Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G122400 Manihot esculenta HOM05D005672 ORTHO05D003038 2.7e-64 248.4 121 100.0
Manes.04G122200 Manihot esculenta HOM05D005672 ORTHO05D003038 3.0e-47 191.8 118 78.0
Manes.04G122300 Manihot esculenta HOM05D005672 ORTHO05D003038 1.5e-46 189.5 118 77.1
Manes.04G121900 Manihot esculenta HOM05D005672 ORTHO05D003038 7.7e-43 177.2 118 73.7
Manes.04G122000 Manihot esculenta HOM05D005672 ORTHO05D003038 7.7e-43 177.2 118 73.7
Manes.04G122100 Manihot esculenta HOM05D005672 ORTHO05D003038 6.5e-42 174.1 118 72.9
Thecc.06G059000 Theobroma cacao HOM05D005672 ORTHO05D003038 1.2e-30 136.7 114 57.0
Thecc.06G084400 Theobroma cacao HOM05D005672 ORTHO05D003038 1.4e-28 129.8 113 56.6
Duzib160G0695 Durio zibethinus HOM05D005672 ORTHO05D003038 1.8e-28 129.4 107 58.9
Actinidia02490 Actinidia chinensis HOM05D005672 ORTHO05D003038 3.5e-27 125.2 115 52.2
Actinidia14259 Actinidia chinensis HOM05D005672 ORTHO05D003038 5.9e-27 124.4 115 53.0
Prupe.3G072900 Prunus persica HOM05D005672 ORTHO05D003038 1.3e-26 123.2 117 53.8
FAN05G0478 Fragaria x ananassa HOM05D005672 ORTHO05D003038 2.3e-26 122.5 108 58.3
Thecc.06G084700 Theobroma cacao HOM05D005672 ORTHO05D003038 3.0e-26 122.1 113 49.6
Eucgr.J03010 Eucalyptus grandis HOM05D005672 ORTHO05D003038 6.6e-26 120.9 108 55.6
TAR624G0127 Trochodendron aralioides HOM05D005672 ORTHO05D003038 1.5e-25 119.8 116 51.7
Eucgr.L03103 Eucalyptus grandis HOM05D005672 ORTHO05D003038 3.3e-25 118.6 108 52.8
Actinidia01798 Actinidia chinensis HOM05D005672 ORTHO05D003038 9.5e-25 117.1 108 50.9
Duzib192G0507 Durio zibethinus HOM05D005672 ORTHO05D003038 1.6e-24 116.3 112 50.0
Actinidia32765 Actinidia chinensis HOM05D005672 ORTHO05D003038 3.6e-24 115.2 108 49.1
Thecc.06G084800 Theobroma cacao HOM05D005672 ORTHO05D003038 4.7e-24 114.8 114 47.4
Duzib192G0432 Durio zibethinus HOM05D005672 ORTHO05D003038 6.2e-24 114.4 112 48.2
Duzib192G0711 Durio zibethinus HOM05D005672 ORTHO05D003038 6.2e-24 114.4 112 48.2
MD09G1214500 Malus domestica HOM05D005672 ORTHO05D003038 1.0e-23 113.6 116 50.9
Dinv30519 Davidia involucrata HOM05D005672 ORTHO05D003038 3.1e-23 112.1 95 55.8
THA.LOC104823572 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 5.8e-22 107.8 116 46.6
Cc04_g03540 Coffea canephora HOM05D005672 ORTHO05D003038 7.5e-22 107.5 117 44.4
Duzib192G0281 Durio zibethinus HOM05D005672 ORTHO05D003038 7.5e-22 107.5 112 45.5
Duzib192G0747 Durio zibethinus HOM05D005672 ORTHO05D003038 9.8e-22 107.1 100 51.0
CsaV3_7G033060 Cucumis sativus L. HOM05D005672 ORTHO05D003038 2.2e-21 105.9 119 42.0
Dinv30521 Davidia involucrata HOM05D005672 ORTHO05D003038 2.2e-21 105.9 117 49.6
