Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G161600 Manihot esculenta HOM05D004203 ORTHO05D004830 7.9e-252 873.2 422 100.0
Potri.007G001200 Populus trichocarpa HOM05D004203 ORTHO05D004830 3.5e-207 724.9 418 81.1
TAR623G0552 Trochodendron aralioides HOM05D004203 ORTHO05D004830 3.8e-206 721.5 425 81.4
COL.COLO4_33135 Corchorus olitorius HOM05D004203 ORTHO05D004830 2.1e-204 715.7 417 80.6
Sabra07G0000900 Salix brachista HOM05D004203 ORTHO05D004830 6.1e-204 714.1 413 79.4
Duzib248G1608 Durio zibethinus HOM05D004203 ORTHO05D004830 2.3e-203 712.2 421 79.8
Atru.chr11.55 Acer truncatum HOM05D004203 ORTHO05D004830 3.0e-203 711.8 420 77.9
CiPaw.15G000900 Carya illinoinensis HOM05D004203 ORTHO05D004830 4.0e-203 711.4 421 78.1
Thecc.02G153000 Theobroma cacao HOM05D004203 ORTHO05D004830 5.2e-203 711.1 421 79.8
Cpa.g.sc257.7 Carica papaya HOM05D004203 ORTHO05D004830 5.7e-202 707.6 419 79.0
Ciclev10015311m.g Citrus clementina HOM05D004203 ORTHO05D004830 1.8e-200 702.6 431 76.8
QL01p000433 Quercus lobata HOM05D004203 ORTHO05D004830 5.4e-200 701.0 419 77.8
Haze_17403 Corylus avellana HOM05D004203 ORTHO05D004830 7.8e-199 697.2 419 79.2
TWI74G0727 Tripterygium wilfordii HOM05D004203 ORTHO05D004830 1.3e-198 696.4 422 76.5
Gohir.D13G059200 Gossypium hirsutum HOM05D004203 ORTHO05D004830 3.8e-198 694.9 422 76.8
Cfa018675 Carpinus fangiana HOM05D004203 ORTHO05D004830 8.6e-198 693.7 415 79.5
Atru.chr11.58 Acer truncatum HOM05D004203 ORTHO05D004830 1.5e-197 693.0 412 77.2
DCAR_026874 Daucus carota HOM05D004203 ORTHO05D004830 4.3e-197 691.4 424 75.9
Gorai.013G067000 Gossypium raimondii HOM05D004203 ORTHO05D004830 1.6e-196 689.5 422 76.5
Aqoxy3G04325 Aquilegia oxysepala HOM05D004203 ORTHO05D004830 2.1e-196 689.1 430 76.3
Gohir.A13G062700 Gossypium hirsutum HOM05D004203 ORTHO05D004830 2.8e-196 688.7 422 76.3
Actinidia13679 Actinidia chinensis HOM05D004203 ORTHO05D004830 1.8e-195 686.0 425 75.8
Hma1.2p1_0513F.1_g169570 Hydrangea macrophylla HOM05D004203 ORTHO05D004830 1.5e-194 682.9 420 76.2
PSO063G7450 Papaver somniferum HOM05D004203 ORTHO05D004830 2.6e-194 682.2 422 75.4
Peaxi162Scf00603g00031 Petunia axillaris HOM05D004203 ORTHO05D004830 4.4e-194 681.4 412 76.7
PSO782G5227 Papaver somniferum HOM05D004203 ORTHO05D004830 2.9e-193 678.7 422 74.6
EL10Ac9g23011 Beta vulgaris HOM05D004203 ORTHO05D004830 3.2e-192 675.2 418 74.6
Oeu027932.1 Olea europaea HOM05D004203 ORTHO05D004830 1.2e-191 673.3 428 74.1
Duzib132G1212 Durio zibethinus HOM05D004203 ORTHO05D004830 7.8e-191 670.6 422 73.2
Dinv37943 Davidia involucrata HOM05D004203 ORTHO05D004830 8.6e-190 667.2 420 77.4
CSS0042488 Camellia sinensis var. sinensis HOM05D004203 ORTHO05D004830 1.1e-189 666.8 423 75.9
CANSAT78G1232 Cannabis sativa HOM05D004203 ORTHO05D004830 5.6e-189 664.5 418 74.4
Cc11_g04600 Coffea canephora HOM05D004203 ORTHO05D004830 5.6e-189 664.5 423 73.0
