Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G120750 Manihot esculenta HOM05D000101 ORTHO05D021212 5.9e-129 464.2 226 100.0
GSVIVG01017017001 Vitis vinifera HOM05D000101 ORTHO05D000089 5.0e-19 99.0 160 34.4
Thecc.07G037200 Theobroma cacao HOM05D000101 ORTHO05D000089 6.5e-19 98.6 112 41.1
Ciclev10024832m.g Citrus clementina HOM05D000101 ORTHO05D000089 3.2e-18 96.3 157 35.0
Dinv24081 Davidia involucrata HOM05D000101 ORTHO05D000089 3.2e-18 96.3 160 33.1
Dinv24079 Davidia involucrata HOM05D000101 ORTHO05D000089 5.5e-18 95.5 160 32.5
Duzib235G1014 Durio zibethinus HOM05D000101 ORTHO05D000089 2.1e-17 93.6 156 34.6
Thecc.06G028300 Theobroma cacao HOM05D000101 ORTHO05D000089 2.1e-17 93.6 150 41.3
Thecc.06G026000 Theobroma cacao HOM05D000101 ORTHO05D000089 4.7e-17 92.4 168 34.5
TAR365G0739 Trochodendron aralioides HOM05D000101 ORTHO05D000089 6.1e-17 92.0 172 28.5
Ciclev10027225m.g Citrus clementina HOM05D000101 ORTHO05D000089 8.0e-17 91.7 158 32.9
CSS0001794 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D000089 1.0e-16 91.3 166 30.1
CSS0040253 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D000089 1.0e-16 91.3 166 30.1
Ciclev10027172m.g Citrus clementina HOM05D000101 ORTHO05D000089 3.0e-16 89.7 161 37.3
Ciclev10027577m.g Citrus clementina HOM05D000101 ORTHO05D000089 3.0e-16 89.7 158 36.1
Thecc.06G006000 Theobroma cacao HOM05D000101 ORTHO05D000089 3.0e-16 89.7 153 34.0
TAR365G0346 Trochodendron aralioides HOM05D000101 ORTHO05D000089 3.0e-16 89.7 172 27.9
TAR365G0433 Trochodendron aralioides HOM05D000101 ORTHO05D000089 5.2e-16 89.0 175 30.3
Ciclev10027593m.g Citrus clementina HOM05D000101 ORTHO05D000089 1.5e-15 87.4 161 33.5
Dinv11894 Davidia involucrata HOM05D000101 ORTHO05D000089 1.5e-15 87.4 160 31.9
Ciclev10027214m.g Citrus clementina HOM05D000101 ORTHO05D000089 4.4e-15 85.9 158 33.5
Dinv24082 Davidia involucrata HOM05D000101 ORTHO05D000089 4.4e-15 85.9 160 28.8
Ciclev10027582m.g Citrus clementina HOM05D000101 ORTHO05D000089 5.7e-15 85.5 161 36.6
TAR365G0707 Trochodendron aralioides HOM05D000101 ORTHO05D000089 5.7e-15 85.5 170 27.1
Ciclev10027261m.g Citrus clementina HOM05D000101 ORTHO05D000089 7.5e-15 85.1 161 32.9
Ciclev10027513m.g Citrus clementina HOM05D000101 ORTHO05D000089 7.5e-15 85.1 161 34.8
Ciclev10027511m.g Citrus clementina HOM05D000101 ORTHO05D000089 9.8e-15 84.7 161 35.4
Ciclev10027589m.g Citrus clementina HOM05D000101 ORTHO05D000089 9.8e-15 84.7 162 31.5
Ciclev10024838m.g Citrus clementina HOM05D000101 ORTHO05D000089 1.3e-14 84.3 157 31.8
Ciclev10027254m.g Citrus clementina HOM05D000101 ORTHO05D000089 1.7e-14 84.0 161 34.8
Ciclev10024856m.g Citrus clementina HOM05D000101 ORTHO05D000089 2.2e-14 83.6 157 32.5
