Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G007900 Manihot esculenta HOM05D006834 ORTHO05D008623 5.3e-185 651.0 349 100.0
Atru.chr5.848 Acer truncatum HOM05D006834 ORTHO05D008623 5.9e-120 434.9 353 66.3
QL12p035081 Quercus lobata HOM05D006834 ORTHO05D008623 2.5e-118 429.5 351 64.7
QL12p035100 Quercus lobata HOM05D006834 ORTHO05D008623 2.5e-118 429.5 351 64.7
Sabra02G0148600 Salix brachista HOM05D006834 ORTHO05D008623 3.3e-118 429.1 355 67.9
Potri.002G186100 Populus trichocarpa HOM05D006834 ORTHO05D008623 6.8e-116 421.4 356 66.9
GSVIVG01028237001 Vitis vinifera HOM05D006834 ORTHO05D008623 5.4e-113 411.8 354 63.6
Thecc.01G326600 Theobroma cacao HOM05D006834 ORTHO05D008623 6.6e-111 404.8 354 64.4
Duzib138G0585 Durio zibethinus HOM05D006834 ORTHO05D008623 4.3e-110 402.1 355 63.4
TWI14G0919 Tripterygium wilfordii HOM05D006834 ORTHO05D008623 3.6e-109 399.1 353 63.7
Ciclev10020225m.g Citrus clementina HOM05D006834 ORTHO05D008623 6.8e-108 394.8 353 61.8
Cfa004921 Carpinus fangiana HOM05D006834 ORTHO05D008623 9.8e-107 391.0 357 61.1
Cpa.g.sc57.31 Carica papaya HOM05D006834 ORTHO05D008623 1.7e-106 390.2 353 61.5
Dinv12076 Davidia involucrata HOM05D006834 ORTHO05D008623 1.7e-106 390.2 325 64.0
CiPaw.08G082000 Carya illinoinensis HOM05D006834 ORTHO05D008623 1.1e-105 387.5 360 61.1
Lj1g0008019 Lotus japonicus HOM05D006834 ORTHO05D008623 2.4e-105 386.3 324 60.8
Glyma.19G222100 Glycine max HOM05D006834 ORTHO05D008623 7.0e-105 384.8 354 58.8
TWI59G0932 Tripterygium wilfordii HOM05D006834 ORTHO05D008623 6.0e-104 381.7 327 65.1
COL.COLO4_23116 Corchorus olitorius HOM05D006834 ORTHO05D008623 1.3e-103 380.6 325 65.5
Haze_05159 Corylus avellana HOM05D006834 ORTHO05D008623 2.3e-103 379.8 357 59.4
Gohir.A12G119200 Gossypium hirsutum HOM05D006834 ORTHO05D008623 5.0e-103 378.6 325 63.4
Gorai.008G133900 Gossypium raimondii HOM05D006834 ORTHO05D008623 1.9e-102 376.7 325 63.4
Lalb_Chr18g0046351 Lupinus albus HOM05D006834 ORTHO05D008623 1.9e-102 376.7 349 58.2
CSS0011680 Camellia sinensis var. sinensis HOM05D006834 ORTHO05D008623 4.3e-102 375.6 360 60.0
VMungo1383G1632 Vigna mungo HOM05D006834 ORTHO05D008623 7.3e-102 374.8 341 58.1
Phvul.001G218900 Phaseolus vulgaris HOM05D006834 ORTHO05D008623 2.1e-101 373.2 352 57.1
Eucgr.A00997 Eucalyptus grandis HOM05D006834 ORTHO05D008623 3.1e-100 369.4 324 63.6
TPR.G8370 Trifolium pratense HOM05D006834 ORTHO05D008623 8.9e-100 367.9 324 59.9
CANSAT25G0194 Cannabis sativa HOM05D006834 ORTHO05D008623 1.2e-99 367.5 352 58.0
Sed0016094 Sechium edule HOM05D006834 ORTHO05D008623 2.0e-99 366.7 347 56.8
Psat3g017400 Pisum sativum HOM05D006834 ORTHO05D008623 3.4e-99 365.9 324 59.9
Actinidia21334 Actinidia chinensis HOM05D006834 ORTHO05D008623 7.5e-99 364.8 353 58.1
PGR042G0322 Punica granatum HOM05D006834 ORTHO05D008623 2.9e-98 362.8 327 60.9
vmacro15952 Vaccinium macrocarpon HOM05D006834 ORTHO05D008623 1.1e-97 360.9 326 58.6