Nitab4.5_0001803g0070 Nicotiana tabacum HOM05D004203 ORTHO05D004830 1.6e-188 662.9 421 74.3
Lalb_Chr17g0337651 Lupinus albus HOM05D004203 ORTHO05D004830 2.1e-188 662.5 419 75.2
AUR62032903 Chenopodium quinoa HOM05D004203 ORTHO05D004830 2.8e-188 662.1 422 72.5
MD13G1001600 Malus domestica HOM05D004203 ORTHO05D004830 3.1e-187 658.7 449 71.3
Nitab4.5_0001018g0120 Nicotiana tabacum HOM05D004203 ORTHO05D004830 3.1e-187 658.7 421 73.9
VMungo0900G0001 Vigna mungo HOM05D004203 ORTHO05D004830 8.9e-187 657.1 413 75.1
PGSC0003DMG400000979 Solanum tuberosum HOM05D004203 ORTHO05D004830 2.0e-186 656.0 423 72.3
THA.LOC104826512 Tarenaya hassleriana HOM05D004203 ORTHO05D004830 3.4e-186 655.2 412 72.8
ClCG01G007960 Citrullus lanatus HOM05D004203 ORTHO05D004830 9.8e-186 653.7 420 72.9
Aa31LG8G6770 Aethionema arabicum HOM05D004203 ORTHO05D004830 2.2e-185 652.5 415 73.3
Sopen11g002260 Solanum pennellii HOM05D004203 ORTHO05D004830 2.2e-185 652.5 412 73.8
Cc11_g04630 Coffea canephora HOM05D004203 ORTHO05D004830 3.7e-185 651.7 427 71.7
Glyma.09G285700 Glycine max HOM05D004203 ORTHO05D004830 3.7e-185 651.7 419 74.9
MBI06_g12559_MAGBIO Magnolia biondii HOM05D004203 ORTHO05D004830 1.1e-184 650.2 422 74.4
Prupe.1G350900 Prunus persica HOM05D004203 ORTHO05D004830 9.2e-184 647.1 444 71.2
Carub.0003s1989 Capsella rubella HOM05D004203 ORTHO05D004830 1.6e-183 646.4 424 71.2
Thhalv10020793m.g Eutrema salsugineum HOM05D004203 ORTHO05D004830 1.6e-183 646.4 424 71.7
AT3G19990 Arabidopsis thaliana HOM05D004203 ORTHO05D004830 6.0e-183 644.4 424 71.5
Medtr0365s0010 Medicago truncatula HOM05D004203 ORTHO05D004830 6.0e-183 644.4 425 71.5
CAN.G143.62 Capsicum annuum HOM05D004203 ORTHO05D004830 3.0e-182 642.1 423 71.4
Eucgr.G02607 Eucalyptus grandis HOM05D004203 ORTHO05D004830 3.0e-182 642.1 419 70.9
AL3G33640 Arabidopsis lyrata HOM05D004203 ORTHO05D004830 6.6e-182 641.0 424 71.5
AUR62017749 Chenopodium quinoa HOM05D004203 ORTHO05D004830 1.1e-181 640.2 408 71.3
CARHR095520 Cardamine hirsuta HOM05D004203 ORTHO05D004830 1.5e-181 639.8 414 72.5
PGR142G4147 Punica granatum HOM05D004203 ORTHO05D004830 3.3e-181 638.6 425 72.5
Sp3g18010 Schrenkiella parvula HOM05D004203 ORTHO05D004830 4.3e-181 638.3 424 71.2
BcaB04g20673 Brassica carinata HOM05D004203 ORTHO05D004830 5.6e-181 637.9 421 72.2
Lj2g0024262 Lotus japonicus HOM05D004203 ORTHO05D004830 5.6e-181 637.9 430 72.1
C01p44100 Brassica napus HOM05D004203 ORTHO05D004830 6.2e-180 634.4 425 71.3
BraA01t03555Z Brassica rapa HOM05D004203 ORTHO05D004830 8.1e-180 634.0 421 71.7
Phvul.003G000800 Phaseolus vulgaris HOM05D004203 ORTHO05D004830 8.1e-180 634.0 413 72.4
Hund24393 Selenicereus undatus HOM05D004203 ORTHO05D004830 8.1e-180 634.0 420 69.8
BcaC09g48955 Brassica carinata HOM05D004203 ORTHO05D004830 1.4e-179 633.3 425 71.1
