Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G121900 Manihot esculenta HOM05D005672 ORTHO05D003038 1.7e-55 219.2 118 100.0
Manes.04G122000 Manihot esculenta HOM05D005672 ORTHO05D003038 1.7e-55 219.2 118 100.0
Manes.04G122100 Manihot esculenta HOM05D005672 ORTHO05D003038 1.9e-54 215.7 118 98.3
Manes.04G122200 Manihot esculenta HOM05D005672 ORTHO05D003038 7.0e-49 197.2 118 84.7
Manes.04G122300 Manihot esculenta HOM05D005672 ORTHO05D003038 7.0e-49 197.2 118 84.7
Manes.04G122400 Manihot esculenta HOM05D005672 ORTHO05D003038 4.4e-43 177.9 118 73.7
Thecc.06G059000 Theobroma cacao HOM05D005672 ORTHO05D003038 1.0e-23 113.6 114 50.9
Actinidia02490 Actinidia chinensis HOM05D005672 ORTHO05D003038 3.0e-23 112.1 115 49.6
Actinidia14259 Actinidia chinensis HOM05D005672 ORTHO05D003038 5.1e-23 111.3 115 50.4
Thecc.06G084400 Theobroma cacao HOM05D005672 ORTHO05D003038 7.3e-22 107.5 113 48.7
Duzib160G0695 Durio zibethinus HOM05D005672 ORTHO05D003038 5.3e-20 101.3 106 50.0
Eucgr.J03010 Eucalyptus grandis HOM05D005672 ORTHO05D003038 2.0e-19 99.4 108 48.1
Duzib192G0507 Durio zibethinus HOM05D005672 ORTHO05D003038 2.6e-19 99.0 112 43.8
COL.COLO4_30353 Corchorus olitorius HOM05D005672 ORTHO05D003038 5.8e-19 97.8 71 59.2
Duzib192G0432 Durio zibethinus HOM05D005672 ORTHO05D003038 5.8e-19 97.8 112 42.9
Duzib192G0711 Durio zibethinus HOM05D005672 ORTHO05D003038 5.8e-19 97.8 112 42.9
Prupe.3G072900 Prunus persica HOM05D005672 ORTHO05D003038 7.6e-19 97.4 114 50.0
Dinv30521 Davidia involucrata HOM05D005672 ORTHO05D003038 1.7e-18 96.3 117 53.0
FAN05G0478 Fragaria x ananassa HOM05D005672 ORTHO05D003038 1.7e-18 96.3 107 48.6
Thecc.06G084700 Theobroma cacao HOM05D005672 ORTHO05D003038 1.7e-18 96.3 113 42.5
Thecc.06G084800 Theobroma cacao HOM05D005672 ORTHO05D003038 1.7e-18 96.3 114 42.1
Eucgr.L03103 Eucalyptus grandis HOM05D005672 ORTHO05D003038 2.9e-18 95.5 108 46.3
TAR624G0127 Trochodendron aralioides HOM05D005672 ORTHO05D003038 2.9e-18 95.5 118 49.2
Actinidia01798 Actinidia chinensis HOM05D005672 ORTHO05D003038 3.8e-18 95.1 108 44.4
Sed0001381 Sechium edule HOM05D005672 ORTHO05D003038 1.1e-17 93.6 108 50.9
Actinidia32765 Actinidia chinensis HOM05D005672 ORTHO05D003038 3.2e-17 92.0 108 43.5
Eucgr.J03009 Eucalyptus grandis HOM05D005672 ORTHO05D003038 4.2e-17 91.7 111 47.7
MD09G1214500 Malus domestica HOM05D005672 ORTHO05D003038 5.4e-17 91.3 116 45.7
FvH4_6g30990 Fragaria vesca HOM05D005672 ORTHO05D003038 2.1e-16 89.4 120 49.2
Ciclev10027568m.g Citrus clementina HOM05D005672 ORTHO05D003038 7.9e-16 87.4 115 43.5
Prupe.3G072800 Prunus persica HOM05D005672 ORTHO05D003038 1.3e-15 86.7 112 40.2
