Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G162800 Manihot esculenta HOM05D006471 ORTHO05D008157 3.2e-220 768.1 378 100.0
Ciclev10031833m.g Citrus clementina HOM05D006471 ORTHO05D008157 7.3e-148 527.7 379 69.4
Atru.chr11.1240 Acer truncatum HOM05D006471 ORTHO05D008157 4.1e-143 511.9 375 68.0
Thecc.02G154800 Theobroma cacao HOM05D006471 ORTHO05D008157 5.1e-141 505.0 376 68.6
Potri.007G075500 Populus trichocarpa HOM05D006471 ORTHO05D008157 4.7e-139 498.4 385 67.3
TWI74G1585 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 3.1e-138 495.7 386 67.4
Cpa.g.sc60.91 Carica papaya HOM05D006471 ORTHO05D008157 3.8e-136 488.8 361 70.6
COL.COLO4_33107 Corchorus olitorius HOM05D006471 ORTHO05D008157 3.2e-135 485.7 375 65.9
Duzib132G0448 Durio zibethinus HOM05D006471 ORTHO05D008157 2.3e-133 479.6 378 64.0
Gorai.012G135400 Gossypium raimondii HOM05D006471 ORTHO05D008157 5.6e-132 474.9 378 65.6
TWI77G0721 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 7.3e-132 474.6 387 65.4
Gohir.A04G109424 Gossypium hirsutum HOM05D006471 ORTHO05D008157 1.2e-131 473.8 378 65.9
Gohir.D04G148900 Gossypium hirsutum HOM05D006471 ORTHO05D008157 1.2e-131 473.8 378 65.3
CARHR204730 Cardamine hirsuta HOM05D006471 ORTHO05D008157 2.4e-130 469.5 377 63.1
AL6G18780 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 1.2e-129 467.2 376 63.3
Thhalv10013886m.g Eutrema salsugineum HOM05D006471 ORTHO05D008157 1.5e-129 466.8 376 63.3
Haze_11788 Corylus avellana HOM05D006471 ORTHO05D008157 2.2e-128 463.0 371 62.3
Carub.0006s0724 Capsella rubella HOM05D006471 ORTHO05D008157 8.4e-128 461.1 375 62.7
AT5G08340 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 2.4e-127 459.5 376 62.0
CiPaw.05G172000 Carya illinoinensis HOM05D006471 ORTHO05D008157 2.4e-127 459.5 379 62.5
BcaB01g05611 Brassica carinata HOM05D006471 ORTHO05D008157 3.2e-127 459.1 377 62.9
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 1.2e-126 457.2 376 61.4
Sp6g34600 Schrenkiella parvula HOM05D006471 ORTHO05D008157 2.1e-126 456.4 375 62.4
Cfa008776 Carpinus fangiana HOM05D006471 ORTHO05D008157 2.7e-126 456.1 371 62.0
Dinv17647 Davidia involucrata HOM05D000200 ORTHO05D001546 1.3e-125 453.8 355 65.6
C03p04260 Brassica napus HOM05D006471 ORTHO05D008157 1.7e-125 453.4 375 62.7
BolC3t12958H Brassica oleracea HOM05D006471 ORTHO05D008157 1.7e-125 453.4 375 62.7
BraA03t09725Z Brassica rapa HOM05D006471 ORTHO05D008157 8.7e-125 451.1 375 62.9
CSS0032634 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 2.5e-124 449.5 373 63.3
CSS0035224 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 2.1e-123 446.4 373 62.7
A03p03780 Brassica napus HOM05D006471 ORTHO05D008157 6.2e-123 444.9 375 62.4
CANSAT78G1799 Cannabis sativa HOM05D006471 ORTHO05D008157 1.5e-121 440.3 375 61.1
