Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G121450 Manihot esculenta HOM05D004831 ORTHO05D003975 2.3e-268 928.3 473 100.0
Manes.11G052100 Manihot esculenta HOM05D004831 ORTHO05D003975 1.1e-145 520.8 548 55.5
Potri.003G056600 Populus trichocarpa HOM05D004831 ORTHO05D003975 2.9e-85 320.1 511 41.1
Sabra03G0032100 Salix brachista HOM05D004831 ORTHO05D003975 1.8e-79 300.8 537 37.8
TWI18G0228 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 1.6e-72 277.7 481 38.7
Ciclev10024870m.g Citrus clementina HOM05D004831 ORTHO05D003975 5.8e-70 269.2 563 35.3
GSVIVG01017152001 Vitis vinifera HOM05D004831 ORTHO05D003975 2.9e-69 266.9 526 36.7
Dinv30528 Davidia involucrata HOM05D004831 ORTHO05D003975 1.1e-68 265.0 553 36.0
Duzib235G0180 Durio zibethinus HOM05D004831 ORTHO05D003975 1.1e-68 265.0 403 41.7
TWI12G0693 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 1.6e-67 261.2 480 38.5
Potri.001G178200 Populus trichocarpa HOM05D004831 ORTHO05D003975 1.9e-65 254.2 552 36.2
Cpa.g.sc10.161 Carica papaya HOM05D004831 ORTHO05D003975 2.8e-64 250.4 356 42.7
Atru.chr1.3226 Acer truncatum HOM05D004831 ORTHO05D003975 6.9e-63 245.7 513 34.9
Gorai.011G078100 Gossypium raimondii HOM05D004831 ORTHO05D003975 3.8e-61 240.0 388 41.0
Gohir.D10G072500 Gossypium hirsutum HOM05D004831 ORTHO05D003975 1.4e-60 238.0 384 41.1
Gohir.A10G079000 Gossypium hirsutum HOM05D004831 ORTHO05D003975 4.6e-59 233.0 388 39.9
Thecc.06G083000 Theobroma cacao HOM05D004831 ORTHO05D003975 7.9e-59 232.3 388 40.5
TAR374G0326 Trochodendron aralioides HOM05D004831 ORTHO05D003975 3.0e-58 230.3 476 34.9
TAR626G1756 Trochodendron aralioides HOM05D004831 ORTHO05D003975 3.0e-58 230.3 476 34.9
Prupe.3G073700 Prunus persica HOM05D004831 ORTHO05D003975 3.9e-58 229.9 533 34.3
CiPaw.02G152200 Carya illinoinensis HOM05D004831 ORTHO05D003975 2.5e-57 227.3 388 38.7
Dinv38059 Davidia involucrata HOM05D004831 ORTHO05D003975 2.2e-56 224.2 410 37.3
QL05p025363 Quercus lobata HOM05D004831 ORTHO05D003975 4.1e-55 219.9 499 34.3
COL.COLO4_30332 Corchorus olitorius HOM05D004831 ORTHO05D003975 2.2e-53 214.2 359 38.7
Actinidia15826 Actinidia chinensis HOM05D004831 ORTHO05D003975 2.9e-53 213.8 445 34.4
Cfa002050 Carpinus fangiana HOM05D004831 ORTHO05D003975 2.9e-53 213.8 388 37.1
Actinidia01793 Actinidia chinensis HOM05D004831 ORTHO05D003975 3.8e-53 213.4 505 32.9
ClCG09G002300 Citrullus lanatus HOM05D004831 ORTHO05D003975 6.5e-53 212.6 540 34.1
TAR383G0472 Trochodendron aralioides HOM05D004831 ORTHO05D003975 6.1e-51 206.1 479 32.6
MELO3C023366.2 Cucumis melo HOM05D004831 ORTHO05D003975 1.0e-50 205.3 539 34.1
Oeu024063.2 Olea europaea HOM05D004831 ORTHO05D003975 9.7e-49 198.7 393 33.6
CsaV3_7G033010 Cucumis sativus L. HOM05D004831 ORTHO05D003975 2.8e-48 197.2 544 34.9
