Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G122200 Manihot esculenta HOM05D005672 ORTHO05D003038 8.5e-63 243.4 117 100.0
Manes.04G122300 Manihot esculenta HOM05D005672 ORTHO05D003038 4.2e-62 241.1 117 99.1
Manes.04G121900 Manihot esculenta HOM05D005672 ORTHO05D003038 1.2e-48 196.4 118 84.7
Manes.04G122000 Manihot esculenta HOM05D005672 ORTHO05D003038 1.2e-48 196.4 118 84.7
Manes.04G122100 Manihot esculenta HOM05D005672 ORTHO05D003038 1.3e-47 193.0 118 83.1
Manes.04G122400 Manihot esculenta HOM05D005672 ORTHO05D003038 2.9e-47 191.8 118 78.0
Thecc.06G059000 Theobroma cacao HOM05D005672 ORTHO05D003038 2.3e-31 139.0 113 55.8
Thecc.06G084400 Theobroma cacao HOM05D005672 ORTHO05D003038 3.3e-30 135.2 112 57.1
Actinidia02490 Actinidia chinensis HOM05D005672 ORTHO05D003038 4.7e-29 131.3 114 54.4
Actinidia14259 Actinidia chinensis HOM05D005672 ORTHO05D003038 8.0e-29 130.6 114 55.3
Duzib160G0695 Durio zibethinus HOM05D005672 ORTHO05D003038 7.5e-27 124.0 105 54.3
Prupe.3G072900 Prunus persica HOM05D005672 ORTHO05D003038 1.3e-26 123.2 113 54.9
FAN05G0478 Fragaria x ananassa HOM05D005672 ORTHO05D003038 2.2e-26 122.5 106 54.7
Actinidia01798 Actinidia chinensis HOM05D005672 ORTHO05D003038 3.7e-26 121.7 107 50.5
Eucgr.J03010 Eucalyptus grandis HOM05D005672 ORTHO05D003038 3.2e-25 118.6 107 51.4
Thecc.06G084800 Theobroma cacao HOM05D005672 ORTHO05D003038 3.2e-25 118.6 114 50.0
Actinidia32765 Actinidia chinensis HOM05D005672 ORTHO05D003038 5.4e-25 117.9 107 47.7
Duzib192G0507 Durio zibethinus HOM05D005672 ORTHO05D003038 5.4e-25 117.9 111 46.8
Duzib192G0432 Durio zibethinus HOM05D005672 ORTHO05D003038 9.2e-25 117.1 111 45.9
Duzib192G0711 Durio zibethinus HOM05D005672 ORTHO05D003038 9.2e-25 117.1 111 45.9
TAR624G0127 Trochodendron aralioides HOM05D005672 ORTHO05D003038 9.2e-25 117.1 117 53.8
Thecc.06G084700 Theobroma cacao HOM05D005672 ORTHO05D003038 3.5e-24 115.2 113 49.6
Eucgr.L03103 Eucalyptus grandis HOM05D005672 ORTHO05D003038 4.6e-24 114.8 107 49.5
MD09G1214500 Malus domestica HOM05D005672 ORTHO05D003038 6.0e-24 114.4 115 49.6
vmacro18924 Vaccinium macrocarpon HOM05D005672 ORTHO05D003038 6.0e-24 114.4 123 49.6
MD17G1196900 Malus domestica HOM05D005672 ORTHO05D003038 5.0e-23 111.3 117 44.4
Prupe.3G072800 Prunus persica HOM05D005672 ORTHO05D003038 4.3e-22 108.2 112 48.2
Dinv30521 Davidia involucrata HOM05D005672 ORTHO05D003038 9.5e-22 107.1 116 49.1
Thecc.06G054500 Theobroma cacao HOM05D005672 ORTHO05D003038 1.6e-21 106.3 107 44.9
PGR102G1467 Punica granatum HOM05D005672 ORTHO05D003038 2.1e-21 105.9 120 43.3
Duzib192G0747 Durio zibethinus HOM05D005672 ORTHO05D003038 2.8e-21 105.5 99 48.5
Peaxi162Scf00015g00326 Petunia axillaris HOM05D005672 ORTHO05D003038 8.0e-21 104.0 121 42.1
