Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G124600 Manihot esculenta HOM05D006417 ORTHO05D008113 1.4e-31 139.0 74 100.0
BcaC05g25455 Brassica carinata HOM05D006417 ORTHO05D008113 1.6e-22 109.0 74 83.8
BcaC05g25459 Brassica carinata HOM05D006417 ORTHO05D008113 1.6e-22 109.0 74 83.8
AL1G27360 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 2.7e-22 108.2 74 82.4
AT1G15270 Arabidopsis thaliana HOM05D006417 ORTHO05D008113 2.7e-22 108.2 74 82.4
Carub.0001s1503 Capsella rubella HOM05D006417 ORTHO05D008113 2.7e-22 108.2 74 82.4
BcaB03g13069 Brassica carinata HOM05D006417 ORTHO05D008113 3.5e-22 107.8 74 82.4
BcaC07g38776 Brassica carinata HOM05D006417 ORTHO05D008113 6.0e-22 107.1 74 81.1
BcaC07g41515 Brassica carinata HOM05D006417 ORTHO05D008113 6.0e-22 107.1 74 81.1
A08p31670 Brassica napus HOM05D006417 ORTHO05D008113 6.0e-22 107.1 74 81.1
A09p61510 Brassica napus HOM05D006417 ORTHO05D008113 6.0e-22 107.1 74 81.1
CARHR015790 Cardamine hirsuta HOM05D006417 ORTHO05D008113 6.0e-22 107.1 74 81.1
Sp1g13580 Schrenkiella parvula HOM05D006417 ORTHO05D008113 6.0e-22 107.1 74 81.1
MBI06_g06678_MAGBIO Magnolia biondii HOM05D006417 ORTHO05D008113 7.8e-22 106.7 74 79.7
Ciclev10026914m.g Citrus clementina HOM05D006417 ORTHO05D008113 1.0e-21 106.3 74 82.4
Gorai.006G098200 Gossypium raimondii HOM05D006417 ORTHO05D008113 1.3e-21 105.9 75 78.7
SalBow2G2995 Salvia bowleyana HOM05D006417 ORTHO05D008113 1.3e-21 105.9 74 82.4
Gohir.A09G082600 Gossypium hirsutum HOM05D006417 ORTHO05D008113 2.3e-21 105.1 74 79.7
Thecc.06G089800 Theobroma cacao HOM05D006417 ORTHO05D008113 2.3e-21 105.1 74 81.1
Aa31LG4G200 Aethionema arabicum HOM05D006417 ORTHO05D008113 3.9e-21 104.4 74 78.4
TAR626G0232 Trochodendron aralioides HOM05D006417 ORTHO05D008113 3.9e-21 104.4 74 78.4
Gohir.D09G082500 Gossypium hirsutum HOM05D006417 ORTHO05D008113 5.1e-21 104.0 74 78.4
Hma1.2p1_2039F.1_g312170 Hydrangea macrophylla HOM05D006417 ORTHO05D008113 5.1e-21 104.0 72 80.6
MD17G1194100 Malus domestica HOM05D006417 ORTHO05D008113 5.1e-21 104.0 74 79.7
Lj3g0004039 Lotus japonicus HOM05D006417 ORTHO05D008113 6.6e-21 103.6 74 78.4
Lalb_Chr01g0012721 Lupinus albus HOM05D006417 ORTHO05D008113 6.6e-21 103.6 74 78.4
CsaV3_3G010850 Cucumis sativus L. HOM05D006417 ORTHO05D008113 8.7e-21 103.2 74 78.4
Sed0026778 Sechium edule HOM05D006417 ORTHO05D008113 8.7e-21 103.2 74 78.4
ATR0724G030 Amborella trichopoda HOM05D006417 ORTHO05D008113 1.1e-20 102.8 74 78.4
Aqoxy7G01686 Aquilegia oxysepala HOM05D006417 ORTHO05D008113 1.5e-20 102.4 74 77.0
ClCG05G003220 Citrullus lanatus HOM05D006417 ORTHO05D008113 1.5e-20 102.4 74 77.0
