Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G137600 Manihot esculenta HOM05D004845 ORTHO05D005957 0.0e+00 2027.7 1237 100.0
Manes.11G028800 Manihot esculenta HOM05D004845 ORTHO05D005957 0.0e+00 1363.6 1248 72.4
Potri.003G033100 Populus trichocarpa HOM05D004845 ORTHO05D005957 0.0e+00 1231.5 1195 67.3
Sabra03G0019000 Salix brachista HOM05D004845 ORTHO05D005957 0.0e+00 1201.0 1186 67.0
Thecc.06G108000 Theobroma cacao HOM05D004845 ORTHO05D005957 0.0e+00 1127.5 1199 62.7
Duzib160G0801 Durio zibethinus HOM05D004845 ORTHO05D005957 0.0e+00 1077.0 1191 58.9
Dinv30397 Davidia involucrata HOM05D004845 ORTHO05D005957 8.4e-310 1067.4 1206 61.4
Atru.chr1.3636 Acer truncatum HOM05D004845 ORTHO05D005957 1.2e-308 1063.5 1205 60.2
QL05p015844 Quercus lobata HOM05D004845 ORTHO05D005957 2.5e-306 1055.8 1226 58.6
Duzib235G0635 Durio zibethinus HOM05D004845 ORTHO05D005957 3.1e-296 1022.3 1197 60.5
Cfa003605 Carpinus fangiana HOM05D004845 ORTHO05D005957 9.9e-295 1017.3 1209 58.1
Ciclev10024729m.g Citrus clementina HOM05D004845 ORTHO05D005957 5.1e-291 1005.0 1221 58.0
Gohir.A05G133700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 1.2e-287 993.8 1194 56.4
Dinv37932 Davidia involucrata HOM05D004845 ORTHO05D005957 1.5e-287 993.4 1208 58.0
Gorai.009G139700 Gossypium raimondii HOM05D004845 ORTHO05D005957 3.0e-283 979.2 1194 56.0
Gohir.D05G135700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 3.7e-281 972.2 1196 55.6
RcHm_v2.0_Chr2g0142521 Rosa chinensis HOM05D004845 ORTHO05D005957 2.1e-276 956.4 1193 54.6
CiPaw.02G142000 Carya illinoinensis HOM05D004845 ORTHO05D005957 1.4e-272 943.7 1206 55.1
Prupe.3G052500 Prunus persica HOM05D004845 ORTHO05D005957 6.5e-270 934.9 1206 53.6
Cpa.g.sc131.35 Carica papaya HOM05D004845 ORTHO05D005957 6.1e-268 928.3 1152 57.6
Rhsim08G0231600 Rhododendron simsii HOM05D004845 ORTHO05D005957 3.9e-267 925.6 1236 52.9
FAN02G0586 Fragaria x ananassa HOM05D004845 ORTHO05D005957 1.4e-264 917.1 1203 52.9
FAN14G1946 Fragaria x ananassa HOM05D004845 ORTHO05D005957 4.1e-264 915.6 1202 52.9
vmacro18819 Vaccinium macrocarpon HOM05D004845 ORTHO05D005957 6.9e-264 914.8 1201 53.7
FvH4_6g32970 Fragaria vesca HOM05D004845 ORTHO05D005957 1.5e-263 913.7 1203 52.8
FAN09G4600 Fragaria x ananassa HOM05D004845 ORTHO05D005957 5.0e-262 908.7 1207 52.9
TWI31G1049 Tripterygium wilfordii HOM05D004845 ORTHO05D005957 5.5e-261 905.2 1221 55.7
Glyma.07G012400 Glycine max HOM05D004845 ORTHO05D005957 2.7e-260 902.9 1202 52.6
MD09G1196000 Malus domestica HOM05D004845 ORTHO05D005957 2.7e-260 902.9 1198 52.4
TAR629G3185 Trochodendron aralioides HOM05D004845 ORTHO05D005957 5.1e-259 898.7 1231 52.7
CANSAT56G3316 Cannabis sativa HOM05D004845 ORTHO05D005957 4.4e-258 895.6 1204 53.3
Glyma.08G196100 Glycine max HOM05D004845 ORTHO05D005957 2.4e-256 889.8 1202 52.2
arahy.Tifrunner.gnm1.ann1.JSQ5P9 Arachis hypogaea HOM05D004845 ORTHO05D005957 1.5e-250 870.5 1202 51.2
ClCG07G013620 Citrullus lanatus HOM05D004845 ORTHO05D005957 3.1e-248 862.8 1201 52.0
Sed0014548 Sechium edule HOM05D004845 ORTHO05D005957 2.9e-246 856.3 1205 51.3
MELO3C013040.2 Cucumis melo HOM05D004845 ORTHO05D005957 3.8e-246 855.9 1201 51.1