BraA05t21796Z Brassica rapa HOM05D004203 ORTHO05D004830 1.4e-179 633.3 414 71.3
BcaB06g26068 Brassica carinata HOM05D004203 ORTHO05D004830 1.8e-179 632.9 414 71.0
CsaV3_5G021930 Cucumis sativus L. HOM05D004203 ORTHO05D004830 1.8e-179 632.9 412 72.3
Eucgr.G02598 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.8e-179 632.9 418 70.1
MELO3C005084.2 Cucumis melo HOM05D004203 ORTHO05D004830 4.0e-179 631.7 412 71.8
BolC1t04373H Brassica oleracea HOM05D004203 ORTHO05D004830 5.2e-179 631.3 425 71.1
A05p29130 Brassica napus HOM05D004203 ORTHO05D004830 8.9e-179 630.6 414 70.8
Eucgr.L03404 Eucalyptus grandis HOM05D004203 ORTHO05D004830 8.9e-179 630.6 418 69.9
Rhsim02G0210900 Rhododendron simsii HOM05D004203 ORTHO05D004830 2.0e-178 629.4 429 69.5
ClCG01G007980 Citrullus lanatus HOM05D004203 ORTHO05D004830 5.8e-178 627.9 420 69.8
Lsat_1_v5_gn_3_35621 Lactuca sativa HOM05D004203 ORTHO05D004830 7.5e-178 627.5 422 70.9
Ca_12360_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 1.7e-177 626.3 418 70.8
Ca_12363_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 1.7e-177 626.3 418 70.8
Psat6g100840 Pisum sativum HOM05D004203 ORTHO05D004830 3.7e-177 625.2 424 69.6
A01p34680 Brassica napus HOM05D004203 ORTHO05D004830 1.1e-176 623.6 421 70.3
RcHm_v2.0_Chr4g0447121 Rosa chinensis HOM05D004203 ORTHO05D004830 4.1e-176 621.7 410 72.0
BcaC05g28375 Brassica carinata HOM05D004203 ORTHO05D004830 4.6e-175 618.2 414 70.3
BolC5t33177H Brassica oleracea HOM05D004203 ORTHO05D004830 4.6e-175 618.2 414 70.3
SHI10741 Sapria himalayana HOM05D004203 ORTHO05D004830 1.0e-174 617.1 404 72.3
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 5.1e-174 614.8 411 69.6
Gohir.D13G059100 Gossypium hirsutum HOM05D004203 ORTHO05D004830 8.6e-174 614.0 422 67.1
HanXRQChr15g0472171 Helianthus annuus HOM05D004203 ORTHO05D004830 1.5e-173 613.2 420 68.3
Sed0024681 Sechium edule HOM05D004203 ORTHO05D004830 3.3e-173 612.1 423 68.8
Gorai.013G066900 Gossypium raimondii HOM05D004203 ORTHO05D004830 1.2e-172 610.1 422 66.8
FvH4_4g37300 Fragaria vesca HOM05D004203 ORTHO05D004830 1.6e-172 609.8 410 70.7
SalBow2G2162 Salvia bowleyana HOM05D004203 ORTHO05D004830 4.7e-172 608.2 412 69.7
MSTRG.8095 Avicennia marina HOM05D004203 ORTHO05D004830 1.8e-171 606.3 424 68.9
Migut.O00611 Erythranthe guttata HOM05D004203 ORTHO05D004830 1.2e-170 603.6 414 68.6
Migut.L00789 Erythranthe guttata HOM05D004203 ORTHO05D004830 2.0e-170 602.8 415 68.2
FAN17G0196 Fragaria x ananassa HOM05D004203 ORTHO05D004830 5.8e-170 601.3 410 69.8
ECA246G1911 Erigeron canadensis HOM05D004203 ORTHO05D004830 2.2e-169 599.4 419 70.4
QL01p000454 Quercus lobata HOM05D004203 ORTHO05D004830 2.4e-168 595.9 421 67.9
ECA246G0515 Erigeron canadensis HOM05D004203 ORTHO05D004830 2.7e-167 592.4 420 68.3
Eucgr.G02596 Eucalyptus grandis HOM05D004203 ORTHO05D004830 7.8e-167 590.9 418 67.5