Hma1.2p1_0323F.1_g125270 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 1.8e-47 194.5 493 32.0
Hma1.2p1_2171F.1_g315970 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 1.8e-47 194.5 493 32.0
CANSAT56G2043 Cannabis sativa HOM05D004831 ORTHO05D003975 1.5e-46 191.4 535 31.8
Migut.I00846 Erythranthe guttata HOM05D004831 ORTHO05D003975 4.5e-46 189.9 421 32.1
CSS0014524 Camellia sinensis var. sinensis HOM05D004831 ORTHO05D003975 7.7e-46 189.1 352 39.8
Hma1.2p1_0682F.1_g202670 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 2.9e-45 187.2 448 33.5
Lalb_Chr24g0395761 Lupinus albus HOM05D004831 ORTHO05D003975 1.4e-44 184.9 446 33.4
Glyma.13G360700 Glycine max HOM05D004831 ORTHO05D003975 1.9e-44 184.5 380 35.8
Sed0027172 Sechium edule HOM05D004831 ORTHO05D003975 1.9e-44 184.5 548 32.8
Ca_24215_v3 Cicer arietinum L. HOM05D004831 ORTHO05D003975 4.2e-44 183.3 388 37.1
Gorai.006G099900 Gossypium raimondii HOM05D004831 ORTHO05D003975 9.4e-44 182.2 304 40.8
MSTRG.22702 Avicennia marina HOM05D004831 ORTHO05D003975 1.2e-43 181.8 517 30.6
PGR102G0340 Punica granatum HOM05D004831 ORTHO05D003975 2.7e-43 180.6 516 31.2
Gohir.A09G084100 Gossypium hirsutum HOM05D004831 ORTHO05D003975 4.7e-43 179.9 313 39.9
Peaxi162Scf00015g00247 Petunia axillaris HOM05D004831 ORTHO05D003975 4.7e-43 179.9 374 33.2
Gohir.D09G083900 Gossypium hirsutum HOM05D004831 ORTHO05D003975 1.0e-42 178.7 304 40.1
Glyma.15G013200 Glycine max HOM05D004831 ORTHO05D003975 2.3e-42 177.6 382 34.8
Lj3g0022365 Lotus japonicus HOM05D004831 ORTHO05D003975 2.3e-42 177.6 436 35.1
Duzib160G0042 Durio zibethinus HOM05D004831 ORTHO05D003975 1.5e-41 174.9 277 44.4
PGSC0003DMG400002560 Solanum tuberosum HOM05D004831 ORTHO05D003975 2.6e-41 174.1 502 31.3
Nn8g39278 Nelumbo nucifera HOM05D004831 ORTHO05D003975 3.3e-41 173.7 499 29.9
Medtr8g467560 Medicago truncatula HOM05D004831 ORTHO05D003975 5.7e-41 172.9 398 34.7
Rhsim08G0218700 Rhododendron simsii HOM05D004831 ORTHO05D003975 2.2e-40 171.0 445 33.3
TPR.G31352 Trifolium pratense HOM05D004831 ORTHO05D003975 8.2e-40 169.1 529 30.8
Cc04_g03580 Coffea canephora HOM05D004831 ORTHO05D003975 1.1e-39 168.7 386 31.3
Oeu021950.1 Olea europaea HOM05D004831 ORTHO05D003975 1.1e-39 168.7 515 30.5
CAN.G438.52 Capsicum annuum HOM05D004831 ORTHO05D003975 4.1e-39 166.8 503 30.4
Solyc03g120340.3 Solanum lycopersicum HOM05D004831 ORTHO05D003975 4.1e-39 166.8 502 30.3
Phvul.005G172500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 9.1e-39 165.6 544 30.3
Sopen03g039230 Solanum pennellii HOM05D004831 ORTHO05D003975 5.9e-38 162.9 502 30.1
vmacro18933 Vaccinium macrocarpon HOM05D004831 ORTHO05D003975 7.7e-38 162.5 414 34.8
