Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G153300 Manihot esculenta HOM05D005841 ORTHO05D007132 1.1e-204 716.5 382 100.0
Potri.003G189400 Populus trichocarpa HOM05D005841 ORTHO05D007132 1.2e-161 573.5 384 77.6
Sabra01G0025200 Salix brachista HOM05D005841 ORTHO05D007132 6.0e-158 561.2 383 76.2
Potri.001G036400 Populus trichocarpa HOM05D005841 ORTHO05D007132 8.7e-157 557.4 383 75.7
Atru.chr12.1096 Acer truncatum HOM05D005841 ORTHO05D007132 2.0e-153 546.2 382 73.8
Sabra03G0139600 Salix brachista HOM05D005841 ORTHO05D007132 6.4e-152 541.2 370 75.4
Dinv24065 Davidia involucrata HOM05D005841 ORTHO05D007132 9.3e-151 537.3 382 73.0
CSS0015441 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 4.6e-150 535.0 381 72.7
QL04p022932 Quercus lobata HOM05D005841 ORTHO05D007132 3.9e-149 531.9 403 72.5
vmacro07900 Vaccinium macrocarpon HOM05D005841 ORTHO05D007132 3.9e-149 531.9 381 70.6
Rhsim03G0005600 Rhododendron simsii HOM05D005841 ORTHO05D007132 1.9e-148 529.6 381 71.7
Dinv14310 Davidia involucrata HOM05D005841 ORTHO05D007132 4.8e-147 525.0 381 71.9
CiPaw.14G011500 Carya illinoinensis HOM05D005841 ORTHO05D007132 2.4e-146 522.7 413 70.7
Thecc.10G128400 Theobroma cacao HOM05D005841 ORTHO05D007132 1.0e-144 517.3 381 69.0
Glyma.04G125600 Glycine max HOM05D005841 ORTHO05D007132 8.4e-144 514.2 380 71.3
Gorai.010G208800 Gossypium raimondii HOM05D005841 ORTHO05D007132 5.5e-143 511.5 381 69.3
Gohir.D06G178900 Gossypium hirsutum HOM05D005841 ORTHO05D007132 2.1e-142 509.6 381 69.0
Ciclev10001427m.g Citrus clementina HOM05D005841 ORTHO05D007132 2.7e-142 509.2 408 66.9
Lj3g0005753 Lotus japonicus HOM05D005841 ORTHO05D007132 2.7e-142 509.2 379 70.2
Gohir.A06G171000 Gossypium hirsutum HOM05D005841 ORTHO05D007132 3.5e-142 508.8 381 69.0
Medtr3g011510 Medicago truncatula HOM05D005841 ORTHO05D007132 6.0e-142 508.1 380 70.5
TWI38G1535 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 6.0e-142 508.1 377 69.2
Actinidia22040 Actinidia chinensis HOM05D005841 ORTHO05D007132 1.8e-141 506.5 366 71.9
Lju124A25T34 Lonicera japonica HOM05D005841 ORTHO05D007132 5.1e-141 505.0 380 71.8
Lalb_Chr18g0048171 Lupinus albus HOM05D005841 ORTHO05D007132 5.1e-141 505.0 379 70.4
COL.COLO4_09288 Corchorus olitorius HOM05D005841 ORTHO05D007132 1.5e-140 503.4 382 67.8
Glyma.06G313000 Glycine max HOM05D005841 ORTHO05D007132 1.5e-140 503.4 380 70.5
Phvul.005G012800 Phaseolus vulgaris HOM05D005841 ORTHO05D007132 1.3e-139 500.4 380 68.9
VMungo1080G1721 Vigna mungo HOM05D005841 ORTHO05D007132 1.6e-139 500.0 380 69.7
MSTRG.19910 Avicennia marina HOM05D005841 ORTHO05D007132 3.7e-139 498.8 377 69.2
Duzib128G0994 Durio zibethinus HOM05D005841 ORTHO05D007132 1.1e-138 497.3 381 67.2
PSO384G2928 Papaver somniferum HOM05D005841 ORTHO05D007132 1.3e-136 490.3 380 67.1
TWI15G0221 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 1.7e-136 490.0 381 66.1
PSO339G0077 Papaver somniferum HOM05D005841 ORTHO05D007132 3.8e-136 488.8 380 66.8
