Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G139100 Manihot esculenta HOM05D005904 ORTHO05D007074 1.9e-117 426.0 236 100.0
Sabra01G0156900 Salix brachista HOM05D005904 ORTHO05D007074 5.1e-83 311.6 224 73.2
Potri.001G200300 Populus trichocarpa HOM05D005904 ORTHO05D007074 7.4e-82 307.8 228 71.5
QL05p012810 Quercus lobata HOM05D005904 ORTHO05D007074 7.4e-82 307.8 236 69.5
TWI31G1228 Tripterygium wilfordii HOM05D005904 ORTHO05D007074 2.2e-81 306.2 226 68.1
MELO3C013052.2 Cucumis melo HOM05D005904 ORTHO05D007074 4.8e-81 305.1 238 69.7
Dinv30384 Davidia involucrata HOM05D005904 ORTHO05D007074 1.4e-80 303.5 232 74.6
CsaV3_3G043900 Cucumis sativus L. HOM05D005904 ORTHO05D007074 1.8e-80 303.1 238 69.3
CiPaw.02G140600 Carya illinoinensis HOM05D005904 ORTHO05D007074 3.1e-80 302.4 235 72.3
CSS0014810 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 4.1e-80 302.0 221 70.6
CANSAT56G1468 Cannabis sativa HOM05D005904 ORTHO05D007074 1.2e-79 300.4 244 66.0
ClCG07G013710 Citrullus lanatus HOM05D005904 ORTHO05D007074 1.5e-79 300.1 238 69.3
Actinidia21754 Actinidia chinensis HOM05D005904 ORTHO05D007074 9.4e-77 290.8 225 72.0
Cpa.g.sc25.58 Carica papaya HOM05D005904 ORTHO05D007074 1.2e-76 290.4 223 67.7
Gorai.011G065700 Gossypium raimondii HOM05D005904 ORTHO05D007074 4.6e-76 288.5 238 64.7
Sed0023540 Sechium edule HOM05D005904 ORTHO05D007074 1.0e-75 287.3 232 66.8
Glyma.15G023700 Glycine max HOM05D005904 ORTHO05D007074 1.8e-75 286.6 237 64.6
HanXRQChr10g0310911 Helianthus annuus HOM05D005904 ORTHO05D007074 1.8e-75 286.6 224 67.4
Gohir.A10G060500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 2.3e-75 286.2 231 65.4
Cc07_g04610 Coffea canephora HOM05D005904 ORTHO05D007074 6.7e-75 284.6 227 66.1
Thecc.06G110900 Theobroma cacao HOM05D005904 ORTHO05D007074 6.7e-75 284.6 230 65.7
THA.LOC104810344 Tarenaya hassleriana HOM05D005904 ORTHO05D007074 1.1e-74 283.9 232 65.1
Lsat_1_v5_gn_5_134821 Lactuca sativa HOM05D005904 ORTHO05D007074 2.0e-74 283.1 237 65.4
MD09G1194100 Malus domestica HOM05D005904 ORTHO05D007074 2.5e-74 282.7 231 70.1
Duzib235G0974 Durio zibethinus HOM05D005904 ORTHO05D007074 3.3e-74 282.3 227 68.7
Gohir.D10G061500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 3.3e-74 282.3 238 63.4
GSVIVG01016848001 Vitis vinifera HOM05D005904 ORTHO05D007074 3.3e-74 282.3 222 66.7
VMungo1080G0888 Vigna mungo HOM05D005904 ORTHO05D007074 7.4e-74 281.2 236 63.1
Lj3g0018823 Lotus japonicus HOM05D005904 ORTHO05D007074 9.7e-74 280.8 235 67.7
arahy.Tifrunner.gnm1.ann1.LV1MMJ Arachis hypogaea HOM05D005904 ORTHO05D007074 1.3e-73 280.4 228 64.5
PGR044G1952 Punica granatum HOM05D005904 ORTHO05D007074 4.8e-73 278.5 231 65.4
Eucgr.F03129 Eucalyptus grandis HOM05D005904 ORTHO05D007074 6.3e-73 278.1 218 67.0
AL3G25790 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 8.2e-73 277.7 232 64.2
