 183 77.0
TPR.G38637 Trifolium pratense HOM05D005172 ORTHO05D006324 3.7e-80 302.4 198 69.7
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 3.1e-79 299.3 279 51.3
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 5.0e-77 292.0 277 48.4
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 6.5e-77 291.6 209 60.8
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 1.8e-74 283.5 277 49.1
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 9.7e-73 277.7 147 80.3
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 2.8e-72 276.2 231 57.1
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 2.4e-71 273.1 193 64.2
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.6e-70 269.6 169 71.0
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 1.2e-65 254.2 226 51.3
Ciclev10023330m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.7e-61 240.4 159 70.4
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 5.5e-60 235.3 125 79.2
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 9.4e-60 234.6 136 74.3
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 4.0e-58 229.2 152 64.5
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 3.4e-57 226.1 124 76.6
Lalb_Chr06g0166951 Lupinus albus HOM05D005172 ORTHO05D006324 2.2e-56 223.4 164 62.8
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 4.2e-52 209.1 133 69.2
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 4.9e-48 195.7 125 71.2
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 4.1e-47 192.6 101 85.1
Oeu008479.1 Olea europaea HOM05D005172 ORTHO05D006324 3.5e-46 189.5 276 39.5
CBR_g51501 Chara braunii HOM05D005172 ORTHO05D006324 7.0e-39 165.2 228 39.9
COL.COLO4_23213 Corchorus olitorius HOM05D005172 ORTHO05D006324 5.4e-31 139.0 103 63.1
SMO163G0002 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 5.8e-25 119.0 102 52.0
CAN.G1071.4 Capsicum annuum HOM05D005172 ORTHO05D006324 6.6e-21 105.5 97 49.5
GSVIVG01037608001 Vitis vinifera HOM05D005172 ORTHO05D439154 3.8e-08 63.2 40 67.5
CBR_g51503 Chara braunii HOM05D005172 ORTHO05D006324 3.5e-06 56.6 47 44.7


User provided reference genes

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