Cc04_g03540 Coffea canephora HOM05D005672 ORTHO05D003038 1.1e-20 103.6 116 44.0
Dinv30519 Davidia involucrata HOM05D005672 ORTHO05D003038 1.4e-20 103.2 95 54.7
Duzib192G0281 Durio zibethinus HOM05D005672 ORTHO05D003038 1.4e-20 103.2 111 45.0
CsaV3_7G033060 Cucumis sativus L. HOM05D005672 ORTHO05D003038 1.8e-20 102.8 111 45.0
Gorai.006G099200 Gossypium raimondii HOM05D005672 ORTHO05D003038 5.2e-20 101.3 116 44.8
Eucgr.J03009 Eucalyptus grandis HOM05D005672 ORTHO05D003038 6.8e-20 100.9 110 45.5
Prupe.3G072700 Prunus persica HOM05D005672 ORTHO05D003038 6.8e-20 100.9 115 44.3
Prupe.6G180200 Prunus persica HOM05D005672 ORTHO05D003038 8.9e-20 100.5 115 44.3
Sed0001381 Sechium edule HOM05D005672 ORTHO05D003038 8.9e-20 100.5 107 46.7
Oeu006796.1 Olea europaea HOM05D005672 ORTHO05D003038 1.2e-19 100.1 115 43.5
Gohir.D09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 1.5e-19 99.8 116 44.0
QL05p025003 Quercus lobata HOM05D005672 ORTHO05D003038 1.5e-19 99.8 87 55.2
Atru.chr1.3244 Acer truncatum HOM05D005672 ORTHO05D003038 5.8e-19 97.8 95 52.6
COL.COLO4_30353 Corchorus olitorius HOM05D005672 ORTHO05D003038 5.8e-19 97.8 74 54.1
ClCG09G002230 Citrullus lanatus HOM05D005672 ORTHO05D003038 9.8e-19 97.1 111 42.3
Migut.I00857 Erythranthe guttata HOM05D005672 ORTHO05D003038 1.3e-18 96.7 109 41.3
Ciclev10027568m.g Citrus clementina HOM05D005672 ORTHO05D003038 2.9e-18 95.5 116 46.6
FvH4_6g30990 Fragaria vesca HOM05D005672 ORTHO05D003038 3.7e-18 95.1 119 42.0
Prupe.3G073800 Prunus persica HOM05D005672 ORTHO05D003038 3.7e-18 95.1 116 44.8
ECA234G3627 Erigeron canadensis HOM05D005672 ORTHO05D003038 4.9e-18 94.7 95 47.4
Duzib192G0991 Durio zibethinus HOM05D005672 ORTHO05D003038 1.9e-17 92.8 106 43.4
SalBow2G2205 Salvia bowleyana HOM05D005672 ORTHO05D003038 3.2e-17 92.0 109 38.5
Hund25654 Selenicereus undatus HOM05D005672 ORTHO05D003038 4.1e-17 91.7 107 41.1
Ciclev10027446m.g Citrus clementina HOM05D005672 ORTHO05D003038 5.4e-17 91.3 117 43.6
HanXRQChr10g0314951 Helianthus annuus HOM05D005672 ORTHO05D003038 5.4e-17 91.3 117 39.3
Gohir.A09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 1.2e-16 90.1 118 39.0
Gohir.D09G083500 Gossypium hirsutum HOM05D005672 ORTHO05D003038 1.6e-16 89.7 118 39.0
DCAR_016224 Daucus carota HOM05D005672 ORTHO05D003038 2.1e-16 89.4 110 38.2
Gorai.006G099100 Gossypium raimondii HOM05D005672 ORTHO05D003038 3.5e-16 88.6 118 38.1
MSTRG.22696 Avicennia marina HOM05D005672 ORTHO05D003038 4.6e-16 88.2 116 37.1
Duzib235G0754 Durio zibethinus HOM05D005672 ORTHO05D003038 4.6e-16 88.2 121 34.7
Lsat_1_v5_gn_5_129980 Lactuca sativa HOM05D005672 ORTHO05D003038 4.6e-16 88.2 127 37.0
