Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 8.6e-102 373.6 185 100.0
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 1.6e-87 326.2 185 83.8
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 2.1e-87 325.9 185 83.2
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 1.0e-86 323.6 185 84.3
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 1.3e-78 296.6 186 77.4
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 1.6e-76 289.7 186 76.9
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 5.8e-74 281.2 186 74.2
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 5.8e-74 281.2 186 74.2
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 5.8e-74 281.2 186 74.2
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 7.6e-74 280.8 186 74.2
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 7.6e-74 280.8 186 74.7
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 4.9e-73 278.1 182 74.7
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 6.4e-73 277.7 186 73.1
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 8.4e-73 277.3 182 74.2
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 5.4e-72 274.6 186 72.0
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 2.7e-71 272.3 185 69.2
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 3.5e-71 271.9 186 71.0
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 3.5e-71 271.9 186 71.0
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 3.5e-71 271.9 186 73.7
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 1.3e-70 270.0 186 69.4
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 1.8e-70 269.6 182 73.6
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 3.0e-70 268.9 186 72.6
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 3.9e-70 268.5 182 73.1
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 5.1e-70 268.1 186 69.9
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 6.7e-70 267.7 185 72.4
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 1.1e-69 266.9 179 73.7
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 1.1e-69 266.9 183 73.2
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 1.1e-69 266.9 182 72.5
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 2.5e-69 265.8 187 70.6
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 4.3e-69 265.0 183 73.2
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 4.3e-69 265.0 187 70.6
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 5.6e-69 264.6 181 72.4
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 2.8e-68 262.3 186 71.0
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 6.2e-68 261.2 186 68.3
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 6.2e-68 261.2 186 68.3
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 6.2e-68 261.2 186 69.4
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 1.8e-67 259.6 186 66.7
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 2.4e-67 259.2 186 68.3
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 2.4e-67 259.2 192 68.2
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 3.1e-67 258.8 187 69.5
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 3.1e-67 258.8 186 66.7
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 4.0e-67 258.5 186 67.7
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 5.3e-67 258.1 186 68.8
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 6.9e-67 257.7 186 67.2
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 1.2e-66 256.9 170 71.8
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 1.5e-66 256.5 169 73.4
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 1.5e-66 256.5 187 70.6
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 2.0e-66 256.1 185 68.6
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 3.4e-66 255.4 186 67.7
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 3.4e-66 255.4 183 66.1
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 4.5e-66 255.0 186 68.3
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 5.8e-66 254.6 186 69.9
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 7.6e-66 254.2 186 67.7
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 7.6e-66 254.2 186 69.9
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 9.9e-66 253.8 186 67.2
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 9.9e-66 253.8 186 67.2
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 1.7e-65 253.1 186 66.7
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 2.2e-65 252.7 187 69.0
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 3.8e-65 251.9 186 69.4
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 3.8e-65 251.9 186 66.1
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 1.1e-64 250.4 187 68.4
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 2.4e-64 249.2 186 66.1
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 4.2e-64 248.4 187 67.4
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 5.5e-64 248.1 167 74.3
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 1.2e-63 246.9 187 65.8
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 1.6e-63 246.5 183 67.8
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 1.6e-63 246.5 187 66.3
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 2.1e-63 246.1 186 65.6
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 6.0e-63 244.6 186 66.7
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 7.9e-63 244.2 186 66.7
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 7.9e-63 244.2 207 59.9
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 1.0e-62 243.8 187 66.3