Medtr7g110820 Medicago truncatula HOM05D006834 ORTHO05D008623 3.2e-97 359.4 326 57.7
MD09G1291400 Malus domestica HOM05D006834 ORTHO05D008623 7.1e-97 358.2 338 57.7
Gohir.D12G123000 Gossypium hirsutum HOM05D006834 ORTHO05D008623 4.6e-96 355.5 312 63.5
TAR636G0448 Trochodendron aralioides HOM05D006834 ORTHO05D008623 1.3e-95 354.0 357 56.9
ClCG01G007130 Citrullus lanatus HOM05D006834 ORTHO05D008623 3.3e-94 349.4 324 58.6
MBI18_g03845_MAGBIO Magnolia biondii HOM05D006834 ORTHO05D008623 5.6e-94 348.6 346 55.8
Nn4g25303 Nelumbo nucifera HOM05D006834 ORTHO05D008623 8.1e-93 344.7 333 59.5
Aqoxy2G02436 Aquilegia oxysepala HOM05D006834 ORTHO05D008623 2.3e-92 343.2 324 56.8
CsaV3_5G017580 Cucumis sativus L. HOM05D006834 ORTHO05D008623 3.1e-92 342.8 331 55.6
Rhsim01G0000800 Rhododendron simsii HOM05D006834 ORTHO05D008623 1.3e-90 337.4 353 53.8
A09p54180 Brassica napus HOM05D006834 ORTHO05D008623 3.5e-88 329.3 352 54.0
Prupe.3G001500 Prunus persica HOM05D006834 ORTHO05D008623 7.8e-88 328.2 327 57.2
Aa31LG10G16050 Aethionema arabicum HOM05D006834 ORTHO05D008623 3.9e-87 325.9 352 53.4
Hma1.2p1_0408F.1_g146240 Hydrangea macrophylla HOM05D006834 ORTHO05D008623 5.1e-87 325.5 299 59.2
BraA09t40830Z Brassica rapa HOM05D006834 ORTHO05D008623 1.5e-86 323.9 352 53.1
AT3G62080 Arabidopsis thaliana HOM05D006834 ORTHO05D008623 1.9e-86 323.6 352 52.6
arahy.Tifrunner.gnm1.ann1.W0LIHS Arachis hypogaea HOM05D006834 ORTHO05D008623 1.9e-86 323.6 352 51.4
AL5G44760 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 2.5e-86 323.2 352 52.8
PSO210G3353 Papaver somniferum HOM05D006834 ORTHO05D008623 2.5e-86 323.2 344 53.8
PSO761G0283 Papaver somniferum HOM05D006834 ORTHO05D008623 2.5e-86 323.2 344 53.2
AL5G44880 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 3.3e-86 322.8 349 52.4
arahy.Tifrunner.gnm1.ann1.AJ9Z2K Arachis hypogaea HOM05D006834 ORTHO05D008623 4.3e-86 322.4 352 51.1
C08p37040 Brassica napus HOM05D006834 ORTHO05D008623 1.2e-85 320.9 352 52.8
Cc01_g21740 Coffea canephora HOM05D006834 ORTHO05D008623 4.7e-85 318.9 331 52.0
BolC8t51281H Brassica oleracea HOM05D006834 ORTHO05D008623 6.2e-85 318.5 352 52.6
MELO3C005199.2 Cucumis melo HOM05D006834 ORTHO05D008623 1.4e-84 317.4 333 53.2
Sp5g01290 Schrenkiella parvula HOM05D006834 ORTHO05D008623 3.1e-84 316.2 351 51.6
Carub.0005s2883 Capsella rubella HOM05D006834 ORTHO05D008623 6.9e-84 315.1 322 53.7
CARHR172420 Cardamine hirsuta HOM05D006834 ORTHO05D008623 1.2e-83 314.3 351 50.4
Thhalv10005996m.g Eutrema salsugineum HOM05D006834 ORTHO05D008623 9.9e-83 311.2 353 51.0
ATR0796G131 Amborella trichopoda HOM05D006834 ORTHO05D008623 4.9e-82 308.9 291 54.3
Oeu008276.1 Olea europaea HOM05D006834 ORTHO05D008623 3.2e-81 306.2 389 47.3
FvH4_1g26150 Fragaria vesca HOM05D006834 ORTHO05D008623 1.1e-78 297.7 340 49.4
THA.LOC104817424 Tarenaya hassleriana HOM05D006834 ORTHO05D008623 1.5e-78 297.4 353 50.4
FAN19G1238 Fragaria x ananassa HOM05D006834 ORTHO05D008623 1.9e-78 297.0 364 47.8