Duzib248G0471 Durio zibethinus HOM05D000200 ORTHO05D001546 9.9e-121 437.6 290 71.7
Glyma.10G286400 Glycine max HOM05D006471 ORTHO05D008157 2.2e-120 436.4 386 59.8
Sabra07G0063800 Salix brachista HOM05D006471 ORTHO05D008157 2.9e-120 436.0 292 72.6
Cfa014781 Carpinus fangiana HOM05D006857 ORTHO05D008679 4.9e-120 435.3 355 63.4
Eucgr.G02586 Eucalyptus grandis HOM05D006471 ORTHO05D008157 8.4e-120 434.5 377 60.7
Phvul.007G014500 Phaseolus vulgaris HOM05D006471 ORTHO05D008157 1.9e-119 433.3 381 60.1
TAR628G0373 Trochodendron aralioides HOM05D006471 ORTHO05D008157 1.9e-119 433.3 372 61.8
RcHm_v2.0_Chr4g0446941 Rosa chinensis HOM05D006471 ORTHO05D008157 3.2e-119 432.6 383 60.3
THA.LOC104818378 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 9.3e-119 431.0 378 60.1
TPR.G4059 Trifolium pratense HOM05D006471 ORTHO05D008157 1.2e-118 430.6 373 61.1
Lj5g0013377 Lotus japonicus HOM05D006471 ORTHO05D008157 6.0e-118 428.3 385 59.2
Actinidia04343 Actinidia chinensis HOM05D006471 ORTHO05D008157 7.9e-118 427.9 311 68.8
CsaV3_5G029010 Cucumis sativus L. HOM05D006471 ORTHO05D008157 2.3e-117 426.4 372 59.9
VMungo0720G2382 Vigna mungo HOM05D006471 ORTHO05D008157 2.3e-117 426.4 377 59.2
Hma1.2p1_0044F.1_g026290 Hydrangea macrophylla HOM05D006471 ORTHO05D008157 5.1e-117 425.2 379 60.7
PGR142G1667 Punica granatum HOM05D006471 ORTHO05D008157 1.1e-116 424.1 378 61.9
THA.LOC104800739 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 1.5e-116 423.7 381 59.1
BcaB01g05607 Brassica carinata HOM05D006471 ORTHO05D008157 2.5e-116 422.9 312 66.7
FvH4_4g37140 Fragaria vesca HOM05D006471 ORTHO05D008157 1.6e-115 420.2 385 61.3
Psat6g234000 Pisum sativum HOM05D006471 ORTHO05D008157 2.8e-115 419.5 373 59.2
ClCG02G014150 Citrullus lanatus HOM05D006471 ORTHO05D008157 2.2e-112 409.8 416 54.1
Medtr1g114560 Medicago truncatula HOM05D006471 ORTHO05D008157 2.9e-112 409.5 371 60.4
PSO782G0560 Papaver somniferum HOM05D006471 ORTHO05D008157 2.9e-112 409.5 370 58.1
AT5G23330 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 6.4e-112 408.3 373 56.6
MBI06_g44273_MAGBIO Magnolia biondii HOM05D006471 ORTHO05D008157 1.9e-111 406.8 319 64.9
PSO170G1614 Papaver somniferum HOM05D006471 ORTHO05D008157 4.2e-111 405.6 368 58.2
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 5.5e-111 405.2 376 58.8
MD16G1004200 Malus domestica HOM05D006471 ORTHO05D008157 1.6e-110 403.7 405 56.5
AUR62017731 Chenopodium quinoa HOM05D006471 ORTHO05D008157 2.1e-110 403.3 306 65.4
DCAR_002605 Daucus carota HOM05D000200 ORTHO05D001546 2.1e-110 403.3 296 65.9
Sopen04g004170 Solanum pennellii HOM05D006471 ORTHO05D008157 3.5e-110 402.5 346 59.0
PGSC0003DMG400011512 Solanum tuberosum HOM05D006471 ORTHO05D008157 1.8e-109 400.2 346 59.0