Prupe.3G050600 Prunus persica HOM05D005904 ORTHO05D007074 8.2e-73 277.7 251 64.9
arahy.Tifrunner.gnm1.ann1.21ET8L Arachis hypogaea HOM05D005904 ORTHO05D007074 1.1e-72 277.3 233 63.5
Medtr2g100220 Medicago truncatula HOM05D005904 ORTHO05D007074 1.1e-72 277.3 227 67.8
AT3G13740 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 1.4e-72 276.9 232 65.5
RcHm_v2.0_Chr6g0267021 Rosa chinensis HOM05D005904 ORTHO05D007074 1.8e-72 276.6 245 61.6
ECA234G0674 Erigeron canadensis HOM05D005904 ORTHO05D007074 2.4e-72 276.2 235 64.7
Psat5g293640 Pisum sativum HOM05D005904 ORTHO05D007074 5.3e-72 275.0 232 62.9
Carub.0003s1326 Capsella rubella HOM05D005904 ORTHO05D007074 1.2e-71 273.9 225 63.1
Phvul.005G160100 Phaseolus vulgaris HOM05D005904 ORTHO05D007074 2.0e-71 273.1 236 62.3
A05p35680 Brassica napus HOM05D005904 ORTHO05D007074 2.6e-71 272.7 231 62.8
BraA05t22375Z Brassica rapa HOM05D005904 ORTHO05D007074 2.6e-71 272.7 231 62.8
BolC5t34074H Brassica oleracea HOM05D005904 ORTHO05D007074 4.5e-71 271.9 232 63.4
Rhsim08G0232900 Rhododendron simsii HOM05D005904 ORTHO05D007074 4.5e-71 271.9 231 66.2
Aa31LG8G920 Aethionema arabicum HOM05D005904 ORTHO05D007074 7.7e-71 271.2 230 63.0
BcaNung06385 Brassica carinata HOM05D005904 ORTHO05D007074 1.3e-70 270.4 232 63.4
C05p54090 Brassica napus HOM05D005904 ORTHO05D007074 1.3e-70 270.4 232 63.4
Thhalv10021279m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 1.3e-70 270.4 232 63.8
Thhalv10011744m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 2.9e-70 269.2 235 61.7
Sc12g0010220 Simmondsia chinensis HOM05D005904 ORTHO05D007074 3.8e-70 268.9 237 63.3
BcaB06g25441 Brassica carinata HOM05D005904 ORTHO05D007074 8.5e-70 267.7 232 62.5
Sp3g11940 Schrenkiella parvula HOM05D005904 ORTHO05D007074 8.5e-70 267.7 232 61.2
Solyc03g121530.3 Solanum lycopersicum HOM05D005904 ORTHO05D007074 1.9e-69 266.5 222 64.4
Aa31LG10G930 Aethionema arabicum HOM05D005904 ORTHO05D007074 2.5e-69 266.2 232 62.1
Nn6g35465 Nelumbo nucifera HOM05D005904 ORTHO05D007074 4.2e-69 265.4 240 59.6
FAN07G2466 Fragaria x ananassa HOM05D005904 ORTHO05D007074 5.5e-69 265.0 247 61.1
TAR383G0617 Trochodendron aralioides HOM05D005904 ORTHO05D007074 7.2e-69 264.6 232 62.5
Ah.08g216180 Amaranthus hybridus HOM05D005904 ORTHO05D007074 9.4e-69 264.2 236 65.3
Carub.0001s4364 Capsella rubella HOM05D005904 ORTHO05D007074 1.2e-68 263.8 234 61.1
CAN.G1389.13 Capsicum annuum HOM05D005904 ORTHO05D007074 2.7e-68 262.7 218 71.1
FvH4_4g12940 Fragaria vesca HOM05D005904 ORTHO05D007074 2.7e-68 262.7 247 60.7
Sp1g40800 Schrenkiella parvula HOM05D005904 ORTHO05D007074 6.1e-68 261.5 235 63.0
AL1G63140 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 7.9e-68 261.2 235 60.9
BraA08t32149Z Brassica rapa HOM05D005904 ORTHO05D007074 1.0e-67 260.8 235 59.1