PGSC0003DMG401001116 Solanum tuberosum HOM05D006834 ORTHO05D008623 1.9e-78 297.0 353 49.0
AUR62001071 Chenopodium quinoa HOM05D006834 ORTHO05D008623 5.6e-78 295.4 332 51.5
AUR62032606 Chenopodium quinoa HOM05D006834 ORTHO05D008623 9.6e-78 294.7 332 50.9
Lsat_1_v5_gn_8_167261 Lactuca sativa HOM05D006834 ORTHO05D008623 2.1e-77 293.5 322 51.9
Nitab4.5_0007915g0010 Nicotiana tabacum HOM05D006834 ORTHO05D008623 3.6e-77 292.7 352 47.4
Sopen01g030580 Solanum pennellii HOM05D006834 ORTHO05D008623 3.1e-76 289.7 353 48.2
BcaC07g40700 Brassica carinata HOM05D006834 ORTHO05D008623 3.4e-75 286.2 352 50.0
FAN23G1444 Fragaria x ananassa HOM05D006834 ORTHO05D008623 3.4e-75 286.2 336 48.8
FAN26G0527 Fragaria x ananassa HOM05D006834 ORTHO05D008623 3.4e-75 286.2 334 49.1
RcHm_v2.0_Chr3g0485641 Rosa chinensis HOM05D006834 ORTHO05D008623 5.8e-75 285.4 267 58.1
HanXRQChr06g0167961 Helianthus annuus HOM05D006834 ORTHO05D008623 3.8e-74 282.7 324 50.0
Nitab4.5_0003092g0080 Nicotiana tabacum HOM05D006834 ORTHO05D008623 1.1e-73 281.2 323 48.9
CAN.G179.29 Capsicum annuum HOM05D006834 ORTHO05D008623 2.4e-73 280.0 323 49.8
Migut.D01683 Erythranthe guttata HOM05D006834 ORTHO05D008623 2.7e-72 276.6 316 50.3
Ah.12g061380 Amaranthus hybridus HOM05D006834 ORTHO05D008623 1.9e-70 270.4 355 47.6
ECA236G2058 Erigeron canadensis HOM05D006834 ORTHO05D007803 3.7e-69 266.2 322 49.7
MSTRG.21731 Avicennia marina HOM05D006834 ORTHO05D008623 8.1e-69 265.0 312 46.2
AUR62031719 Chenopodium quinoa HOM05D006834 ORTHO05D008623 4.0e-68 262.7 322 49.1
Ca_09251_v3 Cicer arietinum L. HOM05D006834 ORTHO05D008623 1.5e-67 260.8 216 62.0
SGA_v2.0_scaffold310G48195 Striga asiatica HOM05D006834 ORTHO05D008623 5.8e-67 258.8 367 43.9
HPP92_001172 Vanilla planifolia HOM05D006834 ORTHO05D008623 1.2e-64 251.1 238 53.8
CDE01G0777 Ceratophyllum demersum HOM05D006834 ORTHO05D008623 6.0e-64 248.8 235 56.2
EL10Ac9g22392 Beta vulgaris HOM05D006834 ORTHO05D008623 5.6e-62 242.3 351 42.5
Zm00001eb129510 Zea mays HOM05D006834 ORTHO05D008623 7.6e-59 231.9 304 44.1
Os01g0286000 Oryza sativa ssp. japonica HOM05D006834 ORTHO05D008623 7.9e-56 221.9 325 40.3
DCAR_012294 Daucus carota HOM05D006834 ORTHO05D008623 7.4e-54 215.3 329 41.9
Peaxi162Scf00309g00622 Petunia axillaris HOM05D006834 ORTHO05D008623 3.3e-46 189.9 239 48.1
Pp3c3_29200 Physcomitrium patens HOM05D006834 ORTHO05D008623 1.1e-44 184.9 257 37.7
SMO339G0071 Selaginella moellendorffii HOM05D006834 ORTHO05D008623 1.1e-38 164.9 268 36.9
Mapoly0053s0040 Marchantia polymorpha HOM05D006834 ORTHO05D008623 3.3e-38 163.3 274 33.9
MELO3C028884.2 Cucumis melo HOM05D006834 ORTHO05D008623 7.7e-27 125.6 121 54.5
Sc05g0000050 Simmondsia chinensis HOM05D006834 ORTHO05D008623 9.4e-25 118.6 122 47.5
Peaxi162Scf00309g00627 Petunia axillaris HOM05D006834 ORTHO05D008623 1.1e-20 105.1 116 46.6
Solyc01g079060.4 Solanum lycopersicum HOM05D006834 ORTHO05D008623 1.7e-18 97.8 116 44.0