THA.LOC104823572 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 4.6e-16 88.2 116 40.5
HanXRQChr14g0455911 Helianthus annuus HOM05D005672 ORTHO05D003038 7.8e-16 87.4 111 37.8
Gohir.A09G083700 Gossypium hirsutum HOM05D005672 ORTHO05D003038 1.0e-15 87.0 83 43.4
CAN.G395.17 Capsicum annuum HOM05D005672 ORTHO05D003038 3.0e-15 85.5 128 36.7
MELO3C023361.2 Cucumis melo HOM05D005672 ORTHO05D003038 8.6e-15 84.0 97 43.3
Sopen06g025030 Solanum pennellii HOM05D005672 ORTHO05D003038 8.6e-15 84.0 121 35.5
Solyc06g066750.3 Solanum lycopersicum HOM05D005672 ORTHO05D003038 1.5e-14 83.2 121 35.5
ClCG09G002270 Citrullus lanatus HOM05D005672 ORTHO05D003038 1.9e-14 82.8 98 38.8
Nitab4.5_0000351g0210 Nicotiana tabacum HOM05D005672 ORTHO05D003038 3.3e-14 82.0 133 37.6
PGSC0003DMG400016538 Solanum tuberosum HOM05D005672 ORTHO05D003038 3.3e-14 82.0 121 36.4
CSS0026145 Camellia sinensis var. sinensis HOM05D005672 ORTHO05D003038 4.3e-14 81.6 62 53.2
Nn8g39240 Nelumbo nucifera HOM05D005672 ORTHO05D003038 4.3e-14 81.6 112 42.0
Prupe.3G073000 Prunus persica HOM05D005672 ORTHO05D003038 5.6e-14 81.3 113 40.7
MD09G1214600 Malus domestica HOM05D005672 ORTHO05D003038 7.3e-14 80.9 114 39.5
THA.LOC104823573 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 7.3e-14 80.9 109 39.4
Nn8g39246 Nelumbo nucifera HOM05D005672 ORTHO05D003038 9.5e-14 80.5 73 47.9
Ciclev10026803m.g Citrus clementina HOM05D005672 ORTHO05D003038 1.2e-13 80.1 113 37.2
Duzib235G0878 Durio zibethinus HOM05D005672 ORTHO05D003038 3.6e-13 78.6 104 35.6
Nitab4.5_0002327g0030 Nicotiana tabacum HOM05D005672 ORTHO05D003038 3.6e-13 78.6 134 36.6
Prupe.3G072600 Prunus persica HOM05D005672 ORTHO05D003038 3.6e-13 78.6 104 40.4
Nn8g39245 Nelumbo nucifera HOM05D005672 ORTHO05D003038 4.7e-13 78.2 111 40.5
PGR031G0360 Punica granatum HOM05D005672 ORTHO05D003038 8.1e-13 77.4 110 39.1
PGR031G3744 Punica granatum HOM05D005672 ORTHO05D003038 8.1e-13 77.4 110 39.1
Nn2g11778 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.1e-12 77.0 107 37.4
Nn8g39244 Nelumbo nucifera HOM05D005672 ORTHO05D003038 2.3e-12 75.9 113 36.3
PSO782G2157 Papaver somniferum HOM05D005672 ORTHO05D003038 2.3e-12 75.9 113 34.5
Sed0008395 Sechium edule HOM05D005672 ORTHO05D003038 2.3e-12 75.9 114 36.0
Nn8g39241 Nelumbo nucifera HOM05D005672 ORTHO05D003038 8.9e-12 73.9 108 40.7
Atru.chr1.3245 Acer truncatum HOM05D005672 ORTHO05D003038 1.2e-11 73.6 107 36.4
Ciclev10027058m.g Citrus clementina HOM05D005672 ORTHO05D003038 1.5e-11 73.2 88 45.5
Prupe.3G073200 Prunus persica HOM05D005672 ORTHO05D003038 1.5e-11 73.2 112 36.6
ECA232G2097 Erigeron canadensis HOM05D005672 ORTHO05D003038 2.6e-11 72.4 125 32.0
