Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G151400 Manihot esculenta HOM05D008031 ORTHO05D010063 1.2e-88 329.7 162 100.0
Potri.001G162100 Populus trichocarpa HOM05D008031 ORTHO05D010063 4.6e-59 231.5 164 72.0
Potri.003G073200 Populus trichocarpa HOM05D008031 ORTHO05D010063 5.0e-53 211.5 164 67.1
Atru.chr1.4165 Acer truncatum HOM05D008031 ORTHO05D010063 2.1e-51 206.1 165 66.1
Atru.chr1.4161 Acer truncatum HOM05D008031 ORTHO05D010063 1.3e-50 203.4 165 63.6
Thecc.06G130800 Theobroma cacao HOM05D008031 ORTHO05D010063 4.1e-47 191.8 164 60.4
COL.COLO4_30875 Corchorus olitorius HOM05D008031 ORTHO05D010063 1.0e-45 187.2 164 60.4
TWI14G1127 Tripterygium wilfordii HOM05D008031 ORTHO05D010063 3.8e-45 185.3 164 59.8
QL05p000882 Quercus lobata HOM05D008031 ORTHO05D010063 2.5e-44 182.6 164 61.0
QL05p001111 Quercus lobata HOM05D008031 ORTHO05D010063 2.5e-44 182.6 164 61.0
CiPaw.01G211000 Carya illinoinensis HOM05D008031 ORTHO05D010063 2.7e-43 179.1 167 59.3
GSVIVG01016662001 Vitis vinifera HOM05D008031 ORTHO05D010063 7.9e-43 177.6 164 58.5
Haze_16140 Corylus avellana HOM05D001728 ORTHO05D004321 1.8e-42 176.4 163 55.8
Actinidia21841 Actinidia chinensis HOM05D008031 ORTHO05D010063 3.7e-40 168.7 169 55.6
Ciclev10027015m.g Citrus clementina HOM05D008031 ORTHO05D010063 3.7e-40 168.7 201 50.7
CiPaw.02G130600 Carya illinoinensis HOM05D008031 ORTHO05D010063 1.1e-39 167.2 170 54.7
Gohir.D10G051032 Gossypium hirsutum HOM05D001728 ORTHO05D004321 9.1e-39 164.1 164 54.3
Gorai.011G054900 Gossypium raimondii HOM05D001728 ORTHO05D004321 9.1e-39 164.1 164 54.3
Cpa.g.sc25.199 Carica papaya HOM05D008031 ORTHO05D010063 1.5e-38 163.3 166 57.8
Actinidia24421 Actinidia chinensis HOM05D001728 ORTHO05D004321 2.6e-38 162.5 169 58.6
Gohir.A10G048037 Gossypium hirsutum HOM05D001728 ORTHO05D004321 4.5e-38 161.8 164 53.7
Prupe.3G030600 Prunus persica HOM05D008031 ORTHO05D010063 1.3e-37 160.2 164 53.0
CSS0025062 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004321 2.2e-37 159.5 168 54.8
Hma1.2p1_0090F.1_g045750 Hydrangea macrophylla HOM05D008031 ORTHO05D010063 3.8e-37 158.7 165 53.3
Hma1.2p1_2628F.1_g325675 Hydrangea macrophylla HOM05D008031 ORTHO05D010063 3.8e-37 158.7 165 53.3
Eucgr.J02592 Eucalyptus grandis HOM05D008031 ORTHO05D010063 1.1e-36 157.1 164 53.0
TAR626G1534 Trochodendron aralioides HOM05D008031 ORTHO05D010063 2.5e-36 156.0 164 54.3
PGR102G3014 Punica granatum HOM05D008031 ORTHO05D010063 5.5e-36 154.8 170 54.1
Peaxi162Scf00038g02327 Petunia axillaris HOM05D008031 ORTHO05D010063 7.2e-36 154.5 168 51.8
Cfa003457 Carpinus fangiana HOM05D008031 ORTHO05D010063 3.6e-35 152.1 166 51.2
Rhsim08G0245200 Rhododendron simsii HOM05D008031 ORTHO05D010063 3.6e-35 152.1 166 51.8
Duzib235G0155 Durio zibethinus HOM05D008031 ORTHO05D010063 1.4e-34 150.2 136 57.4
FAN02G3240 Fragaria x ananassa HOM05D008031 ORTHO05D010063 3.3e-33 145.6 162 47.5