Prupe.3G072800 Prunus persica HOM05D005672 ORTHO05D003038 2.9e-21 105.5 112 47.3
vmacro18924 Vaccinium macrocarpon HOM05D005672 ORTHO05D003038 3.7e-21 105.1 123 44.7
MD17G1196900 Malus domestica HOM05D005672 ORTHO05D003038 4.9e-21 104.8 117 42.7
Peaxi162Scf00015g00326 Petunia axillaris HOM05D005672 ORTHO05D003038 6.4e-21 104.4 122 41.8
Sed0001381 Sechium edule HOM05D005672 ORTHO05D003038 1.1e-20 103.6 108 49.1
Eucgr.J03009 Eucalyptus grandis HOM05D005672 ORTHO05D003038 1.4e-20 103.2 111 49.5
Oeu006796.1 Olea europaea HOM05D005672 ORTHO05D003038 1.4e-20 103.2 116 44.0
Prupe.3G073800 Prunus persica HOM05D005672 ORTHO05D003038 1.4e-20 103.2 116 44.8
Prupe.6G180200 Prunus persica HOM05D005672 ORTHO05D003038 2.4e-20 102.4 116 44.8
Prupe.3G072700 Prunus persica HOM05D005672 ORTHO05D003038 3.2e-20 102.1 116 44.8
Thecc.06G054500 Theobroma cacao HOM05D005672 ORTHO05D003038 3.2e-20 102.1 107 43.9
Ciclev10027568m.g Citrus clementina HOM05D005672 ORTHO05D003038 5.4e-20 101.3 116 44.8
MSTRG.22696 Avicennia marina HOM05D005672 ORTHO05D003038 9.2e-20 100.5 116 38.8
ClCG09G002230 Citrullus lanatus HOM05D005672 ORTHO05D003038 9.2e-20 100.5 116 40.5
PGR102G1467 Punica granatum HOM05D005672 ORTHO05D003038 1.2e-19 100.1 120 40.8
ECA234G3627 Erigeron canadensis HOM05D005672 ORTHO05D003038 1.6e-19 99.8 108 42.6
QL05p025003 Quercus lobata HOM05D005672 ORTHO05D003038 2.0e-19 99.4 88 54.5
Migut.I00857 Erythranthe guttata HOM05D005672 ORTHO05D003038 2.7e-19 99.0 110 42.7
SalBow2G2205 Salvia bowleyana HOM05D005672 ORTHO05D003038 2.7e-19 99.0 110 41.8
Gorai.006G099200 Gossypium raimondii HOM05D005672 ORTHO05D003038 7.8e-19 97.4 116 44.0
DCAR_016224 Daucus carota HOM05D005672 ORTHO05D003038 1.0e-18 97.1 110 40.9
CAN.G395.17 Capsicum annuum HOM05D005672 ORTHO05D003038 1.7e-18 96.3 128 41.4
Gohir.D09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 2.3e-18 95.9 116 43.1
BcaB08g34260 Brassica carinata HOM05D007482 ORTHO05D003038 3.0e-18 95.5 118 43.2
HanXRQChr10g0314951 Helianthus annuus HOM05D005672 ORTHO05D003038 3.9e-18 95.1 109 39.4
COL.COLO4_30353 Corchorus olitorius HOM05D005672 ORTHO05D003038 5.0e-18 94.7 75 58.7
Hund25654 Selenicereus undatus HOM05D005672 ORTHO05D003038 6.6e-18 94.4 106 40.6
Sopen06g025030 Solanum pennellii HOM05D005672 ORTHO05D003038 1.1e-17 93.6 122 39.3
Ciclev10027446m.g Citrus clementina HOM05D005672 ORTHO05D003038 1.5e-17 93.2 117 42.7
Solyc06g066750.3 Solanum lycopersicum HOM05D005672 ORTHO05D003038 1.9e-17 92.8 122 39.3
THA.LOC104823573 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 1.9e-17 92.8 109 39.4