Ciclev10024971m.g Citrus clementina HOM05D000101 ORTHO05D000089 2.2e-14 83.6 161 34.8
Ciclev10024842m.g Citrus clementina HOM05D000101 ORTHO05D000089 2.8e-14 83.2 157 31.8
Atru.chr1.3063 Acer truncatum HOM05D000101 ORTHO05D000089 3.7e-14 82.8 158 33.5
Ciclev10024831m.g Citrus clementina HOM05D000101 ORTHO05D000089 3.7e-14 82.8 163 33.7
Ciclev10024847m.g Citrus clementina HOM05D000101 ORTHO05D000089 3.7e-14 82.8 158 31.6
Ciclev10024850m.g Citrus clementina HOM05D000101 ORTHO05D000089 3.7e-14 82.8 158 31.6
Thecc.06G023300 Theobroma cacao HOM05D000101 ORTHO05D000089 4.8e-14 82.4 154 32.5
Atru.chr1.3058 Acer truncatum HOM05D000101 ORTHO05D000089 6.3e-14 82.0 158 32.9
Ciclev10025008m.g Citrus clementina HOM05D000101 ORTHO05D000089 6.3e-14 82.0 161 32.9
Ciclev10027362m.g Citrus clementina HOM05D000101 ORTHO05D000089 6.3e-14 82.0 161 32.9
Atru.chr1.3061 Acer truncatum HOM05D000101 ORTHO05D000089 8.3e-14 81.6 158 33.5
Ciclev10024836m.g Citrus clementina HOM05D000101 ORTHO05D000089 8.3e-14 81.6 161 33.5
Ciclev10026939m.g Citrus clementina HOM05D000101 ORTHO05D000089 8.3e-14 81.6 158 31.6
Ciclev10027517m.g Citrus clementina HOM05D000101 ORTHO05D000089 8.3e-14 81.6 159 35.2
TAR365G0335 Trochodendron aralioides HOM05D000101 ORTHO05D000089 1.4e-13 80.9 196 26.0
GSVIVG01016962001 Vitis vinifera HOM05D000101 ORTHO05D000089 1.8e-13 80.5 167 29.9
Ciclev10024833m.g Citrus clementina HOM05D000101 ORTHO05D000089 3.1e-13 79.7 161 34.2
Manes.04G115600 Manihot esculenta HOM05D000101 ORTHO05D000089 3.1e-13 79.7 160 31.2
Thecc.06G023700 Theobroma cacao HOM05D000101 ORTHO05D000089 3.1e-13 79.7 156 32.1
Thecc.06G028100 Theobroma cacao HOM05D000101 ORTHO05D000089 4.1e-13 79.3 149 32.9
TAR394G0004 Trochodendron aralioides HOM05D000101 ORTHO05D021212 4.1e-13 79.3 143 28.0
TAR636G2872 Trochodendron aralioides HOM05D000101 ORTHO05D000089 4.1e-13 79.3 155 27.1
Thecc.06G005700 Theobroma cacao HOM05D000101 ORTHO05D000089 7.0e-13 78.6 155 31.6
Thecc.06G026800 Theobroma cacao HOM05D000101 ORTHO05D000089 7.0e-13 78.6 161 32.9
TAR376G0496 Trochodendron aralioides HOM05D000101 ORTHO05D000089 7.0e-13 78.6 165 26.7
TAR636G1033 Trochodendron aralioides HOM05D000101 ORTHO05D000089 7.0e-13 78.6 169 30.8
Ciclev10027047m.g Citrus clementina HOM05D000101 ORTHO05D000089 9.1e-13 78.2 158 31.0
Ciclev10024834m.g Citrus clementina HOM05D000101 ORTHO05D000089 1.2e-12 77.8 161 33.5
Ciclev10024868m.g Citrus clementina HOM05D000101 ORTHO05D000089 1.2e-12 77.8 162 30.2
TAR362G1071 Trochodendron aralioides HOM05D000101 ORTHO05D000089 2.0e-12 77.0 210 23.8
Potri.001G313300 Populus trichocarpa HOM05D000101 ORTHO05D000089 2.7e-12 76.6 163 29.4
Ciclev10027169m.g Citrus clementina HOM05D000101 ORTHO05D000089 3.5e-12 76.3 160 30.6
