Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G142200 Manihot esculenta HOM05D004436 ORTHO05D005179 4.3e-281 970.7 501 100.0
Manes.11G023100 Manihot esculenta HOM05D004436 ORTHO05D005179 6.2e-195 684.5 508 72.8
Potri.001G198600 Populus trichocarpa HOM05D004436 ORTHO05D005179 1.2e-153 547.4 462 62.8
Sabra01G0155800 Salix brachista HOM05D004436 ORTHO05D005179 2.0e-145 520.0 475 59.8
CiPaw.05G181900 Carya illinoinensis HOM05D004436 ORTHO05D005179 3.1e-130 469.5 421 60.1
CiPaw.01G221800 Carya illinoinensis HOM05D004436 ORTHO05D005179 4.1e-130 469.2 421 59.4
GSVIVG01016817001 Vitis vinifera HOM05D004436 ORTHO05D005179 5.3e-122 442.2 416 57.0
Cpa.g.sc25.86 Carica papaya HOM05D004436 ORTHO05D005179 1.6e-118 430.6 416 56.5
ClCG09G000840 Citrullus lanatus HOM05D004436 ORTHO05D005179 6.1e-118 428.7 423 56.3
Ciclev10025597m.g Citrus clementina HOM05D004436 ORTHO05D005179 8.0e-118 428.3 420 54.8
Actinidia32167 Actinidia chinensis HOM05D004436 ORTHO05D005179 1.8e-117 427.2 422 54.7
Eucgr.F03167 Eucalyptus grandis HOM05D004436 ORTHO05D005179 2.3e-117 426.8 411 56.2
TWI23G0436 Tripterygium wilfordii HOM05D004436 ORTHO05D005179 3.0e-117 426.4 423 55.8
CsaV3_7G034640 Cucumis sativus L. HOM05D004436 ORTHO05D005179 8.8e-117 424.9 418 56.7
Sed0007780 Sechium edule HOM05D004436 ORTHO05D005179 1.2e-116 424.5 423 55.3
Thecc.03G227200 Theobroma cacao HOM05D004436 ORTHO05D005179 9.7e-116 421.4 469 50.7
MELO3C024372.2 Cucumis melo HOM05D004436 ORTHO05D005179 3.7e-115 419.5 418 55.5
Dinv03512 Davidia involucrata HOM05D004436 ORTHO05D005179 6.3e-115 418.7 418 54.1
Hma1.2p1_0496F.1_g166100 Hydrangea macrophylla HOM05D004436 ORTHO05D005179 1.1e-114 417.9 421 56.1
TAR375G0086 Trochodendron aralioides HOM05D004436 ORTHO05D005179 1.4e-114 417.5 418 54.3
Haze_15997 Corylus avellana HOM05D004436 ORTHO05D005179 5.3e-114 415.6 458 50.7
CSS0015890 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 5.0e-112 409.1 417 54.4
Duzib205G0267 Durio zibethinus HOM05D004436 ORTHO05D005179 8.5e-112 408.3 465 50.3
vmacro22224 Vaccinium macrocarpon HOM05D004436 ORTHO05D005179 9.4e-111 404.8 419 54.2
Prupe.3G044800 Prunus persica HOM05D004436 ORTHO05D005179 2.7e-110 403.3 420 51.7
Atru.chr1.3808 Acer truncatum HOM05D004436 ORTHO05D005179 4.7e-110 402.5 381 55.9
Dinv30366 Davidia involucrata HOM05D004436 ORTHO05D005179 1.0e-109 401.4 346 60.1
Lj6g0016044 Lotus japonicus HOM05D004436 ORTHO05D005179 1.4e-109 401.0 474 47.0
PGSC0003DMG400016304 Solanum tuberosum HOM05D004436 ORTHO05D005179 4.0e-109 399.4 419 53.0
Sed0020704 Sechium edule HOM05D004436 ORTHO05D005179 8.8e-109 398.3 417 54.2
COL.COLO4_30482 Corchorus olitorius HOM05D004436 ORTHO05D005179 1.5e-108 397.5 429 52.2