ClCG02G009660 Citrullus lanatus HOM05D006417 ORTHO05D008113 1.9e-20 102.1 74 77.0
Lj5A59T64 Lonicera japonica HOM05D006417 ORTHO05D008113 1.9e-20 102.1 74 78.4
Prupe.3G069900 Prunus persica HOM05D006417 ORTHO05D008113 1.9e-20 102.1 74 77.0
BolC5t30076H Brassica oleracea HOM05D006417 ORTHO05D008113 2.5e-20 101.7 71 81.7
Migut.D01026 Erythranthe guttata HOM05D006417 ORTHO05D008113 2.5e-20 101.7 74 79.7
FAN14G4157 Fragaria x ananassa HOM05D006417 ORTHO05D008113 2.5e-20 101.7 74 77.0
Glyma.08G206000 Glycine max HOM05D006417 ORTHO05D008113 2.5e-20 101.7 74 77.0
CANSAT56G0242 Cannabis sativa HOM05D006417 ORTHO05D008113 3.3e-20 101.3 74 77.0
Medtr4g012800 Medicago truncatula HOM05D006417 ORTHO05D008113 3.3e-20 101.3 74 75.7
Psat7g250440 Pisum sativum HOM05D006417 ORTHO05D008113 3.3e-20 101.3 74 75.7
HPP92_003724 Vanilla planifolia HOM05D002497 ORTHO05D002697 4.3e-20 100.9 73 76.7
Atru.chr1.3302 Acer truncatum HOM05D006417 ORTHO05D008113 7.3e-20 100.1 74 75.7
Aqoxy7G03790 Aquilegia oxysepala HOM05D006417 ORTHO05D008113 7.3e-20 100.1 74 74.3
FAN02G0035 Fragaria x ananassa HOM05D006417 ORTHO05D008113 7.3e-20 100.1 74 75.7
RcHm_v2.0_Chr2g0138111 Rosa chinensis HOM05D006417 ORTHO05D008113 7.3e-20 100.1 74 75.7
A06p11260 Brassica napus HOM05D006417 ORTHO05D008113 9.6e-20 99.8 71 78.9
C08p45090 Brassica napus HOM05D006417 ORTHO05D008113 9.6e-20 99.8 71 78.9
BolC8t52055H Brassica oleracea HOM05D006417 ORTHO05D008113 9.6e-20 99.8 71 78.9
BraA06t24306Z Brassica rapa HOM05D006417 ORTHO05D008113 9.6e-20 99.8 71 78.9
BraA09t41524Z Brassica rapa HOM05D006417 ORTHO05D008113 9.6e-20 99.8 71 78.9
Glyma.07G005600 Glycine max HOM05D006417 ORTHO05D008113 9.6e-20 99.8 74 75.7
Phvul.010G150000 Phaseolus vulgaris HOM05D006417 ORTHO05D008113 9.6e-20 99.8 74 74.3
Sed0004760 Sechium edule HOM05D006417 ORTHO05D008113 9.6e-20 99.8 74 75.7
Haze_16401 Corylus avellana HOM05D006417 ORTHO05D008113 1.3e-19 99.4 74 81.1
FAN05G1876 Fragaria x ananassa HOM05D006417 ORTHO05D008113 1.6e-19 99.0 74 74.3
C08p17070 Brassica napus HOM05D006417 ORTHO05D008113 2.1e-19 98.6 69 78.3
BolC8t49333H Brassica oleracea HOM05D006417 ORTHO05D008113 2.1e-19 98.6 69 78.3
Potri.001G181800 Populus trichocarpa HOM05D006417 ORTHO05D008113 2.1e-19 98.6 74 75.7
RcHm_v2.0_Chr2g0106421 Rosa chinensis HOM05D006417 ORTHO05D008113 2.8e-19 98.2 74 75.7
unitig_27.g25076 Utricularia gibba HOM05D006417 ORTHO05D008113 2.8e-19 98.2 74 75.7
Hund06616 Selenicereus undatus HOM05D006417 ORTHO05D008113 3.6e-19 97.8 74 75.7
Nn2g11755 Nelumbo nucifera HOM05D006417 ORTHO05D008113 4.8e-19 97.4 75 77.3
