Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 9.6e-128 460.3 254 100.0
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 2.1e-106 389.4 253 86.2
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 7.9e-106 387.5 252 82.1
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 1.5e-104 383.3 253 84.2
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 1.3e-103 380.2 255 82.4
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 4.8e-103 378.3 252 84.5
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 1.5e-101 373.2 253 80.2
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 2.0e-101 372.9 252 82.9
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 2.6e-101 372.5 254 82.3
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 5.9e-101 371.3 254 82.3
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 7.7e-101 370.9 252 80.2
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 7.7e-101 370.9 254 82.3
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 2.2e-100 369.4 259 79.9
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 3.8e-100 368.6 250 83.2
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 8.5e-100 367.5 250 82.8
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 1.9e-99 366.3 253 79.4
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 4.2e-99 365.2 255 80.0
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 2.7e-98 362.5 256 77.3
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 1.0e-97 360.5 256 78.5
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 3.0e-97 359.0 256 77.3
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 3.9e-97 358.6 251 81.7
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 5.1e-97 358.2 253 78.3
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 5.1e-97 358.2 257 79.4
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 6.7e-97 357.8 256 78.1
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 6.7e-97 357.8 253 79.1
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 2.0e-96 356.3 257 79.0
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 2.5e-96 355.9 255 77.6
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 1.7e-95 353.2 253 78.3
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 8.2e-95 350.9 247 81.0
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 1.4e-94 350.1 255 75.7
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 2.4e-94 349.4 246 79.3
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 5.3e-94 348.2 255 77.3
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 6.9e-94 347.8 256 77.7
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 6.9e-94 347.8 253 78.3
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 9.1e-94 347.4 266 72.9
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 1.2e-93 347.1 257 76.7
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 1.2e-93 347.1 257 76.3
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 1.2e-93 347.1 253 75.5
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 1.5e-93 346.7 250 78.0
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 1.5e-93 346.7 251 76.9
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 2.0e-93 346.3 248 77.8
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 4.5e-93 345.1 243 76.1
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 5.9e-93 344.7 255 77.6
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 7.7e-93 344.4 251 75.7
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 7.7e-93 344.4 257 78.2
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 1.0e-92 344.0 245 79.2
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 1.0e-92 344.0 251 75.7
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 1.3e-92 343.6 255 76.1
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 2.9e-92 342.4 256 76.6
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 5.0e-92 341.7 254 76.0
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 6.5e-92 341.3 254 74.0
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 8.5e-92 340.9 251 75.3
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 8.5e-92 340.9 256 77.3
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 1.4e-91 340.1 254 75.2
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 2.5e-91 339.3 256 76.2
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 9.4e-91 337.4 254 75.2
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 2.7e-90 335.9 251 73.3
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 4.7e-90 335.1 238 81.1
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 4.7e-90 335.1 250 76.8
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 7.9e-90 334.3 251 73.7
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 7.9e-90 334.3 255 76.1
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 1.0e-89 334.0 247 76.5
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 1.8e-89 333.2 249 77.1
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 2.3e-89 332.8 250 76.4
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 1.1e-88 330.5 254 76.0
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 3.3e-88 328.9 250 74.8
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 3.3e-88 328.9 246 76.8
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 7.4e-88 327.8 242 75.6
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 9.7e-88 327.4 246 73.6
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 2.2e-87 326.2 246 76.0
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 2.2e-87 326.2 256 74.2
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 8.2e-87 324.3 246 74.0
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 1.1e-86 323.9 256 73.8
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 2.4e-86 322.8 243 75.7
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 2.4e-86 322.8 242 75.2