GSVIVG01034416001 Vitis vinifera HOM05D006471 ORTHO05D008157 1.8e-109 400.2 315 64.1
AUR62032950 Chenopodium quinoa HOM05D006471 ORTHO05D008157 8.7e-109 397.9 292 67.1
Ca_11258_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 1.1e-108 397.5 318 63.8
Rhsim12G0193800 Rhododendron simsii HOM05D006471 ORTHO05D008157 1.1e-108 397.5 291 67.7
Solyc04g008990.3 Solanum lycopersicum HOM05D006471 ORTHO05D008157 1.1e-108 397.5 335 60.3
Sed0003381 Sechium edule HOM05D006471 ORTHO05D008157 2.5e-108 396.4 304 65.1
Nitab4.5_0005997g0050 Nicotiana tabacum HOM05D006471 ORTHO05D008157 2.1e-107 393.3 363 59.5
AL6G34590 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 3.7e-107 392.5 375 55.7
EL10Ac9g22981 Beta vulgaris HOM05D006471 ORTHO05D008157 1.1e-106 391.0 378 56.6
Nitab4.5_0004979g0070 Nicotiana tabacum HOM05D006471 ORTHO05D008157 1.4e-106 390.6 356 59.3
CAN.G274.15 Capsicum annuum HOM05D006471 ORTHO05D008157 9.0e-106 387.9 392 54.1
Sc10g0006980 Simmondsia chinensis HOM05D006471 ORTHO05D008157 1.2e-105 387.5 290 66.2
Ah.16g106450 Amaranthus hybridus HOM05D000154 ORTHO05D000092 5.8e-105 385.2 301 65.4
MSTRG.428 Avicennia marina HOM05D006471 ORTHO05D008157 7.6e-105 384.8 371 55.0
Lalb_Chr06g0163931 Lupinus albus HOM05D006471 ORTHO05D008157 1.0e-104 384.4 305 63.0
Peaxi162Scf00681g00221 Petunia axillaris HOM05D006471 ORTHO05D008157 1.3e-104 384.0 383 55.9
MSTRG.8091 Avicennia marina HOM05D006471 ORTHO05D008157 6.5e-104 381.7 305 64.9
MELO3C011756.2 Cucumis melo HOM05D006471 ORTHO05D008157 6.5e-104 381.7 482 46.7
Lj3A846G60 Lonicera japonica HOM05D006471 ORTHO05D008157 1.1e-103 380.9 272 68.4
SalBow2G1748 Salvia bowleyana HOM05D006471 ORTHO05D008157 2.5e-103 379.8 312 61.2
Nn2g12513 Nelumbo nucifera HOM05D006471 ORTHO05D008157 2.7e-102 376.3 305 62.0
CARHR190210 Cardamine hirsuta HOM05D006471 ORTHO05D008157 3.5e-102 375.9 293 64.8
Aqoxy2G00030 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 1.0e-101 374.4 291 65.3
vmacro16923 Vaccinium macrocarpon HOM05D006471 ORTHO05D008157 2.3e-101 373.2 277 66.4
Aqoxy2G01235 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 1.5e-100 370.5 292 64.4
SGA_v2.0_scaffold92G28263 Striga asiatica HOM05D006471 ORTHO05D008157 9.6e-100 367.9 317 60.3
HanXRQChr03g0076951 Helianthus annuus HOM05D006471 ORTHO05D008157 2.1e-99 366.7 290 63.4
Lsat_1_v5_gn_0_15460 Lactuca sativa HOM05D006471 ORTHO05D008157 2.1e-99 366.7 291 64.3
Nn8g40194 Nelumbo nucifera HOM05D006471 ORTHO05D008157 2.8e-99 366.3 276 66.3
Migut.L00869 Erythranthe guttata HOM05D006471 ORTHO05D008157 1.1e-98 364.4 300 63.0
Oeu006329.1 Olea europaea HOM05D006471 ORTHO05D008157 2.6e-97 359.8 396 52.8
Cc00_g09970 Coffea canephora HOM05D006471 ORTHO05D008157 8.5e-96 354.8 296 62.5
CDE02G4670 Ceratophyllum demersum HOM05D006471 ORTHO05D008157 1.9e-95 353.6 378 50.5