COL.COLO4_30609 Corchorus olitorius HOM05D004845 ORTHO05D005957 2.5e-245 853.2 1188 48.3
GSVIVG01016889001 Vitis vinifera HOM05D004845 ORTHO05D005957 4.0e-243 845.9 1194 48.4
arahy.Tifrunner.gnm1.ann1.7F0ZFP Arachis hypogaea HOM05D004845 ORTHO05D005957 4.4e-242 842.4 1202 50.1
CsaV3_3G044010 Cucumis sativus L. HOM05D004845 ORTHO05D005957 1.0e-238 831.2 1201 50.8
Lj3g0006882 Lotus japonicus HOM05D004845 ORTHO05D005957 1.7e-238 830.5 1199 49.8
Medtr8g015620 Medicago truncatula HOM05D004845 ORTHO05D005957 2.9e-238 829.7 1196 48.8
FAN05G2503 Fragaria x ananassa HOM05D004845 ORTHO05D005957 6.5e-238 828.6 1352 46.1
Ca_23299_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 7.5e-234 815.1 1199 48.5
Nn1g08771 Nelumbo nucifera HOM05D004845 ORTHO05D005957 5.4e-232 808.9 1236 50.5
Phvul.010G141800 Phaseolus vulgaris HOM05D004845 ORTHO05D005957 4.5e-231 805.8 1196 48.7
Sed0023831 Sechium edule HOM05D004845 ORTHO05D005957 1.1e-229 801.2 1201 50.2
VMungo0331G0639 Vigna mungo HOM05D004845 ORTHO05D005957 2.2e-225 786.9 1197 48.6
MD17G1176700 Malus domestica HOM05D004845 ORTHO05D005957 1.2e-223 781.2 1205 48.4
THA.LOC104817934 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 1.2e-223 781.2 1220 46.9
Lj3g0020048 Lotus japonicus HOM05D004845 ORTHO05D005957 1.2e-218 764.6 1157 47.8
Lalb_Chr04g0263091 Lupinus albus HOM05D004845 ORTHO05D005957 1.7e-217 760.8 1200 47.4
DCAR_026375 Daucus carota HOM05D004845 ORTHO05D005957 4.9e-217 759.2 1201 47.8
Cc04_g02180 Coffea canephora HOM05D004845 ORTHO05D005957 2.5e-213 746.9 1202 48.6
Actinidia32134 Actinidia chinensis HOM05D004845 ORTHO05D005957 7.0e-208 728.8 1085 49.4
THA.LOC104810560 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 7.3e-205 718.8 1218 44.8
Sc12g0009860 Simmondsia chinensis HOM05D004845 ORTHO05D005957 1.8e-195 687.6 1213 46.2
Peaxi162Scf00038g01322 Petunia axillaris HOM05D004845 ORTHO05D005957 4.0e-195 686.4 1221 45.5
Thhalv10019924m.g Eutrema salsugineum HOM05D004845 ORTHO05D005957 5.8e-194 682.6 1206 44.4
PGR102G0505 Punica granatum HOM05D004845 ORTHO05D005957 3.8e-193 679.9 1201 46.5
MSTRG.22604 Avicennia marina HOM05D004845 ORTHO05D005957 4.9e-193 679.5 1207 45.1
Hund07666 Selenicereus undatus HOM05D004845 ORTHO05D005957 4.7e-188 662.9 1194 45.4
Carub.0003s2130 Capsella rubella HOM05D004845 ORTHO05D005957 8.1e-188 662.1 1199 44.5
AL3G35330 Arabidopsis lyrata HOM05D004845 ORTHO05D005957 2.4e-187 660.6 1198 45.2
Sopen03g040190 Solanum pennellii HOM05D004845 ORTHO05D005957 4.9e-185 652.9 1213 45.2
Solyc03g121380.3 Solanum lycopersicum HOM05D004845 ORTHO05D005957 1.1e-184 651.7 1212 45.0
Migut.I01002 Erythranthe guttata HOM05D004845 ORTHO05D005957 1.9e-184 651.0 1200 45.0
Oeu052809.1 Olea europaea HOM05D004845 ORTHO05D005957 1.3e-182 644.8 1122 45.9
Sp3g19330 Schrenkiella parvula HOM05D004845 ORTHO05D005957 2.8e-180 637.1 1185 43.3
CAN.G1668.10 Capsicum annuum HOM05D004845 ORTHO05D005957 1.5e-178 631.3 1198 44.8
EL10Ac9g21102 Beta vulgaris HOM05D004845 ORTHO05D005957 9.3e-176 622.1 1196 44.7
AT3G21290 Arabidopsis thaliana HOM05D004845 ORTHO05D005957 2.1e-172 610.9 1218 42.7
PSO170G6909 Papaver somniferum HOM05D004845 ORTHO05D005957 4.5e-170 603.2 1217 44.0