Duzib192G0991 Durio zibethinus HOM05D005672 ORTHO05D003038 3.3e-17 92.0 106 42.5
Nn2g11778 Nelumbo nucifera HOM05D005672 ORTHO05D003038 3.3e-17 92.0 107 41.1
PGSC0003DMG400016538 Solanum tuberosum HOM05D005672 ORTHO05D003038 4.3e-17 91.7 122 40.2
unitig_21.g20351 Utricularia gibba HOM05D005672 ORTHO05D003038 4.3e-17 91.7 111 38.7
HanXRQChr14g0455911 Helianthus annuus HOM05D005672 ORTHO05D003038 5.6e-17 91.3 113 36.3
CSS0026145 Camellia sinensis var. sinensis HOM05D005672 ORTHO05D003038 7.3e-17 90.9 62 59.7
Atru.chr1.3244 Acer truncatum HOM05D005672 ORTHO05D003038 9.5e-17 90.5 96 51.0
Duzib235G0754 Durio zibethinus HOM05D005672 ORTHO05D003038 9.5e-17 90.5 121 36.4
Lsat_1_v5_gn_5_129980 Lactuca sativa HOM05D005672 ORTHO05D003038 9.5e-17 90.5 127 35.4
Atru.chr1.3245 Acer truncatum HOM05D005672 ORTHO05D003038 1.6e-16 89.7 108 46.3
BcaB08g34259 Brassica carinata HOM05D007482 ORTHO05D003038 1.6e-16 89.7 117 40.2
C08p47220 Brassica napus HOM05D007482 ORTHO05D003038 1.6e-16 89.7 117 40.2
BolC8t52261H Brassica oleracea HOM05D007482 ORTHO05D003038 1.6e-16 89.7 117 40.2
BolC8t52262H Brassica oleracea HOM05D007482 ORTHO05D003038 2.1e-16 89.4 117 40.2
Gohir.A09G083700 Gossypium hirsutum HOM05D005672 ORTHO05D003038 3.6e-16 88.6 86 44.2
Nitab4.5_0000351g0210 Nicotiana tabacum HOM05D005672 ORTHO05D003038 6.2e-16 87.8 133 39.1
MD09G1214600 Malus domestica HOM05D005672 ORTHO05D003038 8.1e-16 87.4 114 39.5
Sp1g11250 Schrenkiella parvula HOM05D007482 ORTHO05D003038 8.1e-16 87.4 116 41.4
MELO3C023361.2 Cucumis melo HOM05D005672 ORTHO05D003038 1.1e-15 87.0 105 40.0
BcaC01g02807 Brassica carinata HOM05D007482 ORTHO05D003038 1.8e-15 86.3 117 38.5
C03p60060 Brassica napus HOM05D007482 ORTHO05D003038 1.8e-15 86.3 117 38.5
Nitab4.5_0002327g0030 Nicotiana tabacum HOM05D005672 ORTHO05D003038 1.8e-15 86.3 134 36.6
FvH4_6g30990 Fragaria vesca HOM05D005672 ORTHO05D003038 2.3e-15 85.9 119 37.8
ClCG09G002270 Citrullus lanatus HOM05D005672 ORTHO05D003038 5.2e-15 84.7 92 42.4
Prupe.3G073000 Prunus persica HOM05D005672 ORTHO05D003038 8.9e-15 84.0 114 41.2
CARHR012970 Cardamine hirsuta HOM05D007482 ORTHO05D003038 1.2e-14 83.6 118 37.3
A06p32510 Brassica napus HOM05D007482 ORTHO05D003038 1.5e-14 83.2 117 37.6
A09p63720 Brassica napus HOM05D007482 ORTHO05D003038 1.5e-14 83.2 117 38.5
BraA09t41720Z Brassica rapa HOM05D007482 ORTHO05D003038 1.5e-14 83.2 117 38.5
Gohir.A09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 2.0e-14 82.8 118 36.4
Gohir.D09G083500 Gossypium hirsutum HOM05D005672 ORTHO05D003038 2.0e-14 82.8 118 36.4
Ciclev10026803m.g Citrus clementina HOM05D005672 ORTHO05D003038 2.6e-14 82.4 114 39.5