MD09G1187900 Malus domestica HOM05D004436 ORTHO05D005179 4.4e-108 396.0 417 51.8
Rhsim08G0236100 Rhododendron simsii HOM05D004436 ORTHO05D005179 9.8e-108 394.8 423 51.1
Sopen06g018390 Solanum pennellii HOM05D004436 ORTHO05D005179 1.3e-107 394.4 419 52.3
Lj5A40G74 Lonicera japonica HOM05D004436 ORTHO05D005179 2.2e-107 393.7 419 52.3
CSS0033207 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 1.8e-106 390.6 417 53.0
RcHm_v2.0_Chr2g0144531 Rosa chinensis HOM05D004436 ORTHO05D005179 1.6e-105 387.5 459 47.5
Glyma.15G165300 Glycine max HOM05D004436 ORTHO05D005179 3.5e-105 386.3 413 51.8
Solyc06g053330.4 Solanum lycopersicum HOM05D004436 ORTHO05D005179 7.7e-105 385.2 457 49.0
Gohir.D03G171700 Gossypium hirsutum HOM05D004436 ORTHO05D005179 2.3e-104 383.6 454 48.2
Aa31LG8G1130 Aethionema arabicum HOM05D004436 ORTHO05D005179 1.5e-103 380.9 430 49.1
Gorai.003G182300 Gossypium raimondii HOM05D004436 ORTHO05D005179 1.9e-103 380.6 455 48.4
PGR119G1065 Punica granatum HOM05D004436 ORTHO05D005179 1.9e-103 380.6 430 49.5
CANSAT56G1493 Cannabis sativa HOM05D004436 ORTHO05D005179 3.3e-103 379.8 420 51.4
FAN02G3564 Fragaria x ananassa HOM05D004436 ORTHO05D005179 4.2e-103 379.4 428 48.4
COL.COLO4_17027 Corchorus olitorius HOM05D004436 ORTHO05D005179 7.2e-103 378.6 350 57.1
Nitab4.5_0000035g0090 Nicotiana tabacum HOM05D004436 ORTHO05D005179 6.1e-102 375.6 480 47.3
Gohir.A03G000500 Gossypium hirsutum HOM05D004436 ORTHO05D005179 8.0e-102 375.2 467 47.1
Thhalv10020760m.g Eutrema salsugineum HOM05D004436 ORTHO05D005179 1.0e-101 374.8 418 48.1
Oeu044709.1 Olea europaea HOM05D004436 ORTHO05D005179 1.4e-101 374.4 418 49.5
FAN05G5343 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.3e-101 373.6 428 47.7
FvH4_6g34180 Fragaria vesca HOM05D004436 ORTHO05D005179 6.8e-101 372.1 457 46.2
FAN09G2135 Fragaria x ananassa HOM05D004436 ORTHO05D005179 8.9e-101 371.7 428 47.9
CAN.G540.4 Capsicum annuum HOM05D004436 ORTHO05D005179 1.2e-100 371.3 486 46.3
Lalb_Chr08g0233321 Lupinus albus HOM05D004436 ORTHO05D005179 2.0e-100 370.5 454 47.4
THA.LOC104804933 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 2.0e-100 370.5 418 49.0
Peaxi162Scf00943g00014 Petunia axillaris HOM05D004436 ORTHO05D005179 2.6e-100 370.2 425 48.5
Oeu047041.1 Olea europaea HOM05D004436 ORTHO05D005179 9.8e-100 368.2 411 49.6
Peaxi162Scf00647g00219 Petunia axillaris HOM05D004436 ORTHO05D005179 1.7e-99 367.5 420 48.8
Nitab4.5_0012713g0010 Nicotiana tabacum HOM05D004436 ORTHO05D005179 4.9e-99 365.9 421 50.4
Sp3g12180 Schrenkiella parvula HOM05D004436 ORTHO05D005179 6.3e-99 365.5 467 44.8
MSTRG.22562 Avicennia marina HOM05D004436 ORTHO05D005179 4.1e-98 362.8 461 46.0