vmacro18924 Vaccinium macrocarpon HOM05D005672 ORTHO05D003038 1.3e-15 86.7 124 44.4
MD17G1196900 Malus domestica HOM05D005672 ORTHO05D003038 1.8e-15 86.3 117 37.6
Ciclev10027446m.g Citrus clementina HOM05D005672 ORTHO05D003038 2.3e-15 85.9 116 41.4
PGR102G1467 Punica granatum HOM05D005672 ORTHO05D003038 8.7e-15 84.0 121 38.8
Prupe.3G073800 Prunus persica HOM05D005672 ORTHO05D003038 1.1e-14 83.6 116 40.5
Duzib192G0281 Durio zibethinus HOM05D005672 ORTHO05D003038 2.5e-14 82.4 112 39.3
Thecc.06G054500 Theobroma cacao HOM05D005672 ORTHO05D003038 2.5e-14 82.4 108 39.8
Cc04_g03540 Coffea canephora HOM05D005672 ORTHO05D003038 3.3e-14 82.0 117 39.3
CsaV3_7G033060 Cucumis sativus L. HOM05D005672 ORTHO05D003038 3.3e-14 82.0 77 48.1
Duzib192G0747 Durio zibethinus HOM05D005672 ORTHO05D003038 3.3e-14 82.0 100 44.0
Nn8g39246 Nelumbo nucifera HOM05D005672 ORTHO05D003038 3.3e-14 82.0 115 43.5
Peaxi162Scf00015g00326 Petunia axillaris HOM05D005672 ORTHO05D003038 3.3e-14 82.0 122 37.7
CSS0026145 Camellia sinensis var. sinensis HOM05D005672 ORTHO05D003038 4.3e-14 81.6 62 53.2
Gorai.006G099200 Gossypium raimondii HOM05D005672 ORTHO05D003038 9.6e-14 80.5 116 38.8
Prupe.3G072700 Prunus persica HOM05D005672 ORTHO05D003038 1.3e-13 80.1 116 37.9
Prupe.6G180200 Prunus persica HOM05D005672 ORTHO05D003038 1.3e-13 80.1 116 37.9
Dinv30519 Davidia involucrata HOM05D005672 ORTHO05D003038 1.6e-13 79.7 95 44.2
Gohir.D09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 2.8e-13 79.0 116 37.9
Oeu006796.1 Olea europaea HOM05D005672 ORTHO05D003038 3.7e-13 78.6 116 38.8
Ciclev10026803m.g Citrus clementina HOM05D005672 ORTHO05D003038 1.1e-12 77.0 114 45.6
ECA234G3627 Erigeron canadensis HOM05D005672 ORTHO05D003038 1.4e-12 76.6 79 45.6
Atru.chr1.3244 Acer truncatum HOM05D005672 ORTHO05D003038 1.8e-12 76.3 96 44.8
THA.LOC104823572 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 1.8e-12 76.3 116 37.1
Duzib235G0754 Durio zibethinus HOM05D005672 ORTHO05D003038 3.1e-12 75.5 121 31.4
QL05p025003 Quercus lobata HOM05D005672 ORTHO05D003038 5.3e-12 74.7 88 48.9
Gohir.A09G083700 Gossypium hirsutum HOM05D005672 ORTHO05D003038 6.9e-12 74.3 70 42.9
Gohir.A09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 9.0e-12 73.9 118 36.4
Gohir.D09G083500 Gossypium hirsutum HOM05D005672 ORTHO05D003038 9.0e-12 73.9 118 36.4
Duzib192G0991 Durio zibethinus HOM05D005672 ORTHO05D003038 1.2e-11 73.6 106 38.7
Migut.I00857 Erythranthe guttata HOM05D005672 ORTHO05D003038 1.2e-11 73.6 110 35.5
ClCG09G002230 Citrullus lanatus HOM05D005672 ORTHO05D003038 1.5e-11 73.2 112 36.6
DCAR_016224 Daucus carota HOM05D005672 ORTHO05D003038 2.0e-11 72.8 87 37.9