CSS0001379 Camellia sinensis var. sinensis HOM05D004845 ORTHO05D005957 2.3e-166 590.9 846 54.1
Psat4g193760 Pisum sativum HOM05D004845 ORTHO05D005957 8.2e-164 582.4 1064 43.4
Aqoxy7G00060 Aquilegia oxysepala HOM05D004845 ORTHO05D005957 6.5e-161 572.8 1229 42.0
Aa31LG8G7990 Aethionema arabicum HOM05D004845 ORTHO05D005957 8.4e-161 572.4 1158 43.4
BcaC05g28184 Brassica carinata HOM05D004845 ORTHO05D005957 1.9e-160 571.2 1181 40.1
C05p42240 Brassica napus HOM05D004845 ORTHO05D005957 1.9e-160 571.2 1181 40.1
BolC5t32952H Brassica oleracea HOM05D004845 ORTHO05D005957 1.9e-160 571.2 1181 40.1
BraA05t21625Z Brassica rapa HOM05D004845 ORTHO05D005957 1.9e-160 571.2 1183 41.4
A05p27330 Brassica napus HOM05D004845 ORTHO05D005957 3.2e-160 570.5 1182 41.4
BcaB06g26218 Brassica carinata HOM05D004845 ORTHO05D005957 2.1e-159 567.8 1184 42.7
ECA232G1750 Erigeron canadensis HOM05D004845 ORTHO05D005957 2.7e-159 567.4 1196 41.8
HanXRQChr09g0276331 Helianthus annuus HOM05D004845 ORTHO05D005957 1.1e-157 562.0 1187 41.9
Eucgr.J02886 Eucalyptus grandis HOM05D004845 ORTHO05D005957 6.3e-156 556.2 1040 46.8
DCAR_007608 Daucus carota HOM05D004845 ORTHO05D005957 8.2e-156 555.8 1201 40.8
Lsat_1_v5_gn_4_95940 Lactuca sativa HOM05D004845 ORTHO05D005957 5.3e-155 553.1 1179 42.2
AUR62038325 Chenopodium quinoa HOM05D004845 ORTHO05D005957 1.8e-150 538.1 1225 37.2
AUR62023919 Chenopodium quinoa HOM05D004845 ORTHO05D005957 2.3e-150 537.7 1238 37.1
TPR.G8763 Trifolium pratense HOM05D004845 ORTHO05D005957 2.4e-147 527.7 1178 40.0
Oeu026736.3 Olea europaea HOM05D004845 ORTHO05D005957 3.4e-146 523.9 1168 37.8
ATR0730G184 Amborella trichopoda HOM05D004845 ORTHO05D005957 5.0e-145 520.0 1225 40.2
Lj5C49T6 Lonicera japonica HOM05D004845 ORTHO05D005957 1.1e-139 502.3 1050 40.0
Ah.01g016900 Amaranthus hybridus HOM05D004845 ORTHO05D005957 8.0e-135 486.1 1162 40.6
Actinidia21742 Actinidia chinensis HOM05D004845 ORTHO05D005957 2.2e-129 468.0 921 38.7
Haze_15920 Corylus avellana HOM05D004845 ORTHO05D005957 2.9e-129 467.6 580 50.5
HanXRQChr05g0140141 Helianthus annuus HOM05D004845 ORTHO05D005957 3.4e-125 454.1 1181 38.2
CARHR097190 Cardamine hirsuta HOM05D004845 ORTHO05D005957 2.2e-124 451.4 1056 40.6
SGA_v2.0_scaffold71G23747 Striga asiatica HOM05D004845 ORTHO05D005957 1.0e-118 432.6 1197 33.3
CDE10G0270 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 2.7e-114 417.9 1195 38.0
BcaC09g49066 Brassica carinata HOM05D004845 ORTHO05D005957 2.3e-113 414.8 1185 35.2
Nitab4.5_0004848g0010 Nicotiana tabacum HOM05D004845 ORTHO05D005957 1.8e-110 405.2 1182 36.5
Zm00001eb006560 Zea mays HOM05D004845 ORTHO05D005957 4.5e-106 390.6 1239 35.5
Medtr8g015610 Medicago truncatula HOM05D004845 ORTHO05D005957 1.7e-100 372.1 1070 31.1
Zm00001eb401540 Zea mays HOM05D004845 ORTHO05D005957 4.9e-100 370.5 1226 35.3
MBI01_g37799_MAGBIO Magnolia biondii HOM05D004845 ORTHO05D005957 2.7e-98 364.8 747 38.4
SGA_v2.0_scaffold45G16992 Striga asiatica HOM05D004845 ORTHO05D005957 9.8e-93 346.3 344 58.4
SEGI_05846 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 1.1e-88 332.8 1298 32.7
CDE10G0876 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 1.1e-86 326.2 357 56.9
Lalb_Chr15g0087461 Lupinus albus HOM05D004845 ORTHO05D005957 1.6e-82 312.4 1128 31.6