Hund18723 Selenicereus undatus HOM05D005904 ORTHO05D007074 1.8e-67 260.0 231 62.8
AT1G55140 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 3.0e-67 259.2 235 60.0
A08p00940 Brassica napus HOM05D005904 ORTHO05D007074 3.0e-67 259.2 235 58.7
Nitab4.5_0001295g0010 Nicotiana tabacum HOM05D005904 ORTHO05D007074 3.0e-67 259.2 230 62.6
Lj5A45T77 Lonicera japonica HOM05D005904 ORTHO05D007074 5.1e-67 258.5 236 57.2
Ciclev10026243m.g Citrus clementina HOM05D005904 ORTHO05D007074 1.1e-66 257.3 205 69.3
Lalb_Chr24g0396341 Lupinus albus HOM05D005904 ORTHO05D007074 1.1e-66 257.3 245 58.0
C03p92270 Brassica napus HOM05D005904 ORTHO05D007074 2.6e-66 256.1 233 59.7
Oeu039966.1 Olea europaea HOM05D005904 ORTHO05D007074 1.3e-65 253.8 149 81.2
Peaxi162Scf00038g01518 Petunia axillaris HOM05D005904 ORTHO05D007074 1.7e-65 253.4 154 79.2
TAR626G1971 Trochodendron aralioides HOM05D005904 ORTHO05D007074 2.8e-65 252.7 227 62.1
SalBow6G4349 Salvia bowleyana HOM05D005904 ORTHO05D007074 4.8e-65 251.9 246 56.9
BcaC01g01466 Brassica carinata HOM05D005904 ORTHO05D007074 6.3e-65 251.5 233 58.8
BolC3t21541H Brassica oleracea HOM05D005904 ORTHO05D007074 6.3e-65 251.5 233 58.8
AUR62038130 Chenopodium quinoa HOM05D005904 ORTHO05D007074 2.4e-64 249.6 243 57.6
Migut.O00807 Erythranthe guttata HOM05D005904 ORTHO05D007074 2.4e-64 249.6 225 59.6
MSTRG.22589 Avicennia marina HOM05D005904 ORTHO05D007074 3.1e-64 249.2 220 61.4
FAN12G1666 Fragaria x ananassa HOM05D005904 ORTHO05D007074 3.1e-64 249.2 277 54.5
Lj9A518G85 Lonicera japonica HOM05D005904 ORTHO05D007074 5.3e-64 248.4 238 61.3
PSO210G1067 Papaver somniferum HOM05D005904 ORTHO05D007074 9.1e-64 247.7 175 70.3
Aqoxy7G04049 Aquilegia oxysepala HOM05D005904 ORTHO05D007074 7.7e-63 244.6 171 72.5
PSO210G2600 Papaver somniferum HOM05D005904 ORTHO05D007074 7.7e-63 244.6 216 60.6
AUR62009818 Chenopodium quinoa HOM05D005904 ORTHO05D007074 1.7e-62 243.4 230 59.1
CARHR044740 Cardamine hirsuta HOM05D005904 ORTHO05D007074 2.2e-62 243.0 236 58.9
BcaB04g16991 Brassica carinata HOM05D005904 ORTHO05D007074 2.9e-62 242.7 234 58.1
CDE06G0040 Ceratophyllum demersum HOM05D005904 ORTHO05D007074 5.0e-62 241.9 235 55.7
DCAR_016164 Daucus carota HOM05D001529 ORTHO05D003309 5.0e-62 241.9 260 56.9
EL10Ac7g15769 Beta vulgaris HOM05D005904 ORTHO05D007074 6.5e-62 241.5 294 53.4
COL.COLO4_30653 Corchorus olitorius HOM05D005904 ORTHO05D007074 7.2e-61 238.0 204 63.2
DCAR_022713 Daucus carota HOM05D005904 ORTHO05D007074 3.6e-60 235.7 226 60.2
HPP92_003969 Vanilla planifolia HOM05D005904 ORTHO05D007074 4.4e-58 228.8 227 55.1
Atru.chr1.3688 Acer truncatum HOM05D005904 ORTHO05D007074 1.7e-57 226.9 228 55.7
Os11g0237700 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 2.8e-57 226.1 174 63.8
Os05g0318300 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 8.2e-57 224.6 174 63.2