Eucgr.F03008 Eucalyptus grandis HOM05D004831 ORTHO05D003975 1.3e-37 161.8 422 31.3
Nitab4.5_0003885g0040 Nicotiana tabacum HOM05D004831 ORTHO05D003975 6.5e-37 159.5 369 33.9
FAN14G0810 Fragaria x ananassa HOM05D004831 ORTHO05D003975 9.4e-36 155.6 521 31.1
Phvul.002G299500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 1.2e-35 155.2 388 34.8
Aa31sc115G30 Aethionema arabicum HOM05D004831 ORTHO05D003975 2.7e-35 154.1 466 31.5
Lj5A62T33 Lonicera japonica HOM05D004831 ORTHO05D003975 2.7e-35 154.1 537 28.1
Psat4g139520 Pisum sativum HOM05D004831 ORTHO05D003975 2.7e-35 154.1 393 32.1
RcHm_v2.0_Chr2g0137511 Rosa chinensis HOM05D004831 ORTHO05D003975 6.1e-35 152.9 421 32.3
Lalb_Chr15g0078831 Lupinus albus HOM05D004831 ORTHO05D003975 8.8e-34 149.1 361 35.5
FAN09G2060 Fragaria x ananassa HOM05D004831 ORTHO05D003975 3.3e-33 147.1 516 29.5
Hund06602 Selenicereus undatus HOM05D004831 ORTHO05D003975 7.5e-33 146.0 406 31.3
Aa31LG7G15290 Aethionema arabicum HOM05D004831 ORTHO05D003975 8.3e-32 142.5 466 31.5
Nitab4.5_0003159g0050 Nicotiana tabacum HOM05D004831 ORTHO05D003975 1.1e-31 142.1 520 28.5
Sc15g0001240 Simmondsia chinensis HOM05D004831 ORTHO05D003975 1.1e-31 142.1 416 28.8
THA.LOC104812471 Tarenaya hassleriana HOM05D004831 ORTHO05D003975 3.1e-31 140.6 541 28.7
arahy.Tifrunner.gnm1.ann1.NQW8T9 Arachis hypogaea HOM05D004831 ORTHO05D003975 5.3e-31 139.8 444 29.7
ClCG05G013830 Citrullus lanatus HOM05D004831 ORTHO05D003975 5.3e-31 139.8 392 34.7
arahy.Tifrunner.gnm1.ann1.3B4S3M Arachis hypogaea HOM05D004831 ORTHO05D003975 9.1e-31 139.0 403 33.5
PSO782G5420 Papaver somniferum HOM05D004831 ORTHO05D003975 1.6e-30 138.3 389 28.0
arahy.Tifrunner.gnm1.ann1.Y8U4CK Arachis hypogaea HOM05D004831 ORTHO05D003975 2.0e-30 137.9 403 33.5
FvH4_6g30920 Fragaria vesca HOM05D004831 ORTHO05D003975 1.3e-29 135.2 512 28.3
PSO063G2677 Papaver somniferum HOM05D004831 ORTHO05D003975 1.7e-29 134.8 412 28.4
arahy.Tifrunner.gnm1.ann1.5CE7DY Arachis hypogaea HOM05D004831 ORTHO05D003975 2.2e-29 134.4 441 29.7
Medtr6g068960 Medicago truncatula HOM05D004831 ORTHO05D003975 8.5e-29 132.5 297 36.0
AT1G15660 Arabidopsis thaliana HOM05D004831 ORTHO05D003975 1.1e-28 132.1 487 30.2
CARHR016160 Cardamine hirsuta HOM05D004831 ORTHO05D003975 1.1e-28 132.1 504 29.8
SGA_v2.0_scaffold37G14809 Striga asiatica HOM05D004831 ORTHO05D003975 1.1e-28 132.1 540 27.8
HanXRQChr05g0163461 Helianthus annuus HOM05D004831 ORTHO05D003975 1.5e-28 131.7 504 27.4
EL10Ac9g21986 Beta vulgaris HOM05D004831 ORTHO05D003975 3.2e-28 130.6 445 28.8
MBI01_g10032_MAGBIO Magnolia biondii HOM05D004831 ORTHO05D003975 7.2e-28 129.4 390 29.5
HanXRQChr02g0032681 Helianthus annuus HOM05D004831 ORTHO05D003975 9.4e-28 129.0 505 27.7
Duzib192G1036 Durio zibethinus HOM05D004831 ORTHO05D003975 2.7e-27 127.5 407 31.0