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 4.1e-86 322.0 215 74.9
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 7.0e-86 321.2 246 72.4
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 9.1e-86 320.9 252 74.6
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 1.2e-85 320.5 248 73.8
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 4.5e-85 318.5 347 57.1
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 1.3e-84 317.0 247 71.3
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 1.7e-84 316.6 256 73.4
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 3.8e-84 315.5 244 69.7
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 3.8e-84 315.5 237 74.3
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 3.8e-84 315.5 203 77.8
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 6.5e-84 314.7 258 72.9
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 6.5e-84 314.7 236 74.2
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 6.5e-84 314.7 237 73.8
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 9.4e-83 310.8 260 69.6
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 9.4e-83 310.8 273 66.7
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 1.2e-82 310.5 248 70.6
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 1.6e-82 310.1 248 71.8
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 2.1e-82 309.7 246 72.0
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 3.6e-82 308.9 247 71.3
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 4.7e-82 308.5 247 71.7
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 6.1e-82 308.1 250 69.2
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 4.0e-81 305.4 243 71.2
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 1.7e-79 300.1 254 69.7
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 2.2e-79 299.7 252 68.3
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 2.8e-79 299.3 245 70.2
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 2.8e-79 299.3 231 71.4
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 3.7e-79 298.9 194 76.8
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 6.3e-79 298.1 243 70.4
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 1.4e-78 297.0 254 68.9
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 7.7e-77 291.2 277 63.5
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 1.3e-76 290.4 297 61.6
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 2.5e-75 286.2 252 64.3
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 7.2e-75 284.6 334 55.4
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 3.4e-72 275.8 288 58.3
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 1.8e-70 270.0 254 61.8
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 5.4e-70 268.5 249 64.7
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 2.0e-69 266.5 246 65.4
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 4.5e-69 265.4 248 59.3
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 8.5e-68 261.2 251 60.6
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 1.2e-66 257.3 251 60.6
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 1.6e-66 256.9 182 75.3
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.0e-60 237.7 247 57.9
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 1.9e-59 233.4 243 59.3
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 4.7e-58 228.8 248 59.3
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 1.8e-57 226.9 148 79.1
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 3.4e-56 222.6 223 54.7
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 2.2e-55 219.9 220 56.4
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 9.2e-54 214.5 247 57.1
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 5.9e-53 211.8 136 79.4
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 2.3e-49 199.9 132 75.8
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 3.1e-49 199.5 165 69.7
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 1.0e-44 184.5 149 75.8
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 2.3e-44 183.3 145 64.8
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.5e-43 179.9 136 69.9
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 5.2e-41 172.2 256 44.5
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 1.1e-38 164.5 193 50.8
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 1.7e-36 157.1 193 58.5
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 6.6e-36 155.2 341 41.1
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 1.6e-34 150.6 223 39.0
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 6.4e-31 138.7 233 38.6
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 7.1e-30 135.2 114 77.2
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.7e-28 130.6 111 72.1
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 2.3e-28 130.2 222 35.6
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 4.0e-25 119.4 72 81.9
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 2.6e-24 116.7 92 64.1
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 2.9e-23 113.2 60 86.7
PSO135G0227 Papaver somniferum HOM05D005017 ORTHO05D006044 1.1e-19 101.3 110 50.0
PSO675G1433 Papaver somniferum HOM05D005017 ORTHO05D006044 1.6e-18 97.4 79 62.0
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 1.7e-15 87.4 82 70.7
Pp3c6_13820 Physcomitrium patens HOM05D005017 ORTHO05D006044 1.6e-13 80.9 184 34.8
Cfa022882 Carpinus fangiana HOM05D005017 ORTHO05D006044 4.3e-11 72.8 160 35.0
Migut.I01159 Erythranthe guttata HOM05D005017 ORTHO05D006044 3.4e-08 63.2 59 52.5
Hund07663 Selenicereus undatus HOM05D001165 ORTHO05D010360 2.9e-07 60.1 38 73.7
TAR383G0476 Trochodendron aralioides HOM05D005017 ORTHO05D006044 1.4e-06 57.8 34 70.6
TAR497G0002 Trochodendron aralioides HOM05D005017 ORTHO05D006044 5.5e-06 55.8 30 86.7


User provided reference genes

Program Settings