Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G145900 Manihot esculenta HOM05D006176 ORTHO05D007346 8.3e-67 256.9 130 100.0
Duzib192G0929 Durio zibethinus HOM05D006176 ORTHO05D007346 8.3e-35 150.6 121 62.8
Atru.chr1.4021 Acer truncatum HOM05D006176 ORTHO05D007346 1.9e-34 149.4 120 60.8
Atru.chr1.4004 Acer truncatum HOM05D006176 ORTHO05D007346 5.4e-34 147.9 120 60.0
Thecc.06G122200 Theobroma cacao HOM05D006176 ORTHO05D007346 5.4e-34 147.9 121 59.5
Cfa003523 Carpinus fangiana HOM05D006176 ORTHO05D007346 4.6e-33 144.8 125 58.4
Potri.003G067200 Populus trichocarpa HOM05D006176 ORTHO05D007346 1.3e-32 143.3 122 58.2
Gohir.A05G139800 Gossypium hirsutum HOM05D006176 ORTHO05D007346 8.6e-32 140.6 127 55.1
Haze_16045 Corylus avellana HOM05D006176 ORTHO05D007346 1.1e-31 140.2 125 56.8
Gohir.D05G142000 Gossypium hirsutum HOM05D006176 ORTHO05D007346 1.5e-31 139.8 127 55.1
Gorai.009G146100 Gossypium raimondii HOM05D006176 ORTHO05D007346 1.5e-31 139.8 127 55.1
COL.COLO4_30741 Corchorus olitorius HOM05D006176 ORTHO05D007346 3.6e-30 135.2 123 59.3
Potri.001G167600 Populus trichocarpa HOM05D006176 ORTHO05D007346 1.8e-29 132.9 127 55.9
Ah.08g216920 Amaranthus hybridus HOM05D006176 ORTHO05D007346 5.2e-29 131.3 116 56.9
Dinv37860 Davidia involucrata HOM05D006176 ORTHO05D007346 6.8e-29 131.0 101 65.3
Actinidia26022 Actinidia chinensis HOM05D006176 ORTHO05D007346 8.9e-29 130.6 118 55.9
RcHm_v2.0_Chr2g0146001 Rosa chinensis HOM05D006176 ORTHO05D007346 8.9e-29 130.6 109 59.6
FAN09G3283 Fragaria x ananassa HOM05D006176 ORTHO05D007346 2.6e-28 129.0 130 52.3
Glyma.16G008800 Glycine max HOM05D006176 ORTHO05D007346 4.4e-28 128.3 129 55.8
TWI75G0921 Tripterygium wilfordii HOM05D006176 ORTHO05D007346 5.8e-28 127.9 117 53.8
Ca_23393_v3 Cicer arietinum L. HOM05D006176 ORTHO05D007346 7.5e-28 127.5 114 61.4
CiPaw.01G217500 Carya illinoinensis HOM05D006176 ORTHO05D007346 9.9e-28 127.1 126 55.6
Dinv20423 Davidia involucrata HOM05D006176 ORTHO05D007346 1.3e-27 126.7 109 64.2
FAN05G0172 Fragaria x ananassa HOM05D006176 ORTHO05D007346 2.2e-27 125.9 114 57.9
Glyma.07G040000 Glycine max HOM05D006176 ORTHO05D007346 2.2e-27 125.9 133 55.6
Nitab4.5_0010678g0020 Nicotiana tabacum HOM05D006176 ORTHO05D007346 2.2e-27 125.9 111 50.5
Gorai.011G060500 Gossypium raimondii HOM05D006176 ORTHO05D007346 2.9e-27 125.6 121 55.4
FvH4_6g34980 Fragaria vesca HOM05D006176 ORTHO05D007346 4.9e-27 124.8 109 57.8
FAN14G1476 Fragaria x ananassa HOM05D006176 ORTHO05D007346 4.9e-27 124.8 109 57.8
Gohir.A10G054700 Gossypium hirsutum HOM05D006176 ORTHO05D007346 6.4e-27 124.4 121 54.5
Gohir.D10G056700 Gossypium hirsutum HOM05D006176 ORTHO05D007346 6.4e-27 124.4 121 54.5
MD09G1180800 Malus domestica HOM05D006176 ORTHO05D007346 6.4e-27 124.4 107 57.0