Sc12g0010440 Simmondsia chinensis HOM05D004436 ORTHO05D005179 9.2e-98 361.7 418 49.0
FAN26G0630 Fragaria x ananassa HOM05D004436 ORTHO05D005179 7.8e-97 358.6 412 48.5
Lsat_1_v5_gn_5_135221 Lactuca sativa HOM05D004436 ORTHO05D005179 1.3e-96 357.8 465 47.3
HanXRQChr10g0312341 Helianthus annuus HOM05D004436 ORTHO05D005179 2.3e-96 357.1 423 49.4
FAN14G2695 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.9e-96 356.7 493 42.8
Ca_02096_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 1.1e-95 354.8 415 48.2
DCAR_026403 Daucus carota HOM05D004436 ORTHO05D005179 1.5e-95 354.4 417 46.3
Phvul.009G236700 Phaseolus vulgaris HOM05D004436 ORTHO05D005179 5.6e-95 352.4 418 49.0
Carub.0003s1351 Capsella rubella HOM05D004436 ORTHO05D005179 9.5e-95 351.7 452 43.1
ECA234G4408 Erigeron canadensis HOM05D004436 ORTHO05D005179 1.2e-94 351.3 406 50.5
RcHm_v2.0_Chr2g0166351 Rosa chinensis HOM05D004436 ORTHO05D005179 8.0e-94 348.6 425 47.1
Cc04_g01610 Coffea canephora HOM05D004436 ORTHO05D005179 1.0e-93 348.2 317 57.1
A01p39710 Brassica napus HOM05D004436 ORTHO05D005179 2.3e-93 347.1 429 46.6
AL3G26120 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 5.2e-93 345.9 458 43.7
BraA01t04010Z Brassica rapa HOM05D004436 ORTHO05D005179 2.6e-92 343.6 439 45.8
BcaC09g48383 Brassica carinata HOM05D004436 ORTHO05D005179 3.4e-92 343.2 430 46.3
C01p50660 Brassica napus HOM05D004436 ORTHO05D005179 3.4e-92 343.2 430 46.3
BolC1t05015H Brassica oleracea HOM05D004436 ORTHO05D005179 3.4e-92 343.2 430 46.3
CARHR088750 Cardamine hirsuta HOM05D004436 ORTHO05D005179 3.4e-92 343.2 437 43.7
TPR.G13789 Trifolium pratense HOM05D004436 ORTHO05D005179 2.2e-91 340.5 428 47.7
SGA_v2.0_scaffold68G22895 Striga asiatica HOM05D004436 ORTHO05D005179 1.4e-90 337.8 408 47.5
AT3G13940 Arabidopsis thaliana HOM05D004436 ORTHO05D005179 1.9e-90 337.4 459 42.3
arahy.Tifrunner.gnm1.ann1.4RDH3B Arachis hypogaea HOM05D004436 ORTHO05D005179 3.2e-90 336.7 422 46.2
arahy.Tifrunner.gnm1.ann1.0TY6IG Arachis hypogaea HOM05D004436 ORTHO05D005179 4.1e-90 336.3 422 46.4
Medtr2g037880 Medicago truncatula HOM05D004436 ORTHO05D005179 7.0e-90 335.5 423 45.2
Migut.D00948 Erythranthe guttata HOM05D004436 ORTHO05D005179 9.2e-90 335.1 462 43.9
FvH4_6g47280 Fragaria vesca HOM05D004436 ORTHO05D005179 9.2e-90 335.1 440 44.5
QL05p009436 Quercus lobata HOM05D004436 ORTHO05D005179 2.0e-89 334.0 624 35.9
Hund20819 Selenicereus undatus HOM05D004436 ORTHO05D005179 2.7e-89 333.6 465 43.2
Medtr7g104810 Medicago truncatula HOM05D004436 ORTHO05D005179 1.7e-88 330.9 422 44.5
BcaB04g20967 Brassica carinata HOM05D004436 ORTHO05D005179 3.3e-87 326.6 433 44.6