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 1.0e-62 243.8 182 68.7
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 1.0e-62 243.8 183 65.0
Sabra10G0145900 Salix brachista HOM05D005619 ORTHO05D006696 1.0e-62 243.8 185 67.6
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 1.8e-62 243.0 187 65.8
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 6.7e-62 241.1 184 66.8
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 6.7e-62 241.1 186 68.3
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 8.7e-62 240.7 182 67.6
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 1.1e-61 240.4 187 65.8
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 1.9e-61 239.6 182 67.6
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 3.3e-61 238.8 184 64.1
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 5.6e-61 238.0 182 67.0
TWI73G0774 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 5.6e-61 238.0 182 62.6
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 1.3e-60 236.9 187 63.6
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 4.8e-60 235.0 182 63.7
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 4.8e-60 235.0 182 66.5
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 1.1e-59 233.8 182 67.0
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 2.4e-59 232.6 187 65.2
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 5.3e-59 231.5 182 62.6
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 6.9e-59 231.1 182 63.2
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 7.6e-58 227.6 187 64.2
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 8.4e-57 224.2 185 64.9
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 3.2e-56 222.2 187 63.1
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 4.2e-56 221.9 189 63.0
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 5.5e-56 221.5 187 62.6
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 2.1e-55 219.5 183 59.6
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 2.7e-55 219.2 184 60.3
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 3.5e-55 218.8 183 61.2
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 4.6e-55 218.4 189 61.9
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 4.6e-55 218.4 183 61.2
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 6.0e-55 218.0 189 62.4
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 7.9e-55 217.6 189 61.9
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 7.9e-55 217.6 189 61.9
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 7.9e-55 217.6 184 59.8
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 1.3e-54 216.9 189 60.3
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 1.1e-53 213.8 185 61.1
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 4.3e-53 211.8 184 59.2
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 3.1e-51 205.7 150 68.0
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 1.1e-48 197.2 185 53.5
Nitab4.5_0000350g0020 Nicotiana tabacum HOM05D005619 ORTHO05D006696 2.1e-47 193.0 188 58.0
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 3.9e-46 188.7 148 63.5
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 5.1e-46 188.3 162 63.6
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.9e-45 186.4 149 60.4
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 1.9e-45 186.4 205 53.2
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 2.5e-45 186.0 199 53.3
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 4.3e-45 185.3 175 57.7
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 4.3e-45 185.3 182 51.1
Peaxi162Scf00205g01136 Petunia axillaris HOM05D005619 ORTHO05D006696 2.2e-44 183.0 150 64.0
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 2.8e-44 182.6 183 50.3
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 1.4e-43 180.3 183 49.7
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 1.5e-42 176.8 166 56.6
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 7.2e-40 167.9 103 73.8
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 9.4e-40 167.5 183 48.6
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 2.1e-39 166.4 186 50.5
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 3.0e-38 162.5 183 46.4
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 1.1e-37 160.6 112 67.0
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 2.2e-36 156.4 187 42.8
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 8.5e-33 144.4 158 51.3
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 8.5e-33 144.4 149 51.7
ATR0568G146 Amborella trichopoda HOM05D005619 ORTHO05D006696 4.1e-27 125.6 117 57.3
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 3.6e-23 112.5 104 51.9
Actinidia33632 Actinidia chinensis HOM05D005619 ORTHO05D006696 8.8e-22 107.8 98 57.1
C04p07380 Brassica napus HOM05D005619 ORTHO05D006696 2.6e-21 106.3 79 69.6
BcaB08g35316 Brassica carinata HOM05D005619 ORTHO05D006696 5.7e-21 105.1 71 64.8
Cre06.g251750 Chlamydomonas reinhardtii HOM05D005619 ORTHO05D006696 2.7e-18 96.3 188 29.8
HanXRQChr12g0375531 Helianthus annuus HOM05D005619 ORTHO05D006696 2.9e-17 92.8 72 59.7
Thecc.10G017600 Theobroma cacao HOM05D009631 ORTHO05D011824 3.8e-17 92.4 81 64.2
HanXRQChr01g0017101 Helianthus annuus HOM05D005619 ORTHO05D006696 5.5e-16 88.6 62 67.7
MCO08G248 Micromonas commoda HOM05D005619 ORTHO05D006696 7.2e-16 88.2 167 30.5
Cfa027228 Carpinus fangiana HOM05D005619 ORTHO05D006696 1.0e-09 67.8 175 27.4


User provided reference genes

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