Zm00001eb120860 Zea mays HOM05D005904 ORTHO05D007074 1.1e-56 224.2 174 63.8
SGA_v2.0_scaffold45G16976 Striga asiatica HOM05D005904 ORTHO05D007074 2.9e-54 216.1 214 58.9
unitig_0.g2872 Utricularia gibba HOM05D005904 ORTHO05D007074 2.5e-53 213.0 146 72.6
MBI01_g01270_MAGBIO Magnolia biondii HOM05D005904 ORTHO05D007074 3.2e-53 212.6 148 71.6
vmacro18789 Vaccinium macrocarpon HOM05D005904 ORTHO05D007074 1.5e-50 203.8 216 61.6
Nn8g38876 Nelumbo nucifera HOM05D005904 ORTHO05D007074 2.7e-47 193.0 146 66.4
Haze_15945 Corylus avellana HOM05D005904 ORTHO05D007074 5.9e-47 191.8 176 69.3
Mapoly0003s0025 Marchantia polymorpha HOM05D005904 ORTHO05D007074 5.5e-45 185.3 162 56.8
Pp3c14_13400 Physcomitrium patens HOM05D005904 ORTHO05D007074 9.4e-45 184.5 137 63.5
AagrBONN_evm.TU.Sc2ySwM_344.3620 Anthoceros agrestis HOM05D005904 ORTHO05D007074 6.1e-44 181.8 137 63.5
PGSC0003DMG400002591 Solanum tuberosum HOM05D005904 ORTHO05D007074 8.0e-44 181.4 234 47.9
AL180U10010 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 2.3e-43 179.9 232 48.3
ATR0661G556 Amborella trichopoda HOM05D005904 ORTHO05D007074 5.7e-42 175.3 139 64.7
Actinidia32143 Actinidia chinensis HOM05D005904 ORTHO05D007074 4.9e-41 172.2 186 58.1
Nitab4.5_0007429g0020 Nicotiana tabacum HOM05D005904 ORTHO05D007074 6.3e-41 171.8 166 57.8
SMO134G0002 Selaginella moellendorffii HOM05D005904 ORTHO05D007074 4.1e-40 169.1 134 60.4
SEGI_12033 Sequoiadendron giganteum HOM05D005904 ORTHO05D007074 4.5e-39 165.6 121 66.9
CBR_g18726 Chara braunii HOM05D005904 ORTHO05D007074 1.7e-38 163.7 136 54.4
CARHR088470 Cardamine hirsuta HOM05D005904 ORTHO05D007074 2.8e-36 156.4 140 58.6
FAN17G1021 Fragaria x ananassa HOM05D005904 ORTHO05D007074 1.2e-34 151.0 95 83.2
Sopen03g040340 Solanum pennellii HOM05D005904 ORTHO05D007074 8.3e-33 144.8 95 75.8
Atru.chr1.3683 Acer truncatum HOM05D005904 ORTHO05D007074 5.6e-29 132.1 128 57.0
Ca_01193_v3 Cicer arietinum L. HOM05D005904 ORTHO05D007074 2.8e-28 129.8 70 81.4
PGR044G2333 Punica granatum HOM05D005904 ORTHO05D007074 1.6e-20 104.0 53 83.0
CSS0024966 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 6.2e-20 102.1 115 52.2
TPR.G6604 Trifolium pratense HOM05D005904 ORTHO05D007074 1.4e-19 100.9 72 70.8
Potri.003G038400 Populus trichocarpa HOM05D005904 ORTHO05D007074 2.0e-18 97.1 105 51.4
CSS0026651 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 5.8e-18 95.5 54 81.5
MCO11G030 Micromonas commoda HOM05D005904 ORTHO05D007074 5.8e-18 95.5 135 38.5
MCO01G154 Micromonas commoda HOM05D005904 ORTHO05D268674 8.4e-09 65.1 128 30.5
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 1.1e-08 64.7 36 80.6
SGA_v2.0_scaffold71G23779 Striga asiatica HOM05D005904 ORTHO05D007074 2.4e-08 63.5 135 37.0


User provided reference genes

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