CARHR012970 Cardamine hirsuta HOM05D007482 ORTHO05D003038 4.4e-11 71.6 118 34.7
Sed0004804 Sechium edule HOM05D005672 ORTHO05D003038 4.4e-11 71.6 99 37.4
A09p63720 Brassica napus HOM05D007482 ORTHO05D003038 7.5e-11 70.9 119 37.0
BraA09t41720Z Brassica rapa HOM05D007482 ORTHO05D003038 7.5e-11 70.9 119 37.0
Nn8g39242 Nelumbo nucifera HOM05D005672 ORTHO05D003038 7.5e-11 70.9 69 49.3
PSO339G1026 Papaver somniferum HOM05D007482 ORTHO05D003038 7.5e-11 70.9 106 38.7
PSO339G2623 Papaver somniferum HOM05D007482 ORTHO05D003038 7.5e-11 70.9 106 36.8
C08p47200 Brassica napus HOM05D007482 ORTHO05D003038 1.7e-10 69.7 129 33.3
BolC8t52260H Brassica oleracea HOM05D007482 ORTHO05D003038 1.7e-10 69.7 133 33.1
ClCG09G002220 Citrullus lanatus HOM05D005672 ORTHO05D003038 2.2e-10 69.3 97 38.1
BcaC05g25121 Brassica carinata HOM05D007482 ORTHO05D003038 4.9e-10 68.2 106 38.7
A09p63700 Brassica napus HOM05D007482 ORTHO05D003038 6.4e-10 67.8 129 32.6
BraA09t41718Z Brassica rapa HOM05D007482 ORTHO05D003038 6.4e-10 67.8 129 32.6
MELO3C030573.2 Cucumis melo HOM05D005672 ORTHO05D003038 6.4e-10 67.8 106 33.0
SGA_v2.0_scaffold5G02600 Striga asiatica HOM05D005672 ORTHO05D003038 6.4e-10 67.8 80 38.8
C08p47210 Brassica napus HOM05D007482 ORTHO05D003038 8.3e-10 67.4 130 32.3
Ciclev10026944m.g Citrus clementina HOM05D005672 ORTHO05D003038 8.3e-10 67.4 113 38.9
PGR031G0657 Punica granatum HOM05D005672 ORTHO05D003038 8.3e-10 67.4 111 37.8
AL1G24130 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 1.1e-09 67.0 111 31.5
AT1G12663 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 1.1e-09 67.0 112 32.1
Ciclev10027444m.g Citrus clementina HOM05D005672 ORTHO05D003038 1.1e-09 67.0 113 37.2
Nn8g39243 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.1e-09 67.0 68 45.6
Sed0013481 Sechium edule HOM05D005672 ORTHO05D003038 1.1e-09 67.0 114 35.1
Atru.chr1.3239 Acer truncatum HOM05D005672 ORTHO05D003038 1.4e-09 66.6 115 34.8
MELO3C023363.2 Cucumis melo HOM05D005672 ORTHO05D003038 1.4e-09 66.6 86 36.0
BraA09t41719Z Brassica rapa HOM05D007482 ORTHO05D003038 2.4e-09 65.9 132 31.8
Nn2g15314 Nelumbo nucifera HOM05D005672 ORTHO05D003038 2.4e-09 65.9 106 38.7
PSO339G4707 Papaver somniferum HOM05D007482 ORTHO05D003038 2.4e-09 65.9 115 37.4
PSO648G0129 Papaver somniferum HOM05D007482 ORTHO05D003038 2.4e-09 65.9 103 33.0
CAN.G438.58 Capsicum annuum HOM05D005672 ORTHO05D003038 4.1e-09 65.1 123 31.7
Potri.003G056450 Populus trichocarpa HOM05D005672 ORTHO05D003038 4.1e-09 65.1 96 38.5
PSO339G0096 Papaver somniferum HOM05D007482 ORTHO05D003038 5.4e-09 64.7 108 37.0
A09p63710 Brassica napus HOM05D007482 ORTHO05D003038 7.1e-09 64.3 136 30.9
CiPaw.02G152000 Carya illinoinensis HOM05D005672 ORTHO05D003038 7.1e-09 64.3 115 33.9