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 2.1e-94 350.1 315 57.5
FAN17G0671 Fragaria x ananassa HOM05D006471 ORTHO05D008157 1.8e-93 347.1 382 53.1
ECA240G3241 Erigeron canadensis HOM05D006471 ORTHO05D008157 2.5e-92 343.2 247 69.2
arahy.Tifrunner.gnm1.ann1.V4ETXF Arachis hypogaea HOM05D006471 ORTHO05D008157 2.8e-91 339.7 341 55.1
FAN07G1501 Fragaria x ananassa HOM05D002605 ORTHO05D002842 4.1e-90 335.9 370 53.0
ATR0665G473 Amborella trichopoda HOM05D006471 ORTHO05D008157 6.9e-90 335.1 276 63.0
Prupe.1G349200 Prunus persica HOM05D006471 ORTHO05D008157 5.9e-89 332.0 238 68.5
SGA_v2.0_scaffold42G16129 Striga asiatica HOM05D006471 ORTHO05D008157 5.9e-89 332.0 415 48.2
Os03g0801700 Oryza sativa ssp. japonica HOM05D006471 ORTHO05D008157 3.8e-88 329.3 275 59.3
unitig_749.g13340 Utricularia gibba HOM05D006471 ORTHO05D008157 1.4e-87 327.4 329 53.2
Zm00001eb061200 Zea mays HOM05D006471 ORTHO05D008157 1.4e-85 320.9 276 59.1
HPP92_017784 Vanilla planifolia HOM05D006471 ORTHO05D008157 2.0e-84 317.0 279 59.9
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 9.7e-84 314.7 242 65.7
QL08p056974 Quercus lobata HOM05D006471 ORTHO05D008157 3.1e-82 309.7 227 64.8
MD13G1003200 Malus domestica HOM05D006471 ORTHO05D008157 2.6e-76 290.0 196 71.9
Carub.0006s2111 Capsella rubella HOM05D006471 ORTHO05D008157 2.6e-73 280.0 232 62.1
SEGI_40912 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 1.9e-71 273.9 286 53.1
Pp3c5_28930 Physcomitrium patens HOM05D006471 ORTHO05D008157 4.2e-71 272.7 275 51.3
SMO141G0020 Selaginella moellendorffii HOM05D006471 ORTHO05D008157 2.9e-64 250.0 190 62.6
Glyma.20G102800 Glycine max HOM05D006471 ORTHO05D008157 3.8e-64 249.6 311 45.7
Mapoly0019s0104 Marchantia polymorpha HOM05D006471 ORTHO05D008157 3.2e-63 246.5 252 50.8
Pp3c14_5150 Physcomitrium patens HOM05D006471 ORTHO05D008157 3.2e-63 246.5 299 47.2
AagrBONN_evm.TU.Sc2ySwM_362.1554 Anthoceros agrestis HOM05D006471 ORTHO05D008157 1.5e-44 184.5 149 58.4
FAN12G2193 Fragaria x ananassa HOM05D006471 ORTHO05D008157 7.5e-44 182.2 141 68.1
MCO07G267 Micromonas commoda HOM05D006471 ORTHO05D008157 1.3e-40 171.4 263 41.4
Sc06g0004050 Simmondsia chinensis HOM05D006471 ORTHO05D008157 7.5e-36 155.6 143 59.4
Carub.0006s2110 Capsella rubella HOM05D006471 ORTHO05D008157 1.6e-25 121.3 96 62.5
QL08p056966 Quercus lobata HOM05D006471 ORTHO05D008157 1.0e-24 118.6 93 62.4
Cre13.g607600 Chlamydomonas reinhardtii HOM05D006471 ORTHO05D008157 1.7e-24 117.9 337 30.0
BolC9t53696H Brassica oleracea HOM05D006471 ORTHO05D008157 2.4e-13 80.9 80 50.0
arahy.Tifrunner.gnm1.ann1.SQAN1F Arachis hypogaea HOM05D006471 ORTHO05D008157 6.4e-11 72.8 47 70.2


User provided reference genes

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