Atru.chr1.3631 Acer truncatum HOM05D001194 ORTHO05D005909 1.3e-81 309.3 335 54.9
SEGI_07021 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 1.3e-76 292.7 1268 31.9
unitig_749.g14048 Utricularia gibba HOM05D004845 ORTHO05D005957 4.9e-76 290.8 1076 35.1
Actinidia21743 Actinidia chinensis HOM05D004845 ORTHO05D005957 2.5e-72 278.5 254 63.8
Duzib192G0218 Durio zibethinus HOM05D004845 ORTHO05D005957 2.9e-68 265.0 276 59.4
HPP92_028291 Vanilla planifolia HOM05D004845 ORTHO05D005957 6.2e-55 220.7 150 74.0
Lalb_Chr14g0372881 Lupinus albus HOM05D004845 ORTHO05D005957 2.1e-50 205.7 1051 31.1
Lalb_Chr14g0372871 Lupinus albus HOM05D004845 ORTHO05D005957 1.1e-48 199.9 129 75.2
Mapoly0021s0057 Marchantia polymorpha HOM05D004845 ORTHO05D005957 6.5e-44 184.1 353 38.2
C01p42960 Brassica napus HOM05D004845 ORTHO05D005957 7.9e-42 177.2 888 31.0
AagrBONN_evm.TU.Sc2ySwM_344.5033 Anthoceros agrestis HOM05D004845 ORTHO05D005957 6.3e-39 167.5 352 36.9
CDE10G0326 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 6.3e-39 167.5 648 28.9
BolC1t04240H Brassica oleracea HOM05D004845 ORTHO05D005957 1.8e-38 166.0 124 67.7
Pp3c12_1570 Physcomitrium patens HOM05D004845 ORTHO05D005957 1.3e-36 159.8 333 36.9
Haze_15921 Corylus avellana HOM05D004845 ORTHO05D005957 6.5e-36 157.5 214 52.3
SMO334G0114 Selaginella moellendorffii HOM05D004845 ORTHO05D005957 8.8e-33 147.1 360 32.8
Os03g0187100 Oryza sativa ssp. japonica HOM05D004845 ORTHO05D005957 2.0e-32 146.0 776 28.5
Ca_23296_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 8.2e-31 140.6 271 35.8
C01p42950 Brassica napus HOM05D004845 ORTHO05D005957 7.7e-29 134.0 147 46.3
Ca_23298_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 2.9e-28 132.1 178 46.1
HPP92_028293 Vanilla planifolia HOM05D004845 ORTHO05D005957 1.1e-27 130.2 175 44.6
unitig_749.g14049 Utricularia gibba HOM05D004845 ORTHO05D005957 1.4e-27 129.8 105 55.2
SHI11164 Sapria himalayana HOM05D004845 ORTHO05D003034 1.5e-24 119.8 61 86.9
SHI11172 Sapria himalayana HOM05D004845 ORTHO05D005957 1.5e-21 109.8 707 31.5
CBR_g20996 Chara braunii HOM05D004845 ORTHO05D005957 5.9e-21 107.8 137 44.5
Cpa.g.sc131.32 Carica papaya HOM05D004845 ORTHO05D005957 2.6e-16 92.4 58 77.6
SHI11167 Sapria himalayana HOM05D004845 ORTHO05D005957 7.5e-16 90.9 197 37.1
HPP92_028292 Vanilla planifolia HOM05D004845 ORTHO05D005957 7.5e-16 90.9 671 33.2
Actinidia32135 Actinidia chinensis HOM05D004845 ORTHO05D005957 3.1e-14 85.5 61 73.8
Zm00001eb424050 Zea mays HOM05D002942 ORTHO05D003270 9.1e-14 84.0 72 55.6
SHI11163 Sapria himalayana HOM05D004845 ORTHO05D005957 1.2e-13 83.6 55 72.7
Medtr1g021875 Medicago truncatula HOM05D004845 ORTHO05D005957 5.9e-13 81.3 67 65.7
BolC1t04239H Brassica oleracea HOM05D004845 ORTHO05D005957 1.0e-09 70.5 149 38.3
CBR_g20995 Chara braunii HOM05D004845 ORTHO05D005957 1.8e-09 69.7 301 28.2
PGSC0003DMG400002508 Solanum tuberosum HOM05D004845 ORTHO05D005957 3.0e-09 68.9 55 63.6
BolC1t04238H Brassica oleracea HOM05D004845 ORTHO05D005957 1.2e-08 67.0 55 54.5
SHI11166 Sapria himalayana HOM05D004845 ORTHO05D005957 7.5e-08 64.3 43 72.1


User provided reference genes

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