Gorai.006G099100 Gossypium raimondii HOM05D005672 ORTHO05D003038 2.0e-11 72.8 118 35.6
Hund25654 Selenicereus undatus HOM05D005672 ORTHO05D003038 7.6e-11 70.9 66 48.5
HanXRQChr10g0314951 Helianthus annuus HOM05D005672 ORTHO05D003038 1.3e-10 70.1 76 42.1
SalBow2G2205 Salvia bowleyana HOM05D005672 ORTHO05D003038 1.3e-10 70.1 110 33.6
Prupe.3G073000 Prunus persica HOM05D005672 ORTHO05D003038 1.7e-10 69.7 113 38.1
Nn8g39241 Nelumbo nucifera HOM05D005672 ORTHO05D003038 2.9e-10 68.9 69 47.8
Lsat_1_v5_gn_5_129980 Lactuca sativa HOM05D005672 ORTHO05D003038 3.8e-10 68.6 85 38.8
HanXRQChr14g0455911 Helianthus annuus HOM05D005672 ORTHO05D003038 4.9e-10 68.2 78 38.5
Nn8g39242 Nelumbo nucifera HOM05D005672 ORTHO05D003038 4.9e-10 68.2 69 46.4
Nn8g39243 Nelumbo nucifera HOM05D005672 ORTHO05D003038 6.4e-10 67.8 68 47.1
Ciclev10026944m.g Citrus clementina HOM05D005672 ORTHO05D003038 8.4e-10 67.4 114 46.5
PGR031G0360 Punica granatum HOM05D005672 ORTHO05D003038 8.4e-10 67.4 111 42.3
PGR031G3744 Punica granatum HOM05D005672 ORTHO05D003038 8.4e-10 67.4 111 42.3
MSTRG.22696 Avicennia marina HOM05D005672 ORTHO05D003038 1.4e-09 66.6 116 28.4
ClCG09G002270 Citrullus lanatus HOM05D005672 ORTHO05D003038 1.4e-09 66.6 78 41.0
Prupe.3G072600 Prunus persica HOM05D005672 ORTHO05D003038 2.4e-09 65.9 105 39.0
Ciclev10027058m.g Citrus clementina HOM05D005672 ORTHO05D003038 5.5e-09 64.7 89 49.4
MD09G1214600 Malus domestica HOM05D005672 ORTHO05D003038 7.1e-09 64.3 114 33.3
Nn8g39240 Nelumbo nucifera HOM05D005672 ORTHO05D003038 7.1e-09 64.3 69 43.5
PSO782G2157 Papaver somniferum HOM05D005672 ORTHO05D003038 7.1e-09 64.3 113 32.7
Nn2g11778 Nelumbo nucifera HOM05D005672 ORTHO05D003038 9.3e-09 63.9 107 33.6
THA.LOC104823573 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 9.3e-09 63.9 68 44.1
Nn8g39245 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.2e-08 63.5 112 36.6
MELO3C023361.2 Cucumis melo HOM05D005672 ORTHO05D003038 1.6e-08 63.2 63 46.0
Atru.chr1.3239 Acer truncatum HOM05D005672 ORTHO05D003038 2.1e-08 62.8 115 36.5
CAN.G395.17 Capsicum annuum HOM05D005672 ORTHO05D003038 2.1e-08 62.8 128 31.2
Duzib235G0878 Durio zibethinus HOM05D005672 ORTHO05D003038 3.5e-08 62.0 104 31.7
Nn8g39244 Nelumbo nucifera HOM05D005672 ORTHO05D003038 3.5e-08 62.0 114 34.2
PGR031G0657 Punica granatum HOM05D005672 ORTHO05D003038 3.5e-08 62.0 48 54.2
Sed0008395 Sechium edule HOM05D005672 ORTHO05D003038 3.5e-08 62.0 115 32.2
Duzib235G1402 Durio zibethinus HOM05D005672 ORTHO05D003038 4.6e-08 61.6 51 45.1
Sopen06g025030 Solanum pennellii HOM05D005672 ORTHO05D003038 4.6e-08 61.6 121 29.8
Thhalv10023017m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 7.9e-08 60.8 66 42.4