Dinv11884 Davidia involucrata HOM05D000101 ORTHO05D000089 3.5e-12 76.3 143 30.1
TAR636G0957 Trochodendron aralioides HOM05D000101 ORTHO05D000089 3.5e-12 76.3 170 27.6
Ciclev10027118m.g Citrus clementina HOM05D000101 ORTHO05D000089 4.5e-12 75.9 157 28.0
Thecc.09G083300 Theobroma cacao HOM05D000101 ORTHO05D002249 5.9e-12 75.5 168 29.8
Ciclev10024865m.g Citrus clementina HOM05D000101 ORTHO05D000089 7.7e-12 75.1 162 29.0
Ciclev10024882m.g Citrus clementina HOM05D000101 ORTHO05D000089 7.7e-12 75.1 165 27.3
Thecc.06G028000 Theobroma cacao HOM05D000101 ORTHO05D000089 1.0e-11 74.7 150 32.0
TAR362G1067 Trochodendron aralioides HOM05D000101 ORTHO05D000089 1.0e-11 74.7 174 29.3
Ciclev10027347m.g Citrus clementina HOM05D000101 ORTHO05D000089 1.3e-11 74.3 161 26.7
TAR636G2001 Trochodendron aralioides HOM05D000101 ORTHO05D000089 2.2e-11 73.6 166 28.9
Ciclev10026996m.g Citrus clementina HOM05D000101 ORTHO05D000089 3.8e-11 72.8 160 30.0
Thecc.06G071500 Theobroma cacao HOM05D000101 ORTHO05D000089 3.8e-11 72.8 154 30.5
Ciclev10024873m.g Citrus clementina HOM05D000101 ORTHO05D000089 6.5e-11 72.0 181 28.7
Ciclev10024859m.g Citrus clementina HOM05D000101 ORTHO05D000089 1.1e-10 71.2 148 29.7
GSVIVG01020267001 Vitis vinifera HOM05D000101 ORTHO05D000089 1.1e-10 71.2 161 29.2
Ciclev10027198m.g Citrus clementina HOM05D000101 ORTHO05D000089 1.5e-10 70.9 175 29.1
Ciclev10024848m.g Citrus clementina HOM05D000101 ORTHO05D000089 1.9e-10 70.5 161 34.2
Aa31LG1G3700 Aethionema arabicum HOM05D000101 ORTHO05D000089 3.2e-10 69.7 162 30.2
RcHm_v2.0_Chr2g0136891 Rosa chinensis HOM05D000101 ORTHO05D000089 4.2e-10 69.3 151 30.5
Sabra16G0197800 Salix brachista HOM05D000101 ORTHO05D000089 5.5e-10 68.9 154 28.6
BcaB07g33473 Brassica carinata HOM05D000101 ORTHO05D000089 9.4e-10 68.2 158 25.3
GSVIVG01017148001 Vitis vinifera HOM05D000101 ORTHO05D000089 9.4e-10 68.2 152 32.2
Ciclev10013966m.g Citrus clementina HOM05D000101 ORTHO05D000089 1.6e-09 67.4 160 29.4
Ciclev10027596m.g Citrus clementina HOM05D000101 ORTHO05D000089 1.6e-09 67.4 157 28.7
Thecc.06G071900 Theobroma cacao HOM05D000101 ORTHO05D000089 1.6e-09 67.4 154 29.9
GSVIVG01017136001 Vitis vinifera HOM05D000101 ORTHO05D000089 2.1e-09 67.0 152 29.6
Ciclev10027288m.g Citrus clementina HOM05D000101 ORTHO05D000089 2.7e-09 66.6 156 30.8
GSVIVG01025877001 Vitis vinifera HOM05D000101 ORTHO05D000089 4.7e-09 65.9 135 28.9
Dinv41746 Davidia involucrata HOM05D000101 ORTHO05D021212 6.1e-09 65.5 139 32.4
Ciclev10024913m.g Citrus clementina HOM05D000101 ORTHO05D000089 8.0e-09 65.1 114 38.6
Duzib235G0478 Durio zibethinus HOM05D000101 ORTHO05D000089 1.0e-08 64.7 135 29.6
Duzib235G0887 Durio zibethinus HOM05D000101 ORTHO05D000089 1.0e-08 64.7 135 29.6
