Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G005500 Manihot esculenta HOM05D007869 ORTHO05D009962 3.6e-177 624.8 314 100.0
Sabra02G0132700 Salix brachista HOM05D007869 ORTHO05D009962 2.4e-120 436.0 301 71.1
Sabra14G0079800 Salix brachista HOM05D007869 ORTHO05D009962 5.3e-120 434.9 312 70.2
Potri.014G108300 Populus trichocarpa HOM05D007869 ORTHO05D009962 1.3e-118 430.3 301 69.4
Duzib138G0629 Durio zibethinus HOM05D007869 ORTHO05D009962 5.5e-117 424.9 305 66.6
Thecc.01G330400 Theobroma cacao HOM05D007869 ORTHO05D009962 9.4e-117 424.1 303 68.3
Atru.chr5.803 Acer truncatum HOM05D007869 ORTHO05D009962 3.6e-116 422.2 310 65.8
Cfa003717 Carpinus fangiana HOM05D007869 ORTHO05D009962 5.2e-115 418.3 304 65.5
Haze_15765 Corylus avellana HOM05D007869 ORTHO05D009962 8.8e-115 417.5 304 65.8
Prupe.2G203300 Prunus persica HOM05D007869 ORTHO05D009962 8.8e-115 417.5 303 65.7
Ciclev10021277m.g Citrus clementina HOM05D007869 ORTHO05D009962 7.5e-114 414.5 296 67.2
TWI14G0946 Tripterygium wilfordii HOM05D007869 ORTHO05D009962 1.8e-112 409.8 314 62.4
CiPaw.02G045900 Carya illinoinensis HOM05D007869 ORTHO05D009962 5.9e-111 404.8 306 63.4
COL.COLO4_23074 Corchorus olitorius HOM05D007869 ORTHO05D009962 2.9e-110 402.5 308 63.3
CANSAT56G0171 Cannabis sativa HOM05D007869 ORTHO05D009962 2.0e-106 389.8 298 60.7
RcHm_v2.0_Chr1g0361741 Rosa chinensis HOM05D007869 ORTHO05D009962 3.4e-106 389.0 304 61.5
FAN06G2096 Fragaria x ananassa HOM05D007869 ORTHO05D009962 4.1e-104 382.1 302 59.9
FAN10G0101 Fragaria x ananassa HOM05D007869 ORTHO05D009962 5.4e-104 381.7 302 59.9
VMungo0251G2255 Vigna mungo HOM05D007869 ORTHO05D009962 1.7e-102 376.7 303 58.4
Cpa.g.sc57.67 Carica papaya HOM05D007869 ORTHO05D009962 6.6e-102 374.8 305 60.0
Glyma.09G283900 Glycine max HOM05D007869 ORTHO05D009962 1.5e-101 373.6 304 59.9
FAN03G1443 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.9e-101 373.2 302 58.9
FAN03G2169 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.9e-101 373.2 302 58.9
TAR374G1227 Trochodendron aralioides HOM05D007869 ORTHO05D009962 2.5e-101 372.9 308 58.1
Glyma.20G001800 Glycine max HOM05D007869 ORTHO05D009962 4.3e-101 372.1 304 59.2
Lalb_Chr17g0337801 Lupinus albus HOM05D007869 ORTHO05D009962 1.2e-100 370.5 313 56.5
Phvul.003G003700 Phaseolus vulgaris HOM05D007869 ORTHO05D009962 2.8e-100 369.4 304 59.5
FAN06G3475 Fragaria x ananassa HOM05D007869 ORTHO05D009962 8.0e-100 367.9 293 60.1
TPR.G29782 Trifolium pratense HOM05D007869 ORTHO05D009962 6.8e-99 364.8 317 56.5
Lj2g0022280 Lotus japonicus HOM05D007869 ORTHO05D009962 5.7e-98 361.7 310 57.7
Medtr1g038260 Medicago truncatula HOM05D007869 ORTHO05D009962 5.7e-98 361.7 304 58.6
Lalb_Chr04g0258981 Lupinus albus HOM05D007869 ORTHO05D009962 8.3e-97 357.8 297 56.9
Nn3g18755 Nelumbo nucifera HOM05D007869 ORTHO05D009962 9.2e-96 354.4 293 59.4
Psat6g099760 Pisum sativum HOM05D007869 ORTHO05D009962 5.6e-93 345.1 285 57.9
THA.LOC104825914 Tarenaya hassleriana HOM05D007869 ORTHO05D009962 1.1e-88 330.9 287 56.4
FAN01G2503 Fragaria x ananassa HOM05D007869 ORTHO05D009962 2.4e-88 329.7 253 61.7
Sc01g0002100 Simmondsia chinensis HOM05D007869 ORTHO05D009962 1.6e-87 327.0 281 53.7
EL10Ac1g00161 Beta vulgaris HOM05D007869 ORTHO05D009962 6.0e-87 325.1 306 55.2
FAN10G1242 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.0e-86 324.3 255 60.4
Ah.05g178800 Amaranthus hybridus HOM05D007869 ORTHO05D009962 5.0e-86 322.0 314 54.1
A10p01030 Brassica napus HOM05D007869 ORTHO05D009962 3.3e-85 319.3 301 51.5
BolC5t28887H Brassica oleracea HOM05D007869 ORTHO05D009962 4.3e-85 318.9 294 52.4