Gorai.006G099100 Gossypium raimondii HOM05D005672 ORTHO05D003038 4.4e-14 81.6 118 35.6
BcaC05g25121 Brassica carinata HOM05D007482 ORTHO05D003038 9.8e-14 80.5 105 39.0
ECA232G2097 Erigeron canadensis HOM05D005672 ORTHO05D003038 1.7e-13 79.7 125 33.6
Ciclev10027058m.g Citrus clementina HOM05D005672 ORTHO05D003038 2.2e-13 79.3 89 51.7
Sed0004804 Sechium edule HOM05D005672 ORTHO05D003038 2.2e-13 79.3 98 37.8
Nn8g39246 Nelumbo nucifera HOM05D005672 ORTHO05D003038 4.9e-13 78.2 115 33.9
Nn8g39245 Nelumbo nucifera HOM05D005672 ORTHO05D003038 6.4e-13 77.8 119 33.6
PSO782G2157 Papaver somniferum HOM05D005672 ORTHO05D003038 6.4e-13 77.8 117 34.2
Nn8g39240 Nelumbo nucifera HOM05D005672 ORTHO05D003038 8.3e-13 77.4 105 41.9
CARHR012960 Cardamine hirsuta HOM05D007482 ORTHO05D003038 1.1e-12 77.0 120 36.7
BolC8t52260H Brassica oleracea HOM05D007482 ORTHO05D003038 1.9e-12 76.3 130 37.7
Sp1g11270 Schrenkiella parvula HOM05D007482 ORTHO05D003038 5.4e-12 74.7 129 33.3
BolC8t52263H Brassica oleracea HOM05D007482 ORTHO05D003038 7.1e-12 74.3 107 36.4
PGR031G0360 Punica granatum HOM05D005672 ORTHO05D003038 7.1e-12 74.3 110 37.3
PGR031G3744 Punica granatum HOM05D005672 ORTHO05D003038 7.1e-12 74.3 110 37.3
A09p63730 Brassica napus HOM05D007482 ORTHO05D003038 9.2e-12 73.9 100 36.0
AT1G12663 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 1.6e-11 73.2 109 33.9
C08p47210 Brassica napus HOM05D007482 ORTHO05D003038 1.6e-11 73.2 127 37.0
Thhalv10023017m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 1.6e-11 73.2 109 34.9
AL1G24130 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 2.7e-11 72.4 111 32.4
Prupe.3G073200 Prunus persica HOM05D005672 ORTHO05D003038 2.7e-11 72.4 116 37.1
BraA06t26175Z Brassica rapa HOM05D007482 ORTHO05D003038 3.5e-11 72.0 100 35.0
BolC3t18270H Brassica oleracea HOM05D007482 ORTHO05D003038 4.6e-11 71.6 100 35.0
Duzib235G0878 Durio zibethinus HOM05D005672 ORTHO05D003038 6.0e-11 71.2 104 34.6
Sp1g11260 Schrenkiella parvula HOM05D007482 ORTHO05D003038 6.0e-11 71.2 125 36.0
Sed0008395 Sechium edule HOM05D005672 ORTHO05D003038 6.0e-11 71.2 115 34.8
A06p09020 Brassica napus HOM05D007482 ORTHO05D003038 7.8e-11 70.9 106 37.7
A09p63700 Brassica napus HOM05D007482 ORTHO05D003038 7.8e-11 70.9 129 34.1
BraA06t24091Z Brassica rapa HOM05D007482 ORTHO05D003038 7.8e-11 70.9 106 37.7
BraA09t41718Z Brassica rapa HOM05D007482 ORTHO05D003038 7.8e-11 70.9 129 34.1
BraA09t41719Z Brassica rapa HOM05D007482 ORTHO05D003038 7.8e-11 70.9 129 36.4
C08p47200 Brassica napus HOM05D007482 ORTHO05D003038 1.0e-10 70.5 129 34.1
ClCG09G002220 Citrullus lanatus HOM05D005672 ORTHO05D003038 1.0e-10 70.5 106 34.9
