Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G132900 Manihot esculenta HOM05D009800 ORTHO05D011618 2.1e-94 349.0 175 100.0
Manes.11G034800 Manihot esculenta HOM05D009800 ORTHO05D011618 4.4e-39 165.2 189 52.4
TAR636G0821 Trochodendron aralioides HOM05D009800 ORTHO05D011618 4.9e-14 82.0 136 36.0
Dinv36697 Davidia involucrata HOM05D009800 ORTHO05D011618 3.2e-13 79.3 122 37.7
Nn8g39099 Nelumbo nucifera HOM05D009800 ORTHO05D001848 1.2e-12 77.4 203 29.1
Aqoxy7G01456 Aquilegia oxysepala HOM05D009800 ORTHO05D011618 2.7e-12 76.3 171 32.7
CiPaw.04G159000 Carya illinoinensis HOM05D009800 ORTHO05D011618 2.3e-11 73.2 111 38.7
Dinv37986 Davidia involucrata HOM05D028665 ORTHO05D011618 2.3e-11 73.2 180 30.6
COL.COLO4_34766 Corchorus olitorius HOM05D009800 ORTHO05D011618 8.6e-11 71.2 137 36.5
CSS0017187 Camellia sinensis var. sinensis HOM05D003439 ORTHO05D004062 4.3e-10 68.9 213 28.6
GSVIVG01017005001 Vitis vinifera HOM05D009800 ORTHO05D011618 4.3e-10 68.9 168 32.1
Cfa003196 Carpinus fangiana HOM05D064020 ORTHO05D011618 1.2e-09 67.4 98 42.9
Prupe.7G221600 Prunus persica HOM05D009800 ORTHO05D011618 1.6e-09 67.0 100 42.0
DCAR_012048 Daucus carota HOM05D009800 ORTHO05D011618 2.1e-09 66.6 172 30.2
Ca_11007_v3 Cicer arietinum L. HOM05D002243 ORTHO05D001848 1.4e-08 63.9 80 38.8
Duzib168G0690 Durio zibethinus HOM05D009800 ORTHO05D011618 2.4e-08 63.2 155 29.0
Psat6g212880 Pisum sativum HOM05D002243 ORTHO05D001848 4.0e-08 62.4 78 41.0
Lalb_Chr06g0164961 Lupinus albus HOM05D002243 ORTHO05D001848 6.8e-08 61.6 96 36.5
Nitab4.5_0001477g0030 Nicotiana tabacum HOM05D002243 ORTHO05D001848 6.8e-08 61.6 99 34.3
Aqoxy7G03883 Aquilegia oxysepala HOM05D012031 ORTHO05D001848 8.9e-08 61.2 91 39.6
Glyma.11G002700 Glycine max HOM05D002243 ORTHO05D001848 1.2e-07 60.8 73 42.5
Manes.18G052200 Manihot esculenta HOM05D002243 ORTHO05D001848 1.2e-07 60.8 180 30.0
ATR0767G056 Amborella trichopoda HOM05D002243 ORTHO05D001848 1.5e-07 60.5 68 42.6
CiPaw.05G022100 Carya illinoinensis HOM05D002243 ORTHO05D001848 1.5e-07 60.5 50 52.0
CiPaw.07G201100 Carya illinoinensis HOM05D002243 ORTHO05D001848 1.5e-07 60.5 106 34.9
Ciclev10002567m.g Citrus clementina HOM05D002243 ORTHO05D001848 1.5e-07 60.5 118 33.1
Medtr1g105890 Medicago truncatula HOM05D002243 ORTHO05D001848 1.5e-07 60.5 95 37.9
MBI04_g06589_MAGBIO Magnolia biondii HOM05D002243 ORTHO05D001848 2.0e-07 60.1 102 35.3
Medtr5g005430 Medicago truncatula HOM05D002243 ORTHO05D001848 2.0e-07 60.1 76 40.8
Nitab4.5_0000396g0020 Nicotiana tabacum HOM05D002243 ORTHO05D001848 2.0e-07 60.1 153 30.1
PSO210G1075 Papaver somniferum HOM05D049672 ORTHO05D011618 2.0e-07 60.1 137 32.8
CiPaw.06G162700 Carya illinoinensis HOM05D002243 ORTHO05D001848 2.6e-07 59.7 65 44.6
Duzib132G0349 Durio zibethinus HOM05D002243 ORTHO05D001848 3.4e-07 59.3 69 42.0
Lalb_Chr05g0220451 Lupinus albus HOM05D002243 ORTHO05D001848 3.4e-07 59.3 97 36.1