Rhsim10G0150900 Rhododendron simsii HOM05D004436 ORTHO05D005179 5.6e-87 325.9 557 40.2
Psat1g144000 Pisum sativum HOM05D004436 ORTHO05D005179 1.2e-86 324.7 417 44.6
Aqoxy2G00706 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.6e-86 324.3 420 44.3
Actinidia21779 Actinidia chinensis HOM05D004436 ORTHO05D005179 1.5e-84 317.8 420 44.8
EL10Ac7g16380 Beta vulgaris HOM05D004436 ORTHO05D005179 1.7e-83 314.3 419 42.0
PSO724G1089 Papaver somniferum HOM05D004436 ORTHO05D005179 2.9e-83 313.5 428 42.3
PSO135G0558 Papaver somniferum HOM05D004436 ORTHO05D005179 3.7e-83 313.2 428 41.8
EL10Ac7g16378 Beta vulgaris HOM05D004436 ORTHO05D005179 2.4e-82 310.5 419 41.8
Medtr2g037460 Medicago truncatula HOM05D004436 ORTHO05D005179 3.2e-82 310.1 413 44.3
CDE07G0038 Ceratophyllum demersum HOM05D004436 ORTHO05D005179 5.4e-82 309.3 449 43.0
AUR62009860 Chenopodium quinoa HOM05D004436 ORTHO05D005179 1.2e-81 308.1 415 41.0
Ah.07g197300 Amaranthus hybridus HOM05D004436 ORTHO05D005179 2.1e-78 297.4 415 42.9
MD17G1172300 Malus domestica HOM05D004436 ORTHO05D005179 2.8e-78 297.0 331 49.2
AUR62001510 Chenopodium quinoa HOM05D004436 ORTHO05D005179 4.0e-77 293.1 441 38.1
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 4.4e-76 289.7 464 40.5
Peaxi162Scf00060g02815 Petunia axillaris HOM05D004436 ORTHO05D005179 6.0e-73 279.3 460 39.3
FAN24G2018 Fragaria x ananassa HOM05D004436 ORTHO05D005179 4.0e-69 266.5 408 40.2
Lj6g0018808 Lotus japonicus HOM05D004436 ORTHO05D005179 7.6e-68 262.3 239 56.5
FvH4_2g14600 Fragaria vesca HOM05D004436 ORTHO05D005179 1.3e-67 261.5 296 49.0
Nitab4.5_0004287g0020 Nicotiana tabacum HOM05D004436 ORTHO05D005179 3.8e-67 260.0 421 40.9
ATR0762G049 Amborella trichopoda HOM05D004436 ORTHO05D005179 6.4e-67 259.2 442 38.9
Nn6g35749 Nelumbo nucifera HOM05D004436 ORTHO05D005179 4.2e-66 256.5 418 40.2
HPP92_009424 Vanilla planifolia HOM05D004436 ORTHO05D005179 4.2e-66 256.5 426 41.5
Carub.0003s3547 Capsella rubella HOM05D004436 ORTHO05D005179 1.9e-58 231.1 352 39.5
TPR.G16505 Trifolium pratense HOM05D004436 ORTHO05D005179 4.3e-55 219.9 218 51.4
Zm00001eb166800 Zea mays HOM05D004436 ORTHO05D005179 1.1e-53 215.3 419 37.7
Ca_27339_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 4.5e-52 209.9 250 48.0
Ah.08g216510 Amaranthus hybridus HOM05D004436 ORTHO05D005179 6.0e-49 199.5 309 40.5
Os11g0615100 Oryza sativa ssp. japonica HOM05D004436 ORTHO05D005179 3.7e-46 190.3 422 36.5
THA.LOC104822769 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 1.5e-44 184.9 300 41.0
FAN14G5104 Fragaria x ananassa HOM05D002326 ORTHO05D005179 1.0e-43 182.2 230 43.9
Pp3c8_24340 Physcomitrium patens HOM05D004436 ORTHO05D005179 3.8e-43 180.3 454 31.1