Lsat_1_v5_gn_1_34820 Lactuca sativa HOM05D004831 ORTHO05D003975 2.7e-27 127.5 433 26.8
BcaC05g25641 Brassica carinata HOM05D004831 ORTHO05D003975 3.6e-27 127.1 419 28.6
A06p11680 Brassica napus HOM05D004831 ORTHO05D003975 1.4e-26 125.2 424 29.0
BraA06t24347Z Brassica rapa HOM05D004831 ORTHO05D003975 1.4e-26 125.2 430 28.8
BolC5t30118H Brassica oleracea HOM05D004831 ORTHO05D003975 5.2e-26 123.2 426 28.9
AL1G27760 Arabidopsis lyrata HOM05D004831 ORTHO05D003975 6.8e-26 122.9 498 27.3
DCAR_026304 Daucus carota HOM05D004831 ORTHO05D003975 2.0e-25 121.3 412 28.6
Haze_24989 Corylus avellana HOM05D004831 ORTHO05D003975 5.7e-25 119.8 200 38.0
Sp1g13970 Schrenkiella parvula HOM05D004831 ORTHO05D003975 7.5e-25 119.4 496 27.2
MD17G1197700 Malus domestica HOM05D004831 ORTHO05D003975 9.8e-25 119.0 426 29.3
FAN02G3038 Fragaria x ananassa HOM05D004831 ORTHO05D003975 1.3e-24 118.6 385 31.2
Thhalv10006918m.g Eutrema salsugineum HOM05D004831 ORTHO05D003975 1.7e-24 118.2 510 27.8
SHI09312 Sapria himalayana HOM05D004831 ORTHO05D003975 3.7e-24 117.1 169 43.8
Haze_16453 Corylus avellana HOM05D004831 ORTHO05D003975 5.4e-23 113.2 153 41.2
AUR62011616 Chenopodium quinoa HOM05D004831 ORTHO05D003975 3.5e-22 110.5 396 26.5
Sed0009949 Sechium edule HOM05D004831 ORTHO05D003975 1.7e-21 108.2 378 33.3
AUR62016432 Chenopodium quinoa HOM05D004831 ORTHO05D003975 2.9e-21 107.5 382 27.5
Ah.01g021180 Amaranthus hybridus HOM05D004831 ORTHO05D003975 3.8e-21 107.1 446 27.1
BcaC05g25510 Brassica carinata HOM05D004831 ORTHO05D003975 5.0e-21 106.7 418 28.2
Carub.0001s1544 Capsella rubella HOM05D004831 ORTHO05D003975 5.0e-21 106.7 501 27.5
C05p13810 Brassica napus HOM05D004831 ORTHO05D012057 2.8e-19 100.9 397 27.7
DCAR_009558 Daucus carota HOM05D004831 ORTHO05D003975 2.8e-19 100.9 471 27.4
unitig_62.g23772 Utricularia gibba HOM05D004831 ORTHO05D003975 2.0e-17 94.7 293 31.1
Lsat_1_v5_gn_9_45780 Lactuca sativa HOM05D004831 ORTHO05D003975 1.7e-16 91.7 455 25.5
ATR0037G028 Amborella trichopoda HOM05D004831 ORTHO05D003975 4.5e-14 83.6 366 25.4
Aqoxy7G01849 Aquilegia oxysepala HOM05D004831 ORTHO05D003975 1.5e-12 78.6 453 23.8
Aa31LG7G300 Aethionema arabicum HOM05D004831 ORTHO05D003975 4.7e-11 73.6 277 29.2
BcaB03g14531 Brassica carinata HOM05D004831 ORTHO05D017393 8.0e-11 72.8 298 26.8
ECA247G1173 Erigeron canadensis HOM05D004831 ORTHO05D003975 1.8e-10 71.6 397 22.7
TAR624G1194 Trochodendron aralioides HOM05D004831 ORTHO05D003975 2.6e-09 67.8 112 32.1
CDE04G1285 Ceratophyllum demersum HOM05D004831 ORTHO05D003975 4.4e-09 67.0 506 22.7
Aa31LG7G290 Aethionema arabicum HOM05D004831 ORTHO05D003975 9.8e-09 65.9 157 29.9


User provided reference genes

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