Sed0004960 Sechium edule HOM05D005672 ORTHO05D003038 9.2e-09 63.9 117 28.2
Solyc03g120290.3 Solanum lycopersicum HOM05D005672 ORTHO05D003038 9.2e-09 63.9 120 30.0
Thhalv10023017m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 2.1e-08 62.8 111 34.2
Duzib235G1402 Durio zibethinus HOM05D005672 ORTHO05D003038 4.6e-08 61.6 51 45.1
Peaxi162Scf00207g00940 Petunia axillaris HOM05D005672 ORTHO05D003038 4.6e-08 61.6 121 32.2
PSO791G0001 Papaver somniferum HOM05D048766 ORTHO05D003038 1.0e-07 60.5 116 33.6
PSO832G3804 Papaver somniferum HOM05D048766 ORTHO05D003038 1.0e-07 60.5 116 33.6
Aqoxy7G01810 Aquilegia oxysepala HOM05D005672 ORTHO05D003038 1.7e-07 59.7 106 34.0
MELO3C028179.2 Cucumis melo HOM05D028203 ORTHO05D029165 1.7e-07 59.7 93 37.6
PSO630G0001 Papaver somniferum HOM05D007482 ORTHO05D003038 2.3e-07 59.3 93 33.3
Sp1g11260 Schrenkiella parvula HOM05D007482 ORTHO05D003038 2.3e-07 59.3 125 28.8
GSVIVG01017351001 Vitis vinifera HOM05D009909 ORTHO05D011748 3.0e-07 58.9 100 33.0
A09p35330 Brassica napus HOM05D007482 ORTHO05D003038 3.9e-07 58.5 116 30.2
C05p30030 Brassica napus HOM05D007482 ORTHO05D003038 3.9e-07 58.5 127 31.5
BolC5t31740H Brassica oleracea HOM05D007482 ORTHO05D003038 3.9e-07 58.5 127 31.5
Thhalv10009133m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 3.9e-07 58.5 115 31.3
Carub.0001s1239 Capsella rubella HOM05D007482 ORTHO05D003038 6.6e-07 57.8 74 36.5
Sed0007263 Sechium edule HOM05D005672 ORTHO05D003038 6.6e-07 57.8 88 36.4
Duzib192G0249 Durio zibethinus HOM05D005672 ORTHO05D003038 8.6e-07 57.4 85 35.3
CARHR035990 Cardamine hirsuta HOM05D007482 ORTHO05D003038 1.5e-06 56.6 110 31.8
Carub.0004s0495 Capsella rubella HOM05D007482 ORTHO05D003038 1.9e-06 56.2 125 28.8
C08p47230 Brassica napus HOM05D007482 ORTHO05D003038 2.5e-06 55.8 100 30.0
Sopen03g039180 Solanum pennellii HOM05D005672 ORTHO05D003038 2.5e-06 55.8 123 29.3
C05p10610 Brassica napus HOM05D007482 ORTHO05D003038 3.3e-06 55.5 151 27.2
BolC5t29803H Brassica oleracea HOM05D007482 ORTHO05D003038 3.3e-06 55.5 151 27.2
DCAR_026309 Daucus carota HOM05D005672 ORTHO05D003038 3.3e-06 55.5 99 31.3
Migut.I00852 Erythranthe guttata HOM05D005672 ORTHO05D003038 4.3e-06 55.1 80 40.0
Prupe.3G073100 Prunus persica HOM05D005672 ORTHO05D003038 4.3e-06 55.1 103 34.0
BraA09t39063Z Brassica rapa HOM05D007482 ORTHO05D003038 5.6e-06 54.7 116 29.3
Aqoxy4G01164 Aquilegia oxysepala HOM05D007540 ORTHO05D009531 9.5e-06 53.9 113 31.9
MELO3C024223.2 Cucumis melo HOM05D028203 ORTHO05D029165 9.5e-06 53.9 65 38.5
GSVIVG01035739001 Vitis vinifera HOM05D009909 ORTHO05D011748 9.5e-06 53.9 92 35.9


User provided reference genes

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