Medtr8g021025 Medicago truncatula HOM05D006176 ORTHO05D007346 6.4e-27 124.4 133 54.9
MD17G1166900 Malus domestica HOM05D006176 ORTHO05D007346 2.4e-26 122.5 106 55.7
Nn8g38624 Nelumbo nucifera HOM05D006176 ORTHO05D007346 2.4e-26 122.5 113 53.1
Phvul.010G128700 Phaseolus vulgaris HOM05D006176 ORTHO05D007346 3.2e-26 122.1 113 58.4
EL10Ac7g16423 Beta vulgaris HOM05D006176 ORTHO05D007346 9.2e-26 120.6 111 57.7
Nitab4.5_0000255g0320 Nicotiana tabacum HOM05D006176 ORTHO05D007346 1.6e-25 119.8 106 50.9
Prupe.3G039100 Prunus persica HOM05D006176 ORTHO05D007346 6.0e-25 117.9 109 56.0
Lj3g0022886 Lotus japonicus HOM05D006176 ORTHO05D007346 1.0e-24 117.1 126 54.8
TPR.G16753 Trifolium pratense HOM05D006176 ORTHO05D007346 1.7e-24 116.3 111 57.7
Rhsim12G0210400 Rhododendron simsii HOM05D006176 ORTHO05D007346 2.3e-24 115.9 125 50.4
Rhsim12G0210800 Rhododendron simsii HOM05D006176 ORTHO05D007346 8.6e-24 114.0 125 49.6
Oeu043644.1 Olea europaea HOM05D006176 ORTHO05D007346 1.5e-23 113.2 111 48.6
Migut.I01087 Erythranthe guttata HOM05D006176 ORTHO05D007346 2.5e-23 112.5 118 48.3
Sabra03G0039100 Salix brachista HOM05D006176 ORTHO05D007346 1.2e-22 110.2 119 51.3
SGA_v2.0_scaffold122G33347 Striga asiatica HOM05D006176 ORTHO05D007346 1.2e-22 110.2 115 47.8
vmacro22033 Vaccinium macrocarpon HOM05D006176 ORTHO05D007346 1.2e-22 110.2 94 58.5
TAR624G0214 Trochodendron aralioides HOM05D006176 ORTHO05D007346 2.1e-22 109.4 104 53.8
PGSC0003DMG400004890 Solanum tuberosum HOM05D006176 ORTHO05D007346 1.1e-21 107.1 116 45.7
Oeu000400.1 Olea europaea HOM05D006176 ORTHO05D007346 1.8e-21 106.3 104 51.0
Aqoxy2G03952 Aquilegia oxysepala HOM05D006176 ORTHO05D007346 2.4e-21 105.9 104 50.0
Lsat_1_v5_gn_4_94161 Lactuca sativa HOM05D006176 ORTHO05D007346 3.1e-21 105.5 122 47.5
Sopen06g022380 Solanum pennellii HOM05D006176 ORTHO05D007346 6.8e-21 104.4 102 47.1
PSO421G0391 Papaver somniferum HOM05D006176 ORTHO05D007346 1.5e-20 103.2 109 52.3
CANSAT56G3952 Cannabis sativa HOM05D006176 ORTHO05D007346 2.0e-20 102.8 114 50.0
Ciclev10027265m.g Citrus clementina HOM05D006176 ORTHO05D007346 4.4e-20 101.7 98 53.1
THA.LOC104810370 Tarenaya hassleriana HOM05D006176 ORTHO05D007346 5.8e-20 101.3 111 53.2
QL05p004031 Quercus lobata HOM05D006176 ORTHO05D007346 2.9e-19 99.0 116 50.9
Solyc06g062930.1 Solanum lycopersicum HOM05D006176 ORTHO05D007346 3.8e-19 98.6 126 41.3
Cpa.g.c40357 Carica papaya HOM05D006176 ORTHO05D007346 4.9e-19 98.2 113 47.8
PGR102G2654 Punica granatum HOM05D006176 ORTHO05D007346 4.9e-19 98.2 100 58.0
CARHR044470 Cardamine hirsuta HOM05D006176 ORTHO05D007346 6.4e-19 97.8 109 51.4
Migut.D00934 Erythranthe guttata HOM05D006176 ORTHO05D007346 6.4e-19 97.8 113 46.9