Lsat_1_v5_gn_4_27720 Lactuca sativa HOM05D004203 ORTHO05D004830 6.6e-166 587.8 423 64.1
Eucgr.G02594 Eucalyptus grandis HOM05D004203 ORTHO05D004830 3.4e-162 575.5 420 65.2
ECA234G3608 Erigeron canadensis HOM05D004203 ORTHO05D004830 2.9e-161 572.4 421 62.9
C05p44530 Brassica napus HOM05D004203 ORTHO05D004830 1.0e-158 563.9 414 65.5
unitig_749.g13343 Utricularia gibba HOM05D004203 ORTHO05D004830 3.9e-158 562.0 423 63.8
QL01p000540 Quercus lobata HOM05D004203 ORTHO05D004830 7.3e-157 557.8 353 74.5
HanXRQChr17g0559591 Helianthus annuus HOM05D004203 ORTHO05D004830 3.1e-155 552.4 429 58.5
HPP92_022176 Vanilla planifolia HOM05D004203 ORTHO05D004830 1.3e-153 547.0 413 61.5
Lsat_1_v5_gn_8_139521 Lactuca sativa HOM05D004203 ORTHO05D004830 3.8e-153 545.4 430 58.8
Eucgr.G02595 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.4e-152 543.5 421 61.8
HanXRQChr09g0251301 Helianthus annuus HOM05D004203 ORTHO05D004830 1.9e-152 543.1 429 57.1
Os02g0828200 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 2.1e-151 539.7 412 61.2
ATR0124G027 Amborella trichopoda HOM05D004203 ORTHO05D004830 5.1e-150 535.0 418 61.0
SEGI_02027 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.5e-149 533.5 448 58.9
HPP92_005409 Vanilla planifolia HOM05D004203 ORTHO05D004830 1.3e-148 530.4 421 61.8
Zm00001eb259360 Zea mays HOM05D004203 ORTHO05D004830 2.4e-147 526.2 409 59.7
Os02g0828500 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 1.3e-137 493.8 412 56.1
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 5.5e-136 488.4 393 57.3
MD16G1004500 Malus domestica HOM05D004203 ORTHO05D004830 1.3e-134 483.8 404 60.4
TPR.G34239 Trifolium pratense HOM05D004203 ORTHO05D004830 7.2e-128 461.5 308 70.5
AagrBONN_evm.TU.Sc2ySwM_368.1197 Anthoceros agrestis HOM05D004203 ORTHO05D004830 7.9e-127 458.0 430 53.5
Thecc.02G152900 Theobroma cacao HOM05D004203 ORTHO05D004830 2.3e-126 456.4 294 71.4
SMO117G0084 Selaginella moellendorffii HOM05D004203 ORTHO05D004830 1.5e-117 427.2 410 52.4
GSVIVG01034368001 Vitis vinifera HOM05D004203 ORTHO05D004830 3.7e-116 422.5 420 53.1
GSVIVG01034366001 Vitis vinifera HOM05D004203 ORTHO05D004830 3.1e-115 419.5 420 52.1
Mapoly0080s0012 Marchantia polymorpha HOM05D004203 ORTHO05D004830 4.5e-114 415.6 417 49.2
Sc08g0004160 Simmondsia chinensis HOM05D004203 ORTHO05D004830 1.8e-110 403.7 268 68.7
Pp3c17_21640 Physcomitrium patens HOM05D004203 ORTHO05D004830 5.7e-109 398.7 426 46.2
SEGI_01054 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 5.5e-104 382.1 345 52.2
Cre16.g671500 Chlamydomonas reinhardtii HOM05D004203 ORTHO05D004830 2.3e-94 350.1 422 42.4
Prupe.1G351100 Prunus persica HOM05D004203 ORTHO05D004830 8.8e-94 348.2 239 70.7
Medtr0400s0020 Medicago truncatula HOM05D004203 ORTHO05D004830 2.6e-93 346.7 226 73.0
Lj3A845T90 Lonicera japonica HOM05D004203 ORTHO05D004830 2.3e-89 333.6 247 68.8