THA.LOC104809184 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 3.8e-136 488.8 381 65.6
Ca_26913_v3 Cicer arietinum L. HOM05D005841 ORTHO05D007132 5.0e-136 488.4 364 70.6
arahy.Tifrunner.gnm1.ann1.AX9XXP Arachis hypogaea HOM05D005841 ORTHO05D007132 8.4e-136 487.6 391 67.5
Haze_02951 Corylus avellana HOM05D005841 ORTHO05D007132 1.1e-135 487.3 478 57.1
Sc20g0000960 Simmondsia chinensis HOM05D005841 ORTHO05D007132 1.4e-135 486.9 381 65.9
Peaxi162Scf00258g00731 Petunia axillaris HOM05D005841 ORTHO05D007132 3.2e-135 485.7 408 65.0
TPR.G5121 Trifolium pratense HOM05D005841 ORTHO05D007132 1.6e-134 483.4 416 63.7
GSVIVG01027370001 Vitis vinifera HOM05D005841 ORTHO05D007132 3.9e-133 478.8 388 66.5
Oeu007758.1 Olea europaea HOM05D005841 ORTHO05D007132 5.1e-133 478.4 378 65.6
Nitab4.5_0000324g0020 Nicotiana tabacum HOM05D005841 ORTHO05D007132 1.1e-132 477.2 408 64.2
Aa31sc488G20 Aethionema arabicum HOM05D005841 ORTHO05D007132 1.5e-132 476.9 376 65.2
DCAR_019783 Daucus carota HOM05D005841 ORTHO05D007132 1.5e-132 476.9 382 66.0
Lsat_1_v5_gn_5_163601 Lactuca sativa HOM05D005841 ORTHO05D007132 1.9e-132 476.5 430 61.6
THA.LOC104824200 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 9.7e-132 474.2 382 65.4
Eucgr.G03178 Eucalyptus grandis HOM05D005841 ORTHO05D007132 1.3e-131 473.8 410 66.6
Nitab4.5_0004458g0010 Nicotiana tabacum HOM05D005841 ORTHO05D007132 1.3e-131 473.8 407 64.1
EL10Ac9g20941 Beta vulgaris HOM05D005841 ORTHO05D007132 1.8e-130 469.9 363 67.5
Hund07799 Selenicereus undatus HOM05D005841 ORTHO05D007132 1.8e-130 469.9 379 65.4
MSTRG.26082 Avicennia marina HOM05D005841 ORTHO05D007132 6.9e-130 468.0 395 63.3
CsaV3_5G029280 Cucumis sativus L. HOM05D005841 ORTHO05D007132 3.4e-129 465.7 419 59.7
Cc06_g15810 Coffea canephora HOM05D005841 ORTHO05D007132 4.5e-129 465.3 393 64.9
MELO3C011778.2 Cucumis melo HOM05D005841 ORTHO05D007132 4.5e-129 465.3 418 59.8
AUR62041651 Chenopodium quinoa HOM05D005841 ORTHO05D007132 6.5e-128 461.5 363 66.7
CANSAT56G0667 Cannabis sativa HOM05D005841 ORTHO05D007132 1.1e-127 460.7 402 62.2
Ah.07g203740 Amaranthus hybridus HOM05D005841 ORTHO05D007132 3.6e-126 455.7 363 66.4
ECA248G0891 Erigeron canadensis HOM05D005841 ORTHO05D007132 7.9e-126 454.5 437 58.8
Sed0011967 Sechium edule HOM05D005841 ORTHO05D007132 2.3e-125 453.0 431 56.8
PGSC0003DMG400023670 Solanum tuberosum HOM05D005841 ORTHO05D007132 2.3e-125 453.0 425 61.2
AT3G54360 Arabidopsis thaliana HOM05D005841 ORTHO05D007132 3.0e-125 452.6 414 59.2
C08p29570 Brassica napus HOM05D005841 ORTHO05D007132 3.9e-125 452.2 421 59.9
BolC8t50563H Brassica oleracea HOM05D005841 ORTHO05D007132 3.9e-125 452.2 422 59.7
AL5G35420 Arabidopsis lyrata HOM05D005841 ORTHO05D007132 8.8e-125 451.1 426 57.7
HanXRQChr13g0390471 Helianthus annuus HOM05D005841 ORTHO05D007132 1.1e-124 450.7 346 67.3
Sed0002293 Sechium edule HOM05D005841 ORTHO05D007132 1.5e-124 450.3 401 59.9