Nitab4.5_0000351g0210 Nicotiana tabacum HOM05D005672 ORTHO05D003038 7.9e-08 60.8 133 32.3
Solyc06g066750.3 Solanum lycopersicum HOM05D005672 ORTHO05D003038 7.9e-08 60.8 121 29.8
CAN.G438.58 Capsicum annuum HOM05D005672 ORTHO05D003038 1.0e-07 60.5 124 37.9
BcaC05g25121 Brassica carinata HOM05D007482 ORTHO05D003038 1.3e-07 60.1 106 35.8
BolC8t52260H Brassica oleracea HOM05D007482 ORTHO05D003038 1.3e-07 60.1 53 54.7
AL1G24130 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 1.8e-07 59.7 68 39.7
Prupe.3G073200 Prunus persica HOM05D005672 ORTHO05D003038 1.8e-07 59.7 113 31.9
AT1G12663 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 2.3e-07 59.3 67 40.3
PSO339G1026 Papaver somniferum HOM05D007482 ORTHO05D003038 2.3e-07 59.3 106 35.8
PSO339G2623 Papaver somniferum HOM05D007482 ORTHO05D003038 2.3e-07 59.3 106 34.0
Atru.chr1.3245 Acer truncatum HOM05D005672 ORTHO05D003038 3.0e-07 58.9 58 46.6
MELO3C030573.2 Cucumis melo HOM05D005672 ORTHO05D003038 3.9e-07 58.5 107 36.4
Carub.0001s1239 Capsella rubella HOM05D007482 ORTHO05D003038 6.7e-07 57.8 74 36.5
CARHR012970 Cardamine hirsuta HOM05D007482 ORTHO05D003038 6.7e-07 57.8 118 31.4
Nitab4.5_0002327g0030 Nicotiana tabacum HOM05D005672 ORTHO05D003038 6.7e-07 57.8 132 31.1
C08p47200 Brassica napus HOM05D007482 ORTHO05D003038 8.7e-07 57.4 74 37.8
C08p47210 Brassica napus HOM05D007482 ORTHO05D003038 8.7e-07 57.4 42 54.8
Ciclev10027444m.g Citrus clementina HOM05D005672 ORTHO05D003038 8.7e-07 57.4 113 33.6
MELO3C023363.2 Cucumis melo HOM05D005672 ORTHO05D003038 8.7e-07 57.4 64 42.2
A09p63700 Brassica napus HOM05D007482 ORTHO05D003038 1.1e-06 57.0 74 37.8
BraA09t41718Z Brassica rapa HOM05D007482 ORTHO05D003038 1.1e-06 57.0 74 37.8
ECA232G2097 Erigeron canadensis HOM05D005672 ORTHO05D003038 1.1e-06 57.0 126 29.4
A09p63710 Brassica napus HOM05D007482 ORTHO05D003038 1.9e-06 56.2 42 54.8
A09p63720 Brassica napus HOM05D007482 ORTHO05D003038 1.9e-06 56.2 119 32.8
BraA09t41719Z Brassica rapa HOM05D007482 ORTHO05D003038 1.9e-06 56.2 42 54.8
BraA09t41720Z Brassica rapa HOM05D007482 ORTHO05D003038 1.9e-06 56.2 119 32.8
Carub.0004s0495 Capsella rubella HOM05D007482 ORTHO05D003038 1.9e-06 56.2 79 35.4
Sed0004804 Sechium edule HOM05D005672 ORTHO05D003038 1.9e-06 56.2 65 40.0
Sed0004960 Sechium edule HOM05D005672 ORTHO05D003038 3.3e-06 55.5 71 33.8
Thhalv10009133m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 5.6e-06 54.7 51 47.1
Sed0013481 Sechium edule HOM05D005672 ORTHO05D003038 5.6e-06 54.7 110 30.9
CARHR012980 Cardamine hirsuta HOM05D007482 ORTHO05D003038 9.6e-06 53.9 52 42.3


User provided reference genes

Program Settings