Lj4g0000908 Lotus japonicus HOM05D012031 ORTHO05D014454 4.4e-07 58.9 159 25.8
HanXRQChr06g0181751 Helianthus annuus HOM05D002243 ORTHO05D001848 5.8e-07 58.5 66 42.4
Potri.001G288800 Populus trichocarpa HOM05D002243 ORTHO05D001848 5.8e-07 58.5 63 46.0
MSTRG.27769 Avicennia marina HOM05D002243 ORTHO05D001848 7.6e-07 58.2 86 38.4
TWI14G1334 Tripterygium wilfordii HOM05D002243 ORTHO05D001848 7.6e-07 58.2 70 41.4
DCAR_001867 Daucus carota HOM05D002243 ORTHO05D001848 9.9e-07 57.8 90 38.9
Hma1.2p1_1953F.1_g308845 Hydrangea macrophylla HOM05D002243 ORTHO05D001848 9.9e-07 57.8 83 42.2
Hma1.2p1_1953F.1_g308850 Hydrangea macrophylla HOM05D002243 ORTHO05D001848 9.9e-07 57.8 83 42.2
TWI59G0771 Tripterygium wilfordii HOM05D002243 ORTHO05D001848 9.9e-07 57.8 68 42.6
Glyma.01G241100 Glycine max HOM05D002243 ORTHO05D001848 1.3e-06 57.4 98 32.7
Glyma.17G086000 Glycine max HOM05D002243 ORTHO05D001848 1.3e-06 57.4 76 36.8
Manes.07G051400 Manihot esculenta HOM05D002243 ORTHO05D001848 1.3e-06 57.4 100 34.0
Nn6g34568 Nelumbo nucifera HOM05D002243 ORTHO05D001848 1.3e-06 57.4 66 45.5
Peaxi162Scf00016g03211 Petunia axillaris HOM05D002243 ORTHO05D001848 1.3e-06 57.4 96 33.3
Prupe.8G152300 Prunus persica HOM05D002243 ORTHO05D001848 1.3e-06 57.4 92 38.0
RcHm_v2.0_Chr2g0091571 Rosa chinensis HOM05D009800 ORTHO05D011618 1.3e-06 57.4 111 32.4
THA.LOC104819521 Tarenaya hassleriana HOM05D010391 ORTHO05D001848 1.3e-06 57.4 101 36.6
Thecc.09G102100 Theobroma cacao HOM05D009800 ORTHO05D011618 1.3e-06 57.4 113 31.9
CSS0016364 Camellia sinensis var. sinensis HOM05D002243 ORTHO05D001848 1.7e-06 57.0 48 50.0
Lj1g0019537 Lotus japonicus HOM05D002243 ORTHO05D001848 1.7e-06 57.0 44 50.0
Lj5g0020290 Lotus japonicus HOM05D002243 ORTHO05D001848 1.7e-06 57.0 99 38.4
Lalb_Chr09g0329371 Lupinus albus HOM05D002243 ORTHO05D001848 1.7e-06 57.0 134 32.1
BraA04t17359Z Brassica rapa HOM05D002243 ORTHO05D001848 2.2e-06 56.6 125 33.6
Haze_21939 Corylus avellana HOM05D002243 ORTHO05D001848 2.2e-06 56.6 110 35.5
Gohir.D02G234800 Gossypium hirsutum HOM05D002243 ORTHO05D001848 2.2e-06 56.6 68 39.7
Potri.007G008600 Populus trichocarpa HOM05D002243 ORTHO05D001848 2.2e-06 56.6 61 45.9
PGR042G1190 Punica granatum HOM05D002243 ORTHO05D001848 2.2e-06 56.6 68 42.6
Actinidia02430 Actinidia chinensis HOM05D002243 ORTHO05D001848 2.9e-06 56.2 81 33.3
Aqoxy6G01532 Aquilegia oxysepala HOM05D002243 ORTHO05D001848 2.9e-06 56.2 64 45.3
CSS0022177 Camellia sinensis var. sinensis HOM05D002243 ORTHO05D001848 2.9e-06 56.2 48 50.0
CSS0029796 Camellia sinensis var. sinensis HOM05D002243 ORTHO05D001848 2.9e-06 56.2 48 50.0
CAN.G504.9 Capsicum annuum HOM05D002243 ORTHO05D001848 2.9e-06 56.2 91 35.2
Ciclev10025075m.g Citrus clementina HOM05D002243 ORTHO05D001848 2.9e-06 56.2 111 33.3
Dinv09523 Davidia involucrata HOM05D002243 ORTHO05D001848 2.9e-06 56.2 48 50.0
Gorai.005G262800 Gossypium raimondii HOM05D002243 ORTHO05D001848 2.9e-06 56.2 70 38.6