Nn8g39244 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.0e-10 70.5 114 36.8
SGA_v2.0_scaffold5G02600 Striga asiatica HOM05D005672 ORTHO05D003038 1.0e-10 70.5 82 37.8
BcaC05g25122 Brassica carinata HOM05D007482 ORTHO05D003038 1.3e-10 70.1 105 36.2
Ciclev10027444m.g Citrus clementina HOM05D005672 ORTHO05D003038 1.3e-10 70.1 113 38.1
C08p47230 Brassica napus HOM05D007482 ORTHO05D003038 1.7e-10 69.7 101 35.6
CAN.G438.58 Capsicum annuum HOM05D005672 ORTHO05D003038 1.7e-10 69.7 124 35.5
MELO3C023363.2 Cucumis melo HOM05D005672 ORTHO05D003038 1.7e-10 69.7 85 37.6
A09p63710 Brassica napus HOM05D007482 ORTHO05D003038 2.3e-10 69.3 133 35.3
PSO339G1026 Papaver somniferum HOM05D007482 ORTHO05D003038 2.3e-10 69.3 111 41.4
Solyc03g120290.3 Solanum lycopersicum HOM05D005672 ORTHO05D003038 2.3e-10 69.3 121 34.7
Sed0004960 Sechium edule HOM05D005672 ORTHO05D003038 3.0e-10 68.9 118 29.7
BcaB08g34258 Brassica carinata HOM05D007482 ORTHO05D003038 3.9e-10 68.6 116 33.6
C05p10620 Brassica napus HOM05D007482 ORTHO05D003038 3.9e-10 68.6 107 37.4
BolC5t29804H Brassica oleracea HOM05D007482 ORTHO05D003038 3.9e-10 68.6 107 37.4
Peaxi162Scf00207g00940 Petunia axillaris HOM05D005672 ORTHO05D003038 6.6e-10 67.8 120 40.8
Ciclev10026944m.g Citrus clementina HOM05D005672 ORTHO05D003038 1.1e-09 67.0 114 39.5
PGR031G0657 Punica granatum HOM05D005672 ORTHO05D003038 1.1e-09 67.0 112 35.7
AL1G24160 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 1.9e-09 66.2 106 34.9
MELO3C030573.2 Cucumis melo HOM05D005672 ORTHO05D003038 1.9e-09 66.2 107 32.7
Potri.003G056450 Populus trichocarpa HOM05D005672 ORTHO05D003038 1.9e-09 66.2 97 42.3
BcaB08g34257 Brassica carinata HOM05D007482 ORTHO05D003038 3.3e-09 65.5 100 35.0
BolC5t33183H Brassica oleracea HOM05D007482 ORTHO05D003038 3.3e-09 65.5 122 36.9
Thhalv10009322m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 3.3e-09 65.5 106 37.7
Nn8g39242 Nelumbo nucifera HOM05D005672 ORTHO05D003038 3.3e-09 65.5 73 43.8
Prupe.3G072600 Prunus persica HOM05D005672 ORTHO05D003038 3.3e-09 65.5 104 35.6
C08p47190 Brassica napus HOM05D007482 ORTHO05D003038 4.3e-09 65.1 111 33.3
ClCG09G002260 Citrullus lanatus HOM05D005672 ORTHO05D003038 4.3e-09 65.1 86 32.6
Thhalv10009133m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 4.3e-09 65.1 115 33.9
PSO648G0129 Papaver somniferum HOM05D007482 ORTHO05D003038 4.3e-09 65.1 104 34.6
Atru.chr1.3239 Acer truncatum HOM05D005672 ORTHO05D003038 7.3e-09 64.3 115 33.0
Carub.0004s0495 Capsella rubella HOM05D007482 ORTHO05D003038 7.3e-09 64.3 125 31.2
Thhalv10009569m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 7.3e-09 64.3 98 38.8