FvH4_6g35970 Fragaria vesca HOM05D008031 ORTHO05D010063 5.7e-33 144.8 162 48.1
FAN09G4453 Fragaria x ananassa HOM05D008031 ORTHO05D010063 5.7e-33 144.8 162 48.1
FAN14G4753 Fragaria x ananassa HOM05D008031 ORTHO05D010063 5.7e-33 144.8 162 48.1
RcHm_v2.0_Chr2g0148091 Rosa chinensis HOM05D008031 ORTHO05D010063 7.4e-33 144.4 162 46.9
Glyma.07G046300 Glycine max HOM05D008031 ORTHO05D010063 1.7e-32 143.3 167 51.5
FAN05G2192 Fragaria x ananassa HOM05D008031 ORTHO05D010063 1.4e-31 140.2 162 46.9
MBI19_g32875_MAGBIO Magnolia biondii HOM05D008031 ORTHO05D010063 1.4e-31 140.2 170 51.8
MD09G1172200 Malus domestica HOM05D008031 ORTHO05D010063 4.1e-31 138.7 145 51.7
Lj3g0013752 Lotus japonicus HOM05D008031 ORTHO05D010063 5.3e-31 138.3 167 50.9
MD17G1154700 Malus domestica HOM05D008031 ORTHO05D010063 3.5e-30 135.6 145 52.4
VMungo0331G1222 Vigna mungo HOM05D008031 ORTHO05D010063 4.5e-30 135.2 168 48.8
Sopen03g041440 Solanum pennellii HOM05D008031 ORTHO05D010063 7.7e-30 134.4 169 46.7
Solyc03g123670.3 Solanum lycopersicum HOM05D008031 ORTHO05D010063 1.3e-29 133.7 169 46.7
PGSC0003DMG400009151 Solanum tuberosum HOM05D008031 ORTHO05D010063 1.7e-29 133.3 169 47.3
Lalb_Chr10g0101091 Lupinus albus HOM05D008031 ORTHO05D010063 2.9e-29 132.5 166 46.4
Phvul.010G122700 Phaseolus vulgaris HOM05D008031 ORTHO05D010063 2.9e-29 132.5 169 49.1
ClCG07G014260 Citrullus lanatus HOM05D008031 ORTHO05D010063 1.1e-28 130.6 165 47.9
CsaV3_3G031060 Cucumis sativus L. HOM05D008031 ORTHO05D010063 1.9e-28 129.8 165 46.7
Oeu019510.1 Olea europaea HOM05D008031 ORTHO05D010063 3.2e-28 129.0 166 47.6
Sed0024761 Sechium edule HOM05D008031 ORTHO05D010063 3.2e-28 129.0 165 47.9
Cc04_g00650 Coffea canephora HOM05D008031 ORTHO05D010063 1.2e-27 127.1 168 47.0
MELO3C022708.2 Cucumis melo HOM05D008031 ORTHO05D010063 2.1e-27 126.3 165 45.5
Nitab4.5_0006338g0010 Nicotiana tabacum HOM05D008031 ORTHO05D010063 4.7e-27 125.2 168 45.8
Medtr8g023390 Medicago truncatula HOM05D008031 ORTHO05D010063 1.8e-26 123.2 155 49.0
CANSAT56G3277 Cannabis sativa HOM05D008031 ORTHO05D010063 9.7e-25 117.5 166 42.2
SGA_v2.0_scaffold71G23934 Striga asiatica HOM05D008031 ORTHO05D010063 1.7e-24 116.7 165 41.2
Aqoxy7G04192 Aquilegia oxysepala HOM05D008031 ORTHO05D010063 1.1e-23 114.0 171 45.6
Nitab4.5_0006966g0010 Nicotiana tabacum HOM05D008031 ORTHO05D010063 1.1e-23 114.0 169 41.4
arahy.Tifrunner.gnm1.ann1.8JA41T Arachis hypogaea HOM05D008031 ORTHO05D010063 1.8e-23 113.2 170 45.9
Migut.I01137 Erythranthe guttata HOM05D008031 ORTHO05D010063 1.8e-23 113.2 170 45.9
TPR.G29474 Trifolium pratense HOM05D008031 ORTHO05D010063 5.3e-23 111.7 171 42.1
arahy.Tifrunner.gnm1.ann1.PVL51W Arachis hypogaea HOM05D008031 ORTHO05D010063 9.1e-23 110.9 167 44.9
Oeu053417.1 Olea europaea HOM05D008031 ORTHO05D010063 9.1e-23 110.9 168 43.5