FAN09G4522 Fragaria x ananassa HOM05D006417 ORTHO05D008113 8.1e-19 96.7 74 73.0
CiPaw.01G238100 Carya illinoinensis HOM05D006417 ORTHO05D008113 1.4e-18 95.9 74 77.0
CiPaw.02G150500 Carya illinoinensis HOM05D006417 ORTHO05D008113 1.4e-18 95.9 74 78.4
Dinv38039 Davidia involucrata HOM05D006417 ORTHO05D008113 1.4e-18 95.9 74 75.7
AT3G16040 Arabidopsis thaliana HOM05D006417 ORTHO05D008113 1.8e-18 95.5 74 74.3
DCAR_023056 Daucus carota HOM05D006417 ORTHO05D008113 1.8e-18 95.5 71 76.1
Glyma.20G047300 Glycine max HOM05D006417 ORTHO05D008113 1.8e-18 95.5 74 73.0
HanXRQChr12g0376701 Helianthus annuus HOM05D006417 ORTHO05D008113 1.8e-18 95.5 74 78.4
HanXRQChr04g0096081 Helianthus annuus HOM05D006417 ORTHO05D008113 3.1e-18 94.7 74 77.0
AL3G28690 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 4.0e-18 94.4 74 73.0
AL810U10020 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 4.0e-18 94.4 74 73.0
Thhalv10022282m.g Eutrema salsugineum HOM05D006417 ORTHO05D008113 4.0e-18 94.4 74 73.0
Lj3g0012949 Lotus japonicus HOM05D006417 ORTHO05D008113 4.0e-18 94.4 75 74.7
CSS0028003 Camellia sinensis var. sinensis HOM05D006417 ORTHO05D008113 5.3e-18 94.0 68 77.9
Thhalv10009202m.g Eutrema salsugineum HOM05D006417 ORTHO05D008113 5.3e-18 94.0 102 60.8
COL.COLO4_30395 Corchorus olitorius HOM05D006417 ORTHO05D008113 6.9e-18 93.6 74 74.3
Eucgr.J02983 Eucalyptus grandis HOM05D006417 ORTHO05D008113 6.9e-18 93.6 69 76.8
Lsat_1_v5_gn_5_130340 Lactuca sativa HOM05D006417 ORTHO05D008113 6.9e-18 93.6 74 75.7
Carub.0003s1577 Capsella rubella HOM05D006417 ORTHO05D008113 1.2e-17 92.8 74 71.6
Aa31LG8G3190 Aethionema arabicum HOM05D006417 ORTHO05D008113 1.5e-17 92.4 74 71.6
Cpa.g.sc41.8 Carica papaya HOM05D006417 ORTHO05D008113 1.5e-17 92.4 80 67.5
Oeu063955.1 Olea europaea HOM05D006417 ORTHO05D008113 1.5e-17 92.4 74 77.0
C05p50430 Brassica napus HOM05D006417 ORTHO05D008113 2.0e-17 92.0 74 71.6
CARHR091200 Cardamine hirsuta HOM05D006417 ORTHO05D008113 2.0e-17 92.0 74 73.0
FAN26G3442 Fragaria x ananassa HOM05D006417 ORTHO05D008113 2.0e-17 92.0 74 74.3
Sc12g0009320 Simmondsia chinensis HOM05D006417 ORTHO05D008113 2.0e-17 92.0 74 71.6
Cc04_g03270 Coffea canephora HOM05D006417 ORTHO05D008113 3.4e-17 91.3 73 75.3
Migut.I00879 Erythranthe guttata HOM05D006417 ORTHO05D008113 4.5e-17 90.9 70 72.9
SalBow2G0478 Salvia bowleyana HOM05D008308 ORTHO05D008113 4.5e-17 90.9 67 76.1
EL10Ac9g22008 Beta vulgaris HOM05D006417 ORTHO05D008113 9.9e-17 89.7 74 70.3
Zm00001eb225700 Zea mays HOM05D006417 ORTHO05D008113 1.3e-16 89.4 72 75.0
