Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G157400 Manihot esculenta HOM05D002974 ORTHO05D002992 2.1e-71 272.3 143 100.0
Manes.11G007000 Manihot esculenta HOM05D002974 ORTHO05D002992 2.6e-45 185.7 141 78.7
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 5.2e-30 134.8 143 58.7
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 4.1e-27 125.2 142 57.0
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 3.9e-25 118.6 145 56.6
Dinv32015 Davidia involucrata HOM05D002974 ORTHO05D002992 3.0e-17 92.4 132 47.7
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 5.0e-17 91.7 138 48.6
Gorai.012G018900 Gossypium raimondii HOM05D002974 ORTHO05D002992 8.6e-17 90.9 138 47.1
Ciclev10002803m.g Citrus clementina HOM05D002974 ORTHO05D002992 1.5e-16 90.1 145 43.4
Gohir.A05G399600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.9e-16 89.7 138 47.1
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 3.3e-16 89.0 132 47.0
Duzib106G1811 Durio zibethinus HOM05D002974 ORTHO05D002992 7.3e-16 87.8 133 46.6
FvH4_7g03520 Fragaria vesca HOM05D002974 ORTHO05D002992 2.8e-15 85.9 64 70.3
FAN06G3677 Fragaria x ananassa HOM05D002974 ORTHO05D002992 2.8e-15 85.9 64 70.3
Gohir.D04G016200 Gossypium hirsutum HOM05D002974 ORTHO05D002992 2.8e-15 85.9 138 45.7
Oeu064130.1 Olea europaea HOM05D002974 ORTHO05D002992 6.2e-15 84.7 139 38.8
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 8.1e-15 84.3 143 43.4
RcHm_v2.0_Chr1g0325821 Rosa chinensis HOM05D002974 ORTHO05D002992 8.1e-15 84.3 122 48.4
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 1.1e-14 84.0 136 44.1
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.8e-14 83.2 65 70.8
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 2.3e-14 82.8 65 70.8
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 2.3e-14 82.8 65 70.8
PGR031G0048 Punica granatum HOM05D002974 ORTHO05D002992 4.0e-14 82.0 169 40.8
TWI15G0153 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 4.0e-14 82.0 139 46.0
Oeu006786.1 Olea europaea HOM05D002974 ORTHO05D002992 6.8e-14 81.3 134 41.8
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 8.9e-14 80.9 114 50.0
COL.COLO4_20695 Corchorus olitorius HOM05D003550 ORTHO05D004336 4.4e-13 78.6 127 48.0
Atru.chr12.1277 Acer truncatum HOM05D002974 ORTHO05D002992 5.8e-13 78.2 134 41.0
Migut.N01854 Erythranthe guttata HOM05D002974 ORTHO05D002992 5.8e-13 78.2 132 36.4
Gohir.A10G187100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 7.5e-13 77.8 136 46.3
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 7.5e-13 77.8 112 50.9
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 7.5e-13 77.8 112 50.9
Oeu053079.1 Olea europaea HOM05D002974 ORTHO05D002992 9.9e-13 77.4 134 40.3
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 2.9e-12 75.9 61 68.9
Gorai.011G217100 Gossypium raimondii HOM05D002974 ORTHO05D002992 4.9e-12 75.1 136 44.9
Dinv44699 Davidia involucrata HOM05D002974 ORTHO05D002992 6.4e-12 74.7 130 45.4
CiPaw.14G008700 Carya illinoinensis HOM05D002974 ORTHO05D002992 8.3e-12 74.3 122 43.4
CANSAT56G2792 Cannabis sativa HOM05D002974 ORTHO05D002992 1.1e-11 73.9 60 65.0
MELO3C012484.2 Cucumis melo HOM05D002974 ORTHO05D002992 1.1e-11 73.9 145 39.3
MSTRG.28034 Avicennia marina HOM05D002974 ORTHO05D002992 3.2e-11 72.4 143 37.1
Gohir.D10G194600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 5.4e-11 71.6 136 44.1
Eucgr.G03218 Eucalyptus grandis HOM05D002974 ORTHO05D002992 9.2e-11 70.9 164 37.2
Solyc01g096510.2 Solanum lycopersicum HOM05D002974 ORTHO05D002992 1.6e-10 70.1 132 35.6
CSS0032574 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 2.1e-10 69.7 130 40.0