BcaC05g24607 Brassica carinata HOM05D007869 ORTHO05D009962 1.2e-84 317.4 286 53.1
BraA10t42381Z Brassica rapa HOM05D007869 ORTHO05D009962 1.2e-84 317.4 295 52.5
C05p01060 Brassica napus HOM05D007869 ORTHO05D009962 4.7e-84 315.5 294 51.7
Sp1g01350 Schrenkiella parvula HOM05D007869 ORTHO05D009962 1.1e-83 314.3 294 53.1
Thhalv10009953m.g Eutrema salsugineum HOM05D007869 ORTHO05D009962 1.2e-82 310.8 288 52.8
CsaV3_6G008420 Cucumis sativus L. HOM05D007869 ORTHO05D009962 4.4e-82 308.9 288 52.4
AUR62023523 Chenopodium quinoa HOM05D007869 ORTHO05D009962 3.7e-81 305.8 291 53.6
CARHR001570 Cardamine hirsuta HOM05D007869 ORTHO05D009962 6.4e-81 305.1 292 52.1
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 1.9e-80 303.5 277 53.8
AUR62004577 Chenopodium quinoa HOM05D007869 ORTHO05D009962 4.1e-80 302.4 291 52.9
Carub.0001s0129 Capsella rubella HOM05D007869 ORTHO05D009962 7.1e-80 301.6 299 48.5
Actinidia28076 Actinidia chinensis HOM05D007869 ORTHO05D009962 1.6e-79 300.4 216 69.0
Aa31LG1G10230 Aethionema arabicum HOM05D007869 ORTHO05D009962 4.6e-79 298.9 304 49.0
MBI04_g38990_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 1.0e-78 297.7 297 54.2
arahy.Tifrunner.gnm1.ann1.WBP5Q2 Arachis hypogaea HOM05D007869 ORTHO05D009962 1.5e-77 293.9 293 52.2
arahy.Tifrunner.gnm1.ann1.2P25JP Arachis hypogaea HOM05D007869 ORTHO05D009962 2.8e-76 289.7 267 55.4
AT2G41610 Arabidopsis thaliana HOM05D007869 ORTHO05D009962 6.2e-76 288.5 292 48.6
AL4G39680 Arabidopsis lyrata HOM05D007869 ORTHO05D009962 3.4e-74 282.7 292 48.3
CSS0017560 Camellia sinensis var. sinensis HOM05D007869 ORTHO05D009962 3.4e-74 282.7 216 66.7
MELO3C022297.2 Cucumis melo HOM05D007869 ORTHO05D009962 9.9e-74 281.2 287 49.5
Gohir.D08G144000 Gossypium hirsutum HOM05D007869 ORTHO05D009962 1.9e-72 276.9 196 71.4
Gorai.004G148700 Gossypium raimondii HOM05D007869 ORTHO05D009962 2.4e-72 276.6 196 71.4
Gohir.A08G122700 Gossypium hirsutum HOM05D007869 ORTHO05D009962 3.2e-72 276.2 196 71.4
Sed0016589 Sechium edule HOM05D007869 ORTHO05D009962 4.1e-72 275.8 273 51.3
Medtr1g038290 Medicago truncatula HOM05D007869 ORTHO05D009962 1.2e-71 274.2 297 48.5
HPP92_007374 Vanilla planifolia HOM05D007869 ORTHO05D009962 1.7e-70 270.4 285 50.2
PSO384G3553 Papaver somniferum HOM05D007869 ORTHO05D009962 3.0e-70 269.6 341 46.0
FvH4_7g18090 Fragaria vesca HOM05D007869 ORTHO05D009962 1.9e-69 266.9 224 57.6
ATR0579G134 Amborella trichopoda HOM05D007869 ORTHO05D009962 1.2e-68 264.2 309 46.3
PSO135G1025 Papaver somniferum HOM05D007869 ORTHO05D009962 2.2e-65 253.4 312 46.5
Zm00001eb398460 Zea mays HOM05D007869 ORTHO05D009962 8.4e-65 251.5 279 48.0
Lju170C22T1 Lonicera japonica HOM05D007869 ORTHO05D009962 1.1e-64 251.1 216 59.3
Os03g0253600 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 4.2e-64 249.2 276 48.2
Zm00001eb010960 Zea mays HOM05D007869 ORTHO05D009962 1.6e-63 247.3 276 48.2
Os10g0200700 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 1.1e-61 241.1 248 50.4
Rhsim01G0181500 Rhododendron simsii HOM05D007869 ORTHO05D009962 3.6e-60 236.1 190 62.6
MBI04_g27772_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 1.2e-58 231.1 228 55.3
FvH4_7g18120 Fragaria vesca HOM05D007869 ORTHO05D009962 5.6e-53 212.2 154 66.9
Dinv32655 Davidia involucrata HOM05D007869 ORTHO05D009962 1.4e-43 181.0 143 64.3
Duzib133G0538 Durio zibethinus HOM05D007869 ORTHO05D009962 1.5e-26 124.4 194 38.7
SEGI_25376 Sequoiadendron giganteum HOM05D007869 ORTHO05D009962 2.8e-12 77.0 149 34.9


User provided reference genes

Program Settings