arahy.Tifrunner.gnm1.ann1.CKB8X1 Arachis hypogaea HOM05D008031 ORTHO05D010063 1.2e-22 110.5 170 44.7
Dinv20378 Davidia involucrata HOM05D001728 ORTHO05D004321 1.6e-22 110.2 110 58.2
Ah.08g217400 Amaranthus hybridus HOM05D008031 ORTHO05D010063 3.8e-21 105.5 176 42.6
Glyma.16G014500 Glycine max HOM05D008031 ORTHO05D010063 3.2e-20 102.4 167 41.9
Eucgr.I02164 Eucalyptus grandis HOM05D008031 ORTHO05D010063 7.2e-20 101.3 173 39.9
DCAR_022641 Daucus carota HOM05D008031 ORTHO05D010063 1.6e-19 100.1 173 43.4
Hund18631 Selenicereus undatus HOM05D008031 ORTHO05D010063 1.5e-17 93.6 176 38.1
Lsat_1_v5_gn_4_90600 Lactuca sativa HOM05D008031 ORTHO05D010063 2.2e-16 89.7 152 42.1
Oeu015468.1 Olea europaea HOM05D008031 ORTHO05D010063 1.8e-15 86.7 162 40.1
Rhsim08G0245400 Rhododendron simsii HOM05D002316 ORTHO05D002280 4.2e-12 75.5 70 54.3
Sabra08G0151700 Salix brachista HOM05D005099 ORTHO05D006087 5.5e-12 75.1 187 33.2
SalBow6G0345 Salvia bowleyana HOM05D008031 ORTHO05D010063 5.5e-12 75.1 158 39.9
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 9.5e-12 74.3 184 35.3
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 1.6e-11 73.6 175 33.7
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 1.6e-11 73.6 196 34.2
Potri.008G219500 Populus trichocarpa HOM05D005099 ORTHO05D006087 6.1e-11 71.6 190 33.7
HPP92_016648 Vanilla planifolia HOM05D042795 ORTHO05D010063 2.3e-10 69.7 148 37.8
ATR0693G064 Amborella trichopoda HOM05D005099 ORTHO05D006087 3.0e-10 69.3 165 33.3
CiPaw.01G145600 Carya illinoinensis HOM05D005099 ORTHO05D006087 3.0e-10 69.3 182 31.3
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 4.0e-10 68.9 174 32.8
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 4.0e-10 68.9 180 33.3
AUR62018071 Chenopodium quinoa HOM05D005099 ORTHO05D006087 8.8e-10 67.8 181 33.7
Haze_01169 Corylus avellana HOM05D005099 ORTHO05D006087 1.2e-09 67.4 182 33.0
Dinv44353 Davidia involucrata HOM05D005099 ORTHO05D006087 1.2e-09 67.4 184 31.0
MBI18_g04556_MAGBIO Magnolia biondii HOM05D005099 ORTHO05D006087 1.2e-09 67.4 169 33.1
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 2.0e-09 66.6 187 33.7
SalBow2G2334 Salvia bowleyana HOM05D005099 ORTHO05D006087 2.6e-09 66.2 175 34.9
THA.LOC104827334 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 2.6e-09 66.2 190 32.1
HanXRQChr17g0536041 Helianthus annuus HOM05D005099 ORTHO05D006087 3.4e-09 65.9 178 31.5
Manes.15G010800 Manihot esculenta HOM05D005099 ORTHO05D006087 3.4e-09 65.9 178 31.5
Duzib151G0929 Durio zibethinus HOM05D005099 ORTHO05D006087 4.4e-09 65.5 189 31.7
TAR362G0212 Trochodendron aralioides HOM05D005099 ORTHO05D006087 4.4e-09 65.5 178 32.6
CsaV3_6G023860 Cucumis sativus L. HOM05D005099 ORTHO05D006087 5.7e-09 65.1 189 33.3
Phvul.009G250300 Phaseolus vulgaris HOM05D005099 ORTHO05D006087 5.7e-09 65.1 185 30.3
HPP92_016651 Vanilla planifolia HOM05D042795 ORTHO05D010063 5.7e-09 65.1 148 37.2