CAN.G134.10 Capsicum annuum HOM05D002974 ORTHO05D002992 2.1e-10 69.7 65 55.4
PGSC0003DMG400005401 Solanum tuberosum HOM05D002974 ORTHO05D002992 2.1e-10 69.7 62 56.5
Sopen01g040240 Solanum pennellii HOM05D002974 ORTHO05D002992 3.5e-10 68.9 132 35.6
CsaV3_5G036860 Cucumis sativus L. HOM05D002974 ORTHO05D002992 6.0e-10 68.2 119 42.0
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 1.3e-09 67.0 138 39.1
EL10Ac2g02772 Beta vulgaris HOM05D012416 ORTHO05D002992 1.7e-09 66.6 146 32.9
Nitab4.5_0005808g0010 Nicotiana tabacum HOM05D002974 ORTHO05D002992 1.7e-09 66.6 85 52.9
SGA_v2.0_scaffold43G16289 Striga asiatica HOM05D002974 ORTHO05D002992 2.3e-09 66.2 124 40.3
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 3.0e-09 65.9 130 38.5
MSTRG.5073 Avicennia marina HOM05D002974 ORTHO05D002992 3.9e-09 65.5 111 38.7
ClCG05G026910 Citrullus lanatus HOM05D002974 ORTHO05D002992 3.9e-09 65.5 57 63.2
Potri.016G036600 Populus trichocarpa HOM05D002974 ORTHO05D002992 3.9e-09 65.5 143 36.4
Rhsim07G0068200 Rhododendron simsii HOM05D002974 ORTHO05D002992 5.1e-09 65.1 123 38.2
Sc11g0006360 Simmondsia chinensis HOM05D002974 ORTHO05D002992 5.1e-09 65.1 96 42.7
Sed0000723 Sechium edule HOM05D002974 ORTHO05D002992 6.6e-09 64.7 110 44.5
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 8.6e-09 64.3 129 38.8
AUR62032633 Chenopodium quinoa HOM05D012416 ORTHO05D002992 8.6e-09 64.3 147 34.0
CiPaw.13G015100 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.1e-08 63.9 109 43.1
THA.LOC104820144 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 1.5e-08 63.5 48 70.8
Sed0006618 Sechium edule HOM05D002974 ORTHO05D002992 2.5e-08 62.8 136 38.2
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 2.5e-08 62.8 124 36.3
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 3.3e-08 62.4 131 35.1
Potri.006G038900 Populus trichocarpa HOM05D002974 ORTHO05D002992 3.3e-08 62.4 137 38.7
Sabra16G0038800 Salix brachista HOM05D002974 ORTHO05D002992 3.3e-08 62.4 137 35.0
Nitab4.5_0003481g0110 Nicotiana tabacum HOM05D002974 ORTHO05D002992 4.3e-08 62.0 132 41.7
Oeu011571.1 Olea europaea HOM05D002974 ORTHO05D002992 4.3e-08 62.0 135 37.8
Ca_12961_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 5.6e-08 61.6 122 41.0
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 5.6e-08 61.6 53 66.0
SGA_v2.0_scaffold232G43495 Striga asiatica HOM05D002974 ORTHO05D002992 5.6e-08 61.6 123 37.4
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 5.6e-08 61.6 140 38.6
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 7.3e-08 61.2 152 33.6
THA.LOC109116532 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 7.3e-08 61.2 128 40.6
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 7.3e-08 61.2 120 38.3
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 9.5e-08 60.8 62 56.5
QL04p017793 Quercus lobata HOM05D002974 ORTHO05D002992 9.5e-08 60.8 109 45.0
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 1.2e-07 60.5 143 34.3
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 1.2e-07 60.5 93 43.0
Oeu059346.1 Olea europaea HOM05D002974 ORTHO05D002992 1.2e-07 60.5 141 36.9
SalBow5G5227 Salvia bowleyana HOM05D002974 ORTHO05D002992 1.6e-07 60.1 104 41.3
TWI53G1119 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 1.6e-07 60.1 53 62.3
Peaxi162Scf00082g00006 Petunia axillaris HOM05D002974 ORTHO05D002992 2.1e-07 59.7 48 66.7
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 2.8e-07 59.3 155 36.8
Lj3g0008937 Lotus japonicus HOM05D002974 ORTHO05D002992 3.6e-07 58.9 57 57.9
Psat3g078800 Pisum sativum HOM05D002974 ORTHO05D002992 3.6e-07 58.9 145 32.4
MSTRG.26159 Avicennia marina HOM05D002974 ORTHO05D002992 4.7e-07 58.5 125 36.8