AagrBONN_evm.TU.Sc2ySwM_368.2707 Anthoceros agrestis HOM05D004436 ORTHO05D005179 4.9e-43 179.9 465 30.8
DCAR_023423 Daucus carota HOM05D004436 ORTHO05D005179 6.5e-43 179.5 236 45.3
Aqoxy7G00272 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 6.0e-41 172.9 241 40.7
FAN27G1625 Fragaria x ananassa HOM05D004436 ORTHO05D005179 8.7e-40 169.1 391 33.2
SEGI_28110 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 1.6e-38 164.9 319 35.4
SEGI_22335 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 1.9e-34 151.4 337 33.2
Aqoxy2G02914 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 7.1e-34 149.4 140 57.9
FAN20G3048 Fragaria x ananassa HOM05D004436 ORTHO05D005179 3.3e-31 140.6 243 37.0
FAN09G3702 Fragaria x ananassa HOM05D002326 ORTHO05D005179 7.4e-31 139.4 450 29.6
FAN02G4131 Fragaria x ananassa HOM05D002326 ORTHO05D005179 1.4e-29 135.2 451 29.3
Haze_06394 Corylus avellana HOM05D004436 ORTHO05D005179 3.4e-28 130.6 184 44.6
CBR_g45967 Chara braunii HOM05D004436 ORTHO05D005179 3.8e-27 127.1 432 27.3
FAN15G1241 Fragaria x ananassa HOM05D004436 ORTHO05D005179 6.5e-27 126.3 411 26.8
Oeu004353.1 Olea europaea HOM05D004436 ORTHO05D005179 3.6e-25 120.6 110 54.5
Mapoly0063s0055 Marchantia polymorpha HOM05D004436 ORTHO05D005179 3.9e-24 117.1 342 29.5
Dinv21190 Davidia involucrata HOM05D004436 ORTHO05D005179 9.7e-23 112.5 108 55.6
ATR0185G001 Amborella trichopoda HOM05D004436 ORTHO05D005179 1.7e-22 111.7 163 41.7
AUR62000997 Chenopodium quinoa HOM05D004436 ORTHO05D005179 3.1e-21 107.5 174 39.1
THA.LOC104822775 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 6.9e-21 106.3 156 41.0
PGSC0003DMG400002436 Solanum tuberosum HOM05D004436 ORTHO05D005179 1.0e-19 102.4 151 39.7
AL1G64440 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 6.5e-19 99.8 154 37.7
TPR.G16496 Trifolium pratense HOM05D004436 ORTHO05D005179 2.5e-18 97.8 195 35.4
Aqoxy2G02915 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 3.3e-15 87.4 131 38.9
Psat6g077080 Pisum sativum HOM05D001891 ORTHO05D005832 7.0e-13 79.7 115 39.1
Psat6g077120 Pisum sativum HOM05D001891 ORTHO05D005832 7.0e-13 79.7 115 39.1
Oeu027301.1 Olea europaea HOM05D004436 ORTHO05D005179 5.9e-12 76.6 151 38.4
Peaxi162Scf01131g00007 Petunia axillaris HOM05D004436 ORTHO05D005179 6.5e-11 73.2 130 36.9
SEGI_36774 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 2.7e-09 67.8 128 32.0
Ca_02098_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 4.4e-07 60.5 164 27.4
SMO144G0124 Selaginella moellendorffii HOM05D004436 ORTHO05D005179 3.7e-06 57.4 114 36.0


User provided reference genes

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