MBI19_g09833_MAGBIO Magnolia biondii HOM05D006176 ORTHO05D007346 6.4e-19 97.8 113 46.0
Carub.0001s4336 Capsella rubella HOM05D006176 ORTHO05D007346 2.4e-18 95.9 102 52.9
DCAR_022691 Daucus carota HOM05D006176 ORTHO05D007346 3.2e-18 95.5 99 51.5
Sc12g0010640 Simmondsia chinensis HOM05D006176 ORTHO05D007346 3.2e-18 95.5 98 52.0
Aa31LG10G1290 Aethionema arabicum HOM05D006176 ORTHO05D007346 5.4e-18 94.7 107 52.3
AT1G54120 Arabidopsis thaliana HOM05D006176 ORTHO05D007346 5.4e-18 94.7 103 50.5
THA.LOC104822658 Tarenaya hassleriana HOM05D006176 ORTHO05D007346 5.4e-18 94.7 119 45.4
Lalb_Chr04g0263581 Lupinus albus HOM05D006176 ORTHO05D007346 7.1e-18 94.4 124 48.4
Sp3g12300 Schrenkiella parvula HOM05D006176 ORTHO05D007346 7.1e-18 94.4 123 49.6
Lalb_Chr04g0261121 Lupinus albus HOM05D006176 ORTHO05D007346 9.2e-18 94.0 116 49.1
Thhalv10011868m.g Eutrema salsugineum HOM05D006176 ORTHO05D007346 2.1e-17 92.8 118 46.6
AL1G62840 Arabidopsis lyrata HOM05D006176 ORTHO05D007346 3.5e-17 92.0 105 49.5
Psat4g168640 Pisum sativum HOM05D006176 ORTHO05D007346 3.5e-17 92.0 74 59.5
PSO063G0286 Papaver somniferum HOM05D006176 ORTHO05D007346 4.6e-17 91.7 104 50.0
CARHR088900 Cardamine hirsuta HOM05D006176 ORTHO05D007346 6.0e-17 91.3 123 48.0
Aa31LG8G1260 Aethionema arabicum HOM05D006176 ORTHO05D007346 1.0e-16 90.5 116 47.4
MBI13_g35417_MAGBIO Magnolia biondii HOM05D006176 ORTHO05D007346 1.0e-16 90.5 125 35.2
Sp1g40570 Schrenkiella parvula HOM05D006176 ORTHO05D007346 1.3e-16 90.1 105 49.5
C06p15630 Brassica napus HOM05D006176 ORTHO05D007346 3.9e-16 88.6 102 48.0
Thhalv10021772m.g Eutrema salsugineum HOM05D006176 ORTHO05D007346 3.9e-16 88.6 123 49.6
Peaxi162Scf00038g02015 Petunia axillaris HOM05D006176 ORTHO05D007346 3.9e-16 88.6 91 49.5
A08p01210 Brassica napus HOM05D006176 ORTHO05D007346 5.1e-16 88.2 118 44.1
BraA08t32172Z Brassica rapa HOM05D006176 ORTHO05D007346 5.1e-16 88.2 118 44.1
BcaB07g33263 Brassica carinata HOM05D006176 ORTHO05D007346 6.6e-16 87.8 102 48.0
Sed0000884 Sechium edule HOM05D006176 ORTHO05D007346 8.7e-16 87.4 106 42.5
BcaB02g10861 Brassica carinata HOM05D006176 ORTHO05D007346 1.1e-15 87.0 99 50.5
BcaB04g17025 Brassica carinata HOM05D006176 ORTHO05D007346 1.1e-15 87.0 102 48.0
BcaC08g43592 Brassica carinata HOM05D006176 ORTHO05D007346 1.5e-15 86.7 118 44.9
C06p09900 Brassica napus HOM05D006176 ORTHO05D007346 1.5e-15 86.7 118 44.9
BolC6t36062H Brassica oleracea HOM05D006176 ORTHO05D007346 1.5e-15 86.7 118 44.9
Sopen03g041090 Solanum pennellii HOM05D006176 ORTHO05D007346 1.9e-15 86.3 120 40.8
BraA06t23268Z Brassica rapa HOM05D006176 ORTHO05D007346 2.5e-15 85.9 102 47.1
A06p00540 Brassica napus HOM05D006176 ORTHO05D007346 3.3e-15 85.5 102 47.1