ECA234G2872 Erigeron canadensis HOM05D002974 ORTHO05D002992 4.7e-07 58.5 110 40.9
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 4.7e-07 58.5 45 60.0
Lalb_Chr19g0133001 Lupinus albus HOM05D002974 ORTHO05D002992 4.7e-07 58.5 47 70.2
AUR62026884 Chenopodium quinoa HOM05D012416 ORTHO05D002992 6.2e-07 58.2 166 31.9
AUR62044059 Chenopodium quinoa HOM05D012416 ORTHO05D006373 6.2e-07 58.2 166 31.9
QL07p010402 Quercus lobata HOM05D002974 ORTHO05D002992 6.2e-07 58.2 137 32.8
unitig_26.g9507 Utricularia gibba HOM05D002974 ORTHO05D002992 6.2e-07 58.2 122 38.5
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 8.1e-07 57.8 46 67.4
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 1.1e-06 57.4 46 69.6
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 1.1e-06 57.4 42 66.7
FAN09G2803 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.1e-06 57.4 107 42.1
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.4e-06 57.0 144 36.1
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 1.4e-06 57.0 45 57.8
FvH4_6g25410 Fragaria vesca HOM05D002974 ORTHO05D002992 1.8e-06 56.6 107 42.1
Phvul.001G123400 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 1.8e-06 56.6 126 30.2
Ah.10g030130 Amaranthus hybridus HOM05D002974 ORTHO05D002992 2.4e-06 56.2 55 49.1
AUR62031748 Chenopodium quinoa HOM05D012416 ORTHO05D006373 2.4e-06 56.2 68 50.0
RcHm_v2.0_Chr2g0125651 Rosa chinensis HOM05D002974 ORTHO05D002992 2.4e-06 56.2 38 73.7
Sc10g0004500 Simmondsia chinensis HOM05D002974 ORTHO05D002992 2.4e-06 56.2 65 47.7
MSTRG.10792 Avicennia marina HOM05D002974 ORTHO05D002992 3.1e-06 55.8 81 42.0
PSO384G2085 Papaver somniferum HOM05D002974 ORTHO05D002992 3.1e-06 55.8 60 51.7
Psat5g220360 Pisum sativum HOM05D002974 ORTHO05D002992 3.1e-06 55.8 123 37.4
VMungo1080G0254 Vigna mungo HOM05D002974 ORTHO05D002992 3.1e-06 55.8 102 38.2
FAN02G0528 Fragaria x ananassa HOM05D002974 ORTHO05D002992 4.0e-06 55.5 107 41.1
Medtr7g089860 Medicago truncatula HOM05D002974 ORTHO05D002992 4.0e-06 55.5 125 36.0
TPR.G8953 Trifolium pratense HOM05D002974 ORTHO05D002992 4.0e-06 55.5 130 34.6
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 5.2e-06 55.1 128 36.7
AL5G38080 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 5.2e-06 55.1 120 39.2
BcaC07g40124 Brassica carinata HOM05D002974 ORTHO05D002992 5.2e-06 55.1 132 34.8
Migut.B01240 Erythranthe guttata HOM05D002974 ORTHO05D002992 5.2e-06 55.1 67 49.3
Glyma.04G134200 Glycine max HOM05D002974 ORTHO05D002992 5.2e-06 55.1 51 56.9
Oeu029509.1 Olea europaea HOM05D002974 ORTHO05D002992 5.2e-06 55.1 157 35.0
arahy.Tifrunner.gnm1.ann1.C03B5F Arachis hypogaea HOM05D002974 ORTHO05D002992 6.8e-06 54.7 60 53.3
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 6.8e-06 54.7 44 63.6
DCAR_025326 Daucus carota HOM05D002974 ORTHO05D002992 6.8e-06 54.7 59 52.5
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 6.8e-06 54.7 118 39.8
Peaxi162Scf00003g00491 Petunia axillaris HOM05D015198 ORTHO05D002992 6.8e-06 54.7 51 58.8
CDE08G1203 Ceratophyllum demersum HOM05D002974 ORTHO05D002992 8.9e-06 54.3 56 55.4
Lalb_Chr21g0315251 Lupinus albus HOM05D002974 ORTHO05D002992 8.9e-06 54.3 56 60.7
MD14G1088500 Malus domestica HOM05D002974 ORTHO05D002992 8.9e-06 54.3 54 59.3
Nitab4.5_0004588g0030 Nicotiana tabacum HOM05D015198 ORTHO05D002992 8.9e-06 54.3 64 45.3
SGA_v2.0_scaffold105G30292 Striga asiatica HOM05D002974 ORTHO05D002992 8.9e-06 54.3 55 52.7
SGA_v2.0_scaffold105G30310 Striga asiatica HOM05D002974 ORTHO05D002992 8.9e-06 54.3 55 52.7
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 8.9e-06 54.3 46 63.0


User provided reference genes

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