CBR_g12374 Chara braunii HOM05D006834 ORTHO05D008623 5.5e-17 92.8 204 32.8
HPP92_010139 Vanilla planifolia HOM05D006834 ORTHO05D008623 3.7e-13 80.1 112 46.4
Sc05g0000060 Simmondsia chinensis HOM05D006834 ORTHO05D008623 2.9e-10 70.5 97 47.4
SEGI_05800 Sequoiadendron giganteum HOM05D001726 ORTHO05D001761 6.8e-07 59.3 167 26.3
Gohir.D08G265200 Gossypium hirsutum HOM05D001726 ORTHO05D001761 2.0e-06 57.8 162 28.4
Gorai.004G283100 Gossypium raimondii HOM05D001726 ORTHO05D001761 2.0e-06 57.8 162 28.4
GSVIVG01015258001 Vitis vinifera HOM05D001726 ORTHO05D001761 2.0e-06 57.8 162 26.5
Gohir.A08G244300 Gossypium hirsutum HOM05D001726 ORTHO05D001761 2.6e-06 57.4 162 28.4
FvH4_1g06720 Fragaria vesca HOM05D001726 ORTHO05D001761 3.4e-06 57.0 162 26.5
FAN19G1466 Fragaria x ananassa HOM05D001726 ORTHO05D001761 3.4e-06 57.0 162 26.5
FAN23G2685 Fragaria x ananassa HOM05D001726 ORTHO05D001761 3.4e-06 57.0 162 26.5
FAN26G0969 Fragaria x ananassa HOM05D001726 ORTHO05D001761 3.4e-06 57.0 162 26.5
FAN26G3035 Fragaria x ananassa HOM05D001726 ORTHO05D001761 3.4e-06 57.0 162 26.5
FAN28G2640 Fragaria x ananassa HOM05D001726 ORTHO05D001761 3.4e-06 57.0 162 26.5
MD15G1201900 Malus domestica HOM05D001726 ORTHO05D001761 3.4e-06 57.0 162 26.5
Mapoly0016s0116 Marchantia polymorpha HOM05D001726 ORTHO05D001761 3.4e-06 57.0 169 28.4
RcHm_v2.0_Chr2g0092461 Rosa chinensis HOM05D001726 ORTHO05D001761 3.4e-06 57.0 162 26.5
BcaNung01329 Brassica carinata HOM05D001726 ORTHO05D001761 4.4e-06 56.6 164 26.2
Lsat_1_v5_gn_6_7580 Lactuca sativa HOM05D001726 ORTHO05D001761 4.4e-06 56.6 164 25.6
Hund00714 Selenicereus undatus HOM05D001726 ORTHO05D001761 4.4e-06 56.6 174 25.9
Migut.K00569 Erythranthe guttata HOM05D001726 ORTHO05D001761 5.7e-06 56.2 169 29.0
MSTRG.6034 Avicennia marina HOM05D001726 ORTHO05D001761 7.5e-06 55.8 162 27.2
ECA233G4477 Erigeron canadensis HOM05D001726 ORTHO05D001761 7.5e-06 55.8 160 23.8
Zm00001eb162120 Zea mays HOM05D001726 ORTHO05D001761 7.5e-06 55.8 161 27.3
C07p56700 Brassica napus HOM05D006447 ORTHO05D007938 9.8e-06 55.5 179 25.7
BolC7t46152H Brassica oleracea HOM05D006447 ORTHO05D007938 9.8e-06 55.5 179 25.7
CAN.G309.61 Capsicum annuum HOM05D001726 ORTHO05D001761 9.8e-06 55.5 162 26.5
Ciclev10009534m.g Citrus clementina HOM05D001726 ORTHO05D001761 9.8e-06 55.5 162 26.5
DCAR_012013 Daucus carota HOM05D001726 ORTHO05D001761 9.8e-06 55.5 165 25.5
Duzib187G0995 Durio zibethinus HOM05D001726 ORTHO05D001761 9.8e-06 55.5 162 26.5
Gohir.A06G070000 Gossypium hirsutum HOM05D001726 ORTHO05D001761 9.8e-06 55.5 162 26.5
Gohir.A07G009700 Gossypium hirsutum HOM05D001726 ORTHO05D001761 9.8e-06 55.5 167 25.7
Lalb_Chr22g0349821 Lupinus albus HOM05D001726 ORTHO05D001761 9.8e-06 55.5 162 25.9
Sp7g27090 Schrenkiella parvula HOM05D001726 ORTHO05D001761 9.8e-06 55.5 177 26.0
Zm00001eb061610 Zea mays HOM05D001726 ORTHO05D001761 9.8e-06 55.5 160 25.6


User provided reference genes

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