CiPaw.02G152000 Carya illinoinensis HOM05D005672 ORTHO05D003038 9.5e-09 63.9 115 33.0
C05p44560 Brassica napus HOM05D007482 ORTHO05D003038 1.6e-08 63.2 122 34.4
Sed0013481 Sechium edule HOM05D005672 ORTHO05D003038 1.6e-08 63.2 114 34.2
Sed0015260 Sechium edule HOM05D005672 ORTHO05D003038 1.6e-08 63.2 115 33.9
A09p35330 Brassica napus HOM05D007482 ORTHO05D003038 4.7e-08 61.6 126 31.7
Duzib235G1402 Durio zibethinus HOM05D005672 ORTHO05D003038 4.7e-08 61.6 45 48.9
Sopen03g039180 Solanum pennellii HOM05D005672 ORTHO05D003038 4.7e-08 61.6 124 32.3
MELO3C023360.2 Cucumis melo HOM05D005672 ORTHO05D003038 6.2e-08 61.2 84 39.3
Nn8g39243 Nelumbo nucifera HOM05D005672 ORTHO05D003038 6.2e-08 61.2 71 45.1
BcaC05g28380 Brassica carinata HOM05D007482 ORTHO05D003038 8.1e-08 60.8 106 37.7
C05p30030 Brassica napus HOM05D007482 ORTHO05D003038 8.1e-08 60.8 127 32.3
BolC5t29803H Brassica oleracea HOM05D007482 ORTHO05D003038 8.1e-08 60.8 151 31.8
BolC5t31740H Brassica oleracea HOM05D007482 ORTHO05D003038 8.1e-08 60.8 127 32.3
Carub.0001s1239 Capsella rubella HOM05D007482 ORTHO05D003038 8.1e-08 60.8 76 35.5
CARHR035990 Cardamine hirsuta HOM05D007482 ORTHO05D003038 8.1e-08 60.8 109 32.1
DCAR_026309 Daucus carota HOM05D005672 ORTHO05D003038 8.1e-08 60.8 98 34.7
Nn2g15314 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.1e-07 60.5 107 34.6
Nn8g39241 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.1e-07 60.5 89 38.2
BraA05t21798Z Brassica rapa HOM05D007482 ORTHO05D003038 1.4e-07 60.1 110 38.2
Carub.0001s1236 Capsella rubella HOM05D007482 ORTHO05D003038 1.4e-07 60.1 122 32.0
PSO630G0001 Papaver somniferum HOM05D007482 ORTHO05D003038 2.3e-07 59.3 94 35.1
C05p10610 Brassica napus HOM05D007482 ORTHO05D003038 3.1e-07 58.9 151 31.1
A05p29150 Brassica napus HOM05D007482 ORTHO05D003038 4.0e-07 58.5 110 37.3
BraA09t39063Z Brassica rapa HOM05D007482 ORTHO05D003038 6.8e-07 57.8 126 31.0
Ciclev10026837m.g Citrus clementina HOM05D005672 ORTHO05D003038 8.9e-07 57.4 67 47.8
CARHR012980 Cardamine hirsuta HOM05D007482 ORTHO05D003038 1.2e-06 57.0 124 30.6
Prupe.3G073100 Prunus persica HOM05D005672 ORTHO05D003038 1.5e-06 56.6 103 33.0
BraA09t41717Z Brassica rapa HOM05D007482 ORTHO05D003038 3.4e-06 55.5 42 50.0
Duzib192G0249 Durio zibethinus HOM05D005672 ORTHO05D003038 5.8e-06 54.7 86 37.2
BcaB07g32750 Brassica carinata HOM05D007482 ORTHO05D003038 7.6e-06 54.3 113 37.2
CsaV3_7G033040 Cucumis sativus L. HOM05D005672 ORTHO05D003038 7.6e-06 54.3 88 33.0
Thhalv10019821m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 9.9e-06 53.9 117 30.8


User provided reference genes

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