EL10Ac3g06640 Beta vulgaris HOM05D005099 ORTHO05D006087 7.5e-09 64.7 182 32.4
AUR62015274 Chenopodium quinoa HOM05D005099 ORTHO05D006087 7.5e-09 64.7 181 33.7
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 7.5e-09 64.7 181 30.9
Hma1.2p1_0804F.1_g221070 Hydrangea macrophylla HOM05D005099 ORTHO05D006087 1.3e-08 63.9 181 32.6
MSTRG.3894 Avicennia marina HOM05D005099 ORTHO05D006087 1.7e-08 63.5 172 32.0
Nn3g21536 Nelumbo nucifera HOM05D005099 ORTHO05D006087 2.2e-08 63.2 178 33.7
Oeu033813.1 Olea europaea HOM05D005099 ORTHO05D006087 2.2e-08 63.2 183 32.8
Peaxi162Scf00065g00138 Petunia axillaris HOM05D005099 ORTHO05D006087 2.8e-08 62.8 199 30.7
TAR365G0602 Trochodendron aralioides HOM05D005099 ORTHO05D006087 2.8e-08 62.8 190 31.1
vmacro15214 Vaccinium macrocarpon HOM05D005099 ORTHO05D006087 3.7e-08 62.4 163 30.7
Manes.03G198300 Manihot esculenta HOM05D005099 ORTHO05D006087 4.9e-08 62.0 182 31.9
MELO3C021313.2 Cucumis melo HOM05D005099 ORTHO05D006087 6.3e-08 61.6 183 32.8
CiPaw.02G080200 Carya illinoinensis HOM05D005099 ORTHO05D006087 8.3e-08 61.2 187 30.5
Ah.13g074810 Amaranthus hybridus HOM05D005099 ORTHO05D006087 1.4e-07 60.5 169 32.0
SEGI_30103 Sequoiadendron giganteum HOM05D036824 ORTHO05D010063 2.4e-07 59.7 164 33.5
SEGI_39614 Sequoiadendron giganteum HOM05D036824 ORTHO05D010063 2.4e-07 59.7 164 33.5
Dinv29728 Davidia involucrata HOM05D005099 ORTHO05D006087 3.1e-07 59.3 176 30.1
Potri.010G010600 Populus trichocarpa HOM05D005099 ORTHO05D006087 4.1e-07 58.9 188 30.3
Sed0019517 Sechium edule HOM05D005099 ORTHO05D006087 4.1e-07 58.9 179 31.3
ClCG06G004980 Citrullus lanatus HOM05D005099 ORTHO05D006087 5.4e-07 58.5 180 32.2
Cc03_g01550 Coffea canephora HOM05D005099 ORTHO05D006087 9.2e-07 57.8 188 30.3
FvH4_4g18620 Fragaria vesca HOM05D005099 ORTHO05D006087 9.2e-07 57.8 182 29.7
FAN12G1484 Fragaria x ananassa HOM05D005099 ORTHO05D006087 9.2e-07 57.8 182 29.7
FAN12G1671 Fragaria x ananassa HOM05D005099 ORTHO05D006087 9.2e-07 57.8 182 29.7
Atru.chr4.2896 Acer truncatum HOM05D005099 ORTHO05D006087 1.2e-06 57.4 189 29.6
Carub.0003s0637 Capsella rubella HOM05D005099 ORTHO05D006087 1.2e-06 57.4 178 30.9
THA.LOC104818909 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 1.6e-06 57.0 205 30.2
PSO407G0003 Papaver somniferum HOM05D005099 ORTHO05D006087 2.0e-06 56.6 198 32.8
Sp2g19520 Schrenkiella parvula HOM05D005099 ORTHO05D006087 2.7e-06 56.2 191 29.3
PGR004G0666 Punica granatum HOM05D005099 ORTHO05D006087 3.5e-06 55.8 182 29.7
TWI73G1062 Tripterygium wilfordii HOM05D005099 ORTHO05D006087 4.5e-06 55.5 197 29.4
VMungo1309G2116 Vigna mungo HOM05D005099 ORTHO05D006087 4.5e-06 55.5 186 29.6
Oeu006417.1 Olea europaea HOM05D005099 ORTHO05D006087 7.7e-06 54.7 182 30.2
Sabra10G0006200 Salix brachista HOM05D005099 ORTHO05D006087 7.7e-06 54.7 187 28.9


User provided reference genes

Program Settings