Lalb_Chr02g0144841 Lupinus albus HOM05D002243 ORTHO05D001848 2.9e-06 56.2 97 38.1
MBI16_g31808_MAGBIO Magnolia biondii HOM05D002243 ORTHO05D001848 2.9e-06 56.2 53 43.4
Nn6g35306 Nelumbo nucifera HOM05D009800 ORTHO05D011618 2.9e-06 56.2 63 39.7
SGA_v2.0_scaffold269G46251 Striga asiatica HOM05D002243 ORTHO05D001848 2.9e-06 56.2 100 37.0
vmacro01929 Vaccinium macrocarpon HOM05D002243 ORTHO05D001848 2.9e-06 56.2 83 36.1
Ah.01g024500 Amaranthus hybridus HOM05D002243 ORTHO05D001848 3.8e-06 55.8 67 40.3
arahy.Tifrunner.gnm1.ann1.2Q65GK Arachis hypogaea HOM05D002243 ORTHO05D001848 3.8e-06 55.8 95 37.9
arahy.Tifrunner.gnm1.ann1.XGM7WG Arachis hypogaea HOM05D002243 ORTHO05D001848 3.8e-06 55.8 95 37.9
Cfa006795 Carpinus fangiana HOM05D002243 ORTHO05D001848 3.8e-06 55.8 84 35.7
CiPaw.08G028200 Carya illinoinensis HOM05D002243 ORTHO05D001848 3.8e-06 55.8 106 35.8
Haze_03961 Corylus avellana HOM05D002243 ORTHO05D001848 3.8e-06 55.8 82 36.6
Sc14g0002480 Simmondsia chinensis HOM05D002243 ORTHO05D001848 3.8e-06 55.8 84 38.1
unitig_61.g26040 Utricularia gibba HOM05D002243 ORTHO05D001848 3.8e-06 55.8 100 33.0
Ciclev10028128m.g Citrus clementina HOM05D002243 ORTHO05D001848 4.9e-06 55.5 67 40.3
COL.COLO4_17804 Corchorus olitorius HOM05D002243 ORTHO05D001848 4.9e-06 55.5 86 37.2
Gohir.D03G032300 Gossypium hirsutum HOM05D002243 ORTHO05D001848 4.9e-06 55.5 108 37.0
MD10G1112600 Malus domestica HOM05D002243 ORTHO05D001848 4.9e-06 55.5 80 38.8
Nitab4.5_0007488g0020 Nicotiana tabacum HOM05D002243 ORTHO05D001848 4.9e-06 55.5 86 34.9
Sopen01g049010 Solanum pennellii HOM05D002243 ORTHO05D001848 4.9e-06 55.5 99 36.4
Lj9P338T47 Lonicera japonica HOM05D002243 ORTHO05D001848 6.4e-06 55.1 65 44.6
Peaxi162Scf00152g00066 Petunia axillaris HOM05D002243 ORTHO05D001848 6.4e-06 55.1 80 37.5
Sabra16G0180600 Salix brachista HOM05D002243 ORTHO05D001848 6.4e-06 55.1 63 46.0
Sed0027893 Sechium edule HOM05D002243 ORTHO05D001848 6.4e-06 55.1 68 35.3
Solyc01g106680.4 Solanum lycopersicum HOM05D002243 ORTHO05D001848 6.4e-06 55.1 99 36.4
vmacro22263 Vaccinium macrocarpon HOM05D002243 ORTHO05D001848 6.4e-06 55.1 74 37.8
VMungo1215G3316 Vigna mungo HOM05D002243 ORTHO05D001848 6.4e-06 55.1 106 36.8
GSVIVG01037020001 Vitis vinifera HOM05D002243 ORTHO05D001848 6.4e-06 55.1 78 38.5
MSTRG.20241 Avicennia marina HOM05D002243 ORTHO05D001848 8.4e-06 54.7 111 31.5
COL.COLO4_35368 Corchorus olitorius HOM05D002243 ORTHO05D001848 8.4e-06 54.7 125 35.2
Glyma.20G136900 Glycine max HOM05D002243 ORTHO05D001848 8.4e-06 54.7 68 39.7
Gorai.008G087300 Gossypium raimondii HOM05D002243 ORTHO05D001848 8.4e-06 54.7 97 37.1
QL02p042139 Quercus lobata HOM05D009800 ORTHO05D011618 8.4e-06 54.7 126 32.5
Sabra07G0006700 Salix brachista HOM05D002243 ORTHO05D001848 8.4e-06 54.7 61 42.6
TAR381G0567 Trochodendron aralioides HOM05D002243 ORTHO05D001848 8.4e-06 54.7 65 40.0


User provided reference genes

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