BcaB02g07739 Brassica carinata HOM05D005841 ORTHO05D007132 2.0e-124 449.9 441 55.8
BcaB01g00199 Brassica carinata HOM05D005841 ORTHO05D007132 2.5e-124 449.5 398 62.3
Sopen10g031070 Solanum pennellii HOM05D005841 ORTHO05D007132 2.5e-124 449.5 450 58.4
arahy.Tifrunner.gnm1.ann1.87YK44 Arachis hypogaea HOM05D005841 ORTHO05D007132 3.3e-124 449.1 397 63.7
Thhalv10010421m.g Eutrema salsugineum HOM05D005841 ORTHO05D007132 4.3e-124 448.7 418 59.6
A09p47340 Brassica napus HOM05D005841 ORTHO05D007132 7.4e-124 448.0 421 58.9
Sp5g08040 Schrenkiella parvula HOM05D005841 ORTHO05D007132 2.2e-123 446.4 428 57.0
unitig_699.g19444 Utricularia gibba HOM05D005841 ORTHO05D007132 3.7e-123 445.7 378 61.4
Carub.0005s2096 Capsella rubella HOM05D005841 ORTHO05D007132 4.8e-123 445.3 427 57.4
CARHR164270 Cardamine hirsuta HOM05D005841 ORTHO05D007132 8.2e-123 444.5 418 58.1
BraA09t40195Z Brassica rapa HOM05D005841 ORTHO05D007132 1.1e-122 444.1 422 58.8
MBI19_g24060_MAGBIO Magnolia biondii HOM05D005841 ORTHO05D007132 1.4e-122 443.7 408 63.2
Psat5g225080 Pisum sativum HOM05D005841 ORTHO05D007132 4.1e-122 442.2 330 70.0
A07p22080 Brassica napus HOM05D005841 ORTHO05D007132 1.2e-121 440.7 417 58.5
BraA07t29891Z Brassica rapa HOM05D005841 ORTHO05D007132 1.2e-121 440.7 417 58.5
AUR62035532 Chenopodium quinoa HOM05D005841 ORTHO05D007132 3.4e-121 439.1 363 64.5
Solyc10g080520.3 Solanum lycopersicum HOM05D005841 ORTHO05D007132 3.2e-119 432.6 378 64.0
MD07G1085200 Malus domestica HOM05D005841 ORTHO05D007132 3.6e-118 429.1 388 59.5
CDE02G3427 Ceratophyllum demersum HOM05D005841 ORTHO05D007132 3.9e-117 425.6 379 59.1
Aqoxy3G04362 Aquilegia oxysepala HOM05D005841 ORTHO05D007132 5.7e-116 421.8 380 59.5
Migut.J01841 Erythranthe guttata HOM05D005841 ORTHO05D007132 2.8e-115 419.5 378 59.8
Prupe.2G051700 Prunus persica HOM05D005841 ORTHO05D007132 8.2e-115 417.9 389 59.6
ClCG11G012870 Citrullus lanatus HOM05D005841 ORTHO05D007132 3.1e-114 416.0 418 56.0
Nn2g15922 Nelumbo nucifera HOM05D005841 ORTHO05D007132 9.1e-114 414.5 376 61.2
RcHm_v2.0_Chr1g0330051 Rosa chinensis HOM05D005841 ORTHO05D007132 1.2e-113 414.1 381 59.3
SGA_v2.0_scaffold69G23059 Striga asiatica HOM05D005841 ORTHO05D007132 2.6e-113 412.9 375 60.3
SEGI_15550 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 5.0e-112 408.7 388 56.7
Zm00001eb126920 Zea mays HOM05D005841 ORTHO05D007132 4.2e-111 405.6 358 59.5
FvH4_7g04620 Fragaria vesca HOM05D005841 ORTHO05D007132 7.2e-111 404.8 378 58.2
BcaC08g44679 Brassica carinata HOM05D005841 ORTHO05D007132 3.9e-109 399.1 385 57.7
Os01g0104100 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 1.3e-107 394.0 385 56.1
C06p22120 Brassica napus HOM05D005841 ORTHO05D007132 8.2e-107 391.3 294 68.0
BolC6t37399H Brassica oleracea HOM05D005841 ORTHO05D007132 8.2e-107 391.3 294 68.0
FAN06G4202 Fragaria x ananassa HOM05D005841 ORTHO05D007132 3.5e-105 386.0 365 57.5