AT3G14060 Arabidopsis thaliana HOM05D006176 ORTHO05D007346 5.6e-15 84.7 123 47.2
SGA_v2.0_scaffold4G02067 Striga asiatica HOM05D006176 ORTHO05D007346 9.6e-15 84.0 87 49.4
BcaC01g01436 Brassica carinata HOM05D006176 ORTHO05D007346 2.8e-14 82.4 102 46.1
C03p92010 Brassica napus HOM05D006176 ORTHO05D007346 2.8e-14 82.4 102 46.1
BolC3t21519H Brassica oleracea HOM05D006176 ORTHO05D007346 2.8e-14 82.4 102 46.1
Lalb_Chr14g0361931 Lupinus albus HOM05D006176 ORTHO05D007346 2.8e-14 82.4 116 44.0
AL3G26260 Arabidopsis lyrata HOM05D006176 ORTHO05D007346 4.8e-14 81.6 123 45.5
MSTRG.10943 Avicennia marina HOM05D006176 ORTHO05D007346 6.2e-14 81.3 103 42.7
ClCG07G014560 Citrullus lanatus HOM05D006176 ORTHO05D007346 1.1e-13 80.5 98 41.8
Lsat_1_v5_gn_5_136361 Lactuca sativa HOM05D006176 ORTHO05D007346 4.0e-13 78.6 95 46.3
Nitab4.5_0000189g0110 Nicotiana tabacum HOM05D006176 ORTHO05D007346 4.0e-13 78.6 83 49.4
Carub.0003s1365 Capsella rubella HOM05D006176 ORTHO05D007346 5.3e-13 78.2 123 43.9
PGSC0003DMG400022907 Solanum tuberosum HOM05D006176 ORTHO05D007346 6.9e-13 77.8 96 40.6
BolC6t36752H Brassica oleracea HOM05D006176 ORTHO05D007346 2.0e-12 76.3 88 47.7
MELO3C022667.2 Cucumis melo HOM05D006176 ORTHO05D007346 4.4e-12 75.1 92 41.3
A01p39590 Brassica napus HOM05D006176 ORTHO05D007346 7.6e-12 74.3 103 45.6
BraA01t03999Z Brassica rapa HOM05D006176 ORTHO05D007346 7.6e-12 74.3 103 45.6
BcaNung04891 Brassica carinata HOM05D006176 ORTHO05D007346 1.7e-11 73.2 103 45.6
C01p50530 Brassica napus HOM05D006176 ORTHO05D007346 1.7e-11 73.2 103 45.6
CsaV3_3G030710 Cucumis sativus L. HOM05D006176 ORTHO05D007346 1.7e-11 73.2 92 40.2
BolC1t05004H Brassica oleracea HOM05D006176 ORTHO05D007346 3.8e-11 72.0 103 44.7
PGSC0003DMG400004373 Solanum tuberosum HOM05D006176 ORTHO05D007346 8.4e-11 70.9 103 40.8
MSTRG.10944 Avicennia marina HOM05D006176 ORTHO05D007346 1.9e-10 69.7 95 46.3
BcaC08g44161 Brassica carinata HOM05D006176 ORTHO05D007346 4.2e-10 68.6 98 39.8
ECA234G1437 Erigeron canadensis HOM05D006176 ORTHO05D007346 9.3e-10 67.4 111 42.3
Sed0005659 Sechium edule HOM05D006176 ORTHO05D007346 9.3e-10 67.4 101 39.6
HanXRQChr12g0360401 Helianthus annuus HOM05D006176 ORTHO05D007346 1.6e-09 66.6 70 44.3
SalBow6G3428 Salvia bowleyana HOM05D006176 ORTHO05D007346 3.5e-09 65.5 50 52.0
Nitab4.5_0005192g0040 Nicotiana tabacum HOM05D006176 ORTHO05D007346 5.1e-08 61.6 81 45.7
CDE07G1640 Ceratophyllum demersum HOM05D006176 ORTHO05D007346 2.5e-07 59.3 99 36.4
PGSC0003DMG400016086 Solanum tuberosum HOM05D021761 ORTHO05D007346 3.6e-06 55.5 101 37.6
PGSC0003DMG400016087 Solanum tuberosum HOM05D021761 ORTHO05D007346 6.2e-06 54.7 98 37.8


User provided reference genes

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