SEGI_32381 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 6.3e-84 315.5 289 51.6
Lj3C845T9 Lonicera japonica HOM05D004203 ORTHO05D004830 9.9e-61 238.4 154 68.8
Atru.chr11.60 Acer truncatum HOM05D004203 ORTHO05D004830 1.2e-53 214.9 161 62.7
SEGI_16211 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 7.1e-51 205.7 318 38.4
Sc08g0004150 Simmondsia chinensis HOM05D004203 ORTHO05D004830 6.6e-49 199.1 137 64.2
BcaB08g37041 Brassica carinata HOM05D004203 ORTHO05D004830 4.0e-46 189.9 145 63.4
Sc08g0004170 Simmondsia chinensis HOM05D004203 ORTHO05D004830 4.4e-45 186.4 130 62.3
Atru.chr11.61 Acer truncatum HOM05D004203 ORTHO05D004830 1.3e-44 184.9 125 68.0
Solyc11g006360.1 Solanum lycopersicum HOM05D004203 ORTHO05D004830 1.1e-43 181.8 113 69.9
FAN12G3670 Fragaria x ananassa HOM05D004203 ORTHO05D004830 8.1e-39 165.6 159 57.9
SEGI_00877 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 2.4e-38 164.1 211 45.0
BcaB06g27490 Brassica carinata HOM05D004203 ORTHO05D004830 2.9e-36 157.1 158 55.7
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 6.0e-34 149.4 404 26.7
BcaC07g39871 Brassica carinata HOM05D004203 ORTHO05D004830 2.1e-23 114.4 79 70.9
BcaB06g26576 Brassica carinata HOM05D004203 ORTHO05D004830 3.1e-22 110.5 78 64.1
BcaB06g27488 Brassica carinata HOM05D004203 ORTHO05D004830 6.9e-22 109.4 102 56.9
BcaB06g27492 Brassica carinata HOM05D004203 ORTHO05D004830 2.0e-21 107.8 92 62.0
Sc08g0004180 Simmondsia chinensis HOM05D004203 ORTHO05D004830 2.6e-21 107.5 76 65.8
BcaB08g37040 Brassica carinata HOM05D004203 ORTHO05D004830 8.4e-20 102.4 71 67.6
Os03g0251425 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 4.6e-18 96.7 88 50.0
SEGI_08354 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.8e-17 94.7 160 35.0
Sc08g0004140 Simmondsia chinensis HOM05D004203 ORTHO05D004830 2.5e-16 90.9 82 51.2
GSVIVG01034364001 Vitis vinifera HOM05D004203 ORTHO05D004830 7.4e-16 89.4 61 63.9
BcaB06g27494 Brassica carinata HOM05D004203 ORTHO05D004830 1.4e-14 85.1 67 64.2
BcaB06g27495 Brassica carinata HOM05D004203 ORTHO05D004830 6.9e-14 82.8 60 66.7
COL.COLO4_33125 Corchorus olitorius HOM05D004203 ORTHO05D004830 3.4e-13 80.5 45 77.8
BcaC07g38231 Brassica carinata HOM05D004203 ORTHO05D004830 2.7e-10 70.9 58 65.5
MCO08G255 Micromonas commoda HOM05D004203 ORTHO05D004830 1.8e-09 68.2 106 34.9
BcaB06g26577 Brassica carinata HOM05D004203 ORTHO05D004830 3.9e-09 67.0 55 63.6
Pp3c14_4390 Physcomitrium patens HOM05D004203 ORTHO05D004830 3.3e-08 63.9 72 37.5
BcaB05g24942 Brassica carinata HOM05D004203 ORTHO05D004830 7.4e-08 62.8 43 62.8
A05p19690 Brassica napus HOM05D004203 ORTHO05D004830 6.3e-07 59.7 51 62.7
SEGI_22616 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 6.3e-07 59.7 79 35.4
Cpa.g.c45316 Carica papaya HOM05D004203 ORTHO05D004830 1.1e-06 58.9 42 64.3


User provided reference genes

Program Settings