FAN03G2595 Fragaria x ananassa HOM05D005841 ORTHO05D007132 4.5e-105 385.6 365 57.3
FAN06G1077 Fragaria x ananassa HOM05D005841 ORTHO05D007132 4.5e-105 385.6 365 57.3
FAN10G3225 Fragaria x ananassa HOM05D005841 ORTHO05D007132 7.7e-105 384.8 365 57.3
FAN01G0675 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.0e-104 384.4 365 57.3
Gorai.011G224300 Gossypium raimondii HOM05D005841 ORTHO05D007132 1.3e-96 357.5 270 66.7
Pp3c4_17260 Physcomitrium patens HOM05D005841 ORTHO05D007132 6.5e-96 355.1 340 56.2
Os02g0795300 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 7.2e-95 351.7 386 51.0
Mapoly0042s0033 Marchantia polymorpha HOM05D005841 ORTHO05D007132 1.0e-93 347.8 383 50.4
CSS0023245 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 4.2e-87 325.9 234 73.1
AagrBONN_evm.TU.Sc2ySwM_344.2135 Anthoceros agrestis HOM05D005841 ORTHO05D007132 7.2e-87 325.1 385 48.8
SMO194G0025 Selaginella moellendorffii HOM05D005841 ORTHO05D007132 1.6e-81 307.4 345 49.9
Ah.15g098060 Amaranthus hybridus HOM05D005841 ORTHO05D007132 1.3e-80 304.3 255 65.1
AUR62039567 Chenopodium quinoa HOM05D005841 ORTHO05D007132 1.6e-78 297.4 386 48.2
AUR62041645 Chenopodium quinoa HOM05D005841 ORTHO05D007132 8.9e-77 291.6 235 67.7
ATR0068G039 Amborella trichopoda HOM05D005841 ORTHO05D007132 2.4e-66 256.9 236 58.1
Gohir.D10G200101 Gossypium hirsutum HOM05D005841 ORTHO05D007132 1.0e-56 224.9 150 72.0
Cpa.g.sc33.143 Carica papaya HOM05D005841 ORTHO05D007132 1.9e-55 220.7 155 72.3
CBR_g19049 Chara braunii HOM05D005841 ORTHO05D007132 4.3e-55 219.5 403 35.7
HPP92_001714 Vanilla planifolia HOM05D005841 ORTHO05D007132 3.6e-54 216.5 258 48.4
Hma1.2p1_3953F.1_g338070 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 1.0e-48 198.4 146 68.5
FAN03G2434 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.1e-45 188.3 130 71.5
TAR629G2175 Trochodendron aralioides HOM05D005841 ORTHO05D007132 3.8e-43 179.9 126 72.2
SEGI_12352 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 1.9e-39 167.5 154 56.5
Gohir.D10G200050 Gossypium hirsutum HOM05D005841 ORTHO05D007132 2.8e-38 163.7 115 69.6
Hma1.2p1_3953F.1_g338060 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 3.4e-28 130.2 79 82.3
SEGI_26376 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 1.9e-23 114.4 147 47.6
Lsat_1_v5_gn_1_17940 Lactuca sativa HOM05D005841 ORTHO05D007132 1.1e-18 98.6 72 68.1
ATR0068G030 Amborella trichopoda HOM05D005841 ORTHO05D007132 2.0e-12 77.8 66 62.1
Cre03.g172600 Chlamydomonas reinhardtii HOM05D005841 ORTHO05D007132 8.5e-11 72.4 334 21.9
Psat0s5799g0040 Pisum sativum HOM05D005841 ORTHO05D007132 6.7e-08 62.8 50 64.0
Psat7g004640 Pisum sativum HOM05D000860 ORTHO05D005731 6.7e-08 62.8 52 63.5
TPR.G5122 Trifolium pratense HOM05D003377 ORTHO05D004080 3.3e-07 60.5 66 56.1
CiPaw.13G018400 Carya illinoinensis HOM05D005841 ORTHO05D007132 8.2e-06 55.8 41 70.7


User provided reference genes

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