Sp3g14390 Schrenkiella parvula HOM05D006417 ORTHO05D008113 2.2e-16 88.6 74 68.9
AagrBONN_evm.TU.Sc2ySwM_117.2290 Anthoceros agrestis HOM05D006417 ORTHO05D008113 2.9e-16 88.2 74 67.6
arahy.Tifrunner.gnm1.ann1.6441EL Arachis hypogaea HOM05D006417 ORTHO05D008113 3.8e-16 87.8 99 57.6
BcaNung06587 Brassica carinata HOM05D006417 ORTHO05D008113 6.4e-16 87.0 69 71.0
SGA_v2.0_scaffold37G14829 Striga asiatica HOM05D006417 ORTHO05D008113 1.1e-15 86.3 70 70.0
GSVIVG01017091001 Vitis vinifera HOM05D006417 ORTHO05D008113 1.1e-15 86.3 74 68.9
Peaxi162Scf00034g00611 Petunia axillaris HOM05D006417 ORTHO05D008113 1.4e-15 85.9 74 70.3
Pp3c23_11500 Physcomitrium patens HOM05D006417 ORTHO05D008113 1.4e-15 85.9 73 65.8
Pp3c24_10010 Physcomitrium patens HOM05D006417 ORTHO05D008113 1.4e-15 85.9 73 65.8
PGSC0003DMG400007579 Solanum tuberosum HOM05D006417 ORTHO05D008113 2.4e-15 85.1 74 70.3
Solyc12g043160.3 Solanum lycopersicum HOM05D006417 ORTHO05D008113 3.2e-15 84.7 74 70.3
A05p33430 Brassica napus HOM05D006417 ORTHO05D008113 9.3e-15 83.2 72 66.7
Mapoly0091s0070 Marchantia polymorpha HOM05D006417 ORTHO05D008113 1.6e-14 82.4 71 64.8
BcaC05g28917 Brassica carinata HOM05D006417 ORTHO05D008113 2.1e-14 82.0 83 62.7
FAN19G1924 Fragaria x ananassa HOM05D006417 ORTHO05D008113 2.7e-14 81.6 63 73.0
FvH4_1g16510 Fragaria vesca HOM05D006417 ORTHO05D008113 3.5e-14 81.3 63 73.0
Glyma.14G136351 Glycine max HOM05D006417 ORTHO05D008113 7.9e-14 80.1 69 66.7
DCAR_007563 Daucus carota HOM05D006417 ORTHO05D008113 1.3e-13 79.3 74 64.9
DCAR_026325 Daucus carota HOM05D006417 ORTHO05D008113 1.3e-13 79.3 74 64.9
ECA247G1523 Erigeron canadensis HOM05D001142 ORTHO05D004628 3.9e-13 77.8 64 73.4
CAN.G144.3 Capsicum annuum HOM05D006417 ORTHO05D008113 1.9e-12 75.5 69 68.1
DCAR_002649 Daucus carota HOM05D006417 ORTHO05D008113 7.4e-12 73.6 69 63.8
ClCG09G002080 Citrullus lanatus HOM05D000001 ORTHO05D000003 1.1e-10 69.7 42 88.1
Lsat_1_v5_gn_1_35180 Lactuca sativa HOM05D006417 ORTHO05D008113 1.1e-10 69.7 63 66.7
BraA08t35089Z Brassica rapa HOM05D006417 ORTHO05D008113 1.4e-10 69.3 40 90.0
Lalb_Chr04g0262751 Lupinus albus HOM05D006417 ORTHO05D008113 2.4e-10 68.6 40 90.0
ClCG11G012700 Citrullus lanatus HOM05D006417 ORTHO05D008113 5.3e-10 67.4 74 59.5
Cre10.g438600 Chlamydomonas reinhardtii HOM05D006417 ORTHO05D008113 3.8e-08 61.2 72 54.2
Nitab4.5_0004241g0020 Nicotiana tabacum HOM05D006417 ORTHO05D008113 2.5e-07 58.5 69 56.5
Nitab4.5_0002859g0060 Nicotiana tabacum HOM05D006417 ORTHO05D008113 3.2e-07 58.2 74 54.1


User provided reference genes

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