TAR636G3068 Trochodendron aralioides HOM05D000101 ORTHO05D000089 1.4e-08 64.3 136 28.7
Aa31LG1G2310 Aethionema arabicum HOM05D000101 ORTHO05D000089 1.8e-08 63.9 153 30.1
Eucgr.L01171 Eucalyptus grandis HOM05D000101 ORTHO05D000089 1.8e-08 63.9 165 30.3
CARHR150940 Cardamine hirsuta HOM05D000101 ORTHO05D000089 4.0e-08 62.8 153 27.5
Manes.11G053000 Manihot esculenta HOM05D000101 ORTHO05D000089 4.0e-08 62.8 156 26.3
BraA06t23509Z Brassica rapa HOM05D000101 ORTHO05D000089 5.2e-08 62.4 157 26.8
THA.LOC104813585 Tarenaya hassleriana HOM05D000101 ORTHO05D000089 5.2e-08 62.4 166 25.3
Aa31LG1G2920 Aethionema arabicum HOM05D000101 ORTHO05D000089 6.8e-08 62.0 149 28.9
BraA09t41679Z Brassica rapa HOM05D000101 ORTHO05D000089 6.8e-08 62.0 163 26.4
CARHR116510 Cardamine hirsuta HOM05D000101 ORTHO05D000089 6.8e-08 62.0 173 27.2
AT1G63360 Arabidopsis thaliana HOM05D000101 ORTHO05D000089 1.2e-07 61.2 138 28.3
BcaB02g09946 Brassica carinata HOM05D000101 ORTHO05D000089 1.2e-07 61.2 154 27.9
Aa31LG4G13240 Aethionema arabicum HOM05D000101 ORTHO05D000089 1.5e-07 60.8 155 28.4
BcaB07g31810 Brassica carinata HOM05D000101 ORTHO05D000089 1.5e-07 60.8 155 28.4
Aa31LG1G2360 Aethionema arabicum HOM05D000101 ORTHO05D000089 2.6e-07 60.1 182 26.9
AL7G46430 Arabidopsis lyrata HOM05D000101 ORTHO05D000089 2.6e-07 60.1 152 27.0
Ciclev10025693m.g Citrus clementina HOM05D000101 ORTHO05D000089 2.6e-07 60.1 110 28.2
Atru.chr1.3066 Acer truncatum HOM05D000101 ORTHO05D000089 3.4e-07 59.7 110 32.7
BcaC05g25204 Brassica carinata HOM05D000101 ORTHO05D000089 3.4e-07 59.7 157 27.4
BolC5t29835H Brassica oleracea HOM05D000101 ORTHO05D000089 3.4e-07 59.7 157 27.4
BcaC04g22760 Brassica carinata HOM05D000101 ORTHO05D000089 4.4e-07 59.3 154 27.9
A09p13130 Brassica napus HOM05D000101 ORTHO05D000089 4.4e-07 59.3 154 27.9
BraA09t36959Z Brassica rapa HOM05D000101 ORTHO05D000089 4.4e-07 59.3 154 27.9
C08p46760 Brassica napus HOM05D000101 ORTHO05D000089 5.7e-07 58.9 161 28.6
BolC8t52214H Brassica oleracea HOM05D000101 ORTHO05D000089 7.5e-07 58.5 163 27.0
Aa31LG1G3690 Aethionema arabicum HOM05D000101 ORTHO05D000089 1.3e-06 57.8 160 29.4
AL8G16430 Arabidopsis lyrata HOM05D000101 ORTHO05D000089 1.3e-06 57.8 184 23.4
Duzib168G0797 Durio zibethinus HOM05D000101 ORTHO05D000089 1.3e-06 57.8 135 25.2
Eucgr.F04172 Eucalyptus grandis HOM05D000101 ORTHO05D000089 1.7e-06 57.4 161 29.8
MBI04_g12645_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D000089 1.7e-06 57.4 173 30.1
MBI04_g25417_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D000089 1.7e-06 57.4 177 24.9
Aa31LG1G3570 Aethionema arabicum HOM05D000101 ORTHO05D000089 2.2e-06 57.0 162 27.8
AT1G12220 Arabidopsis thaliana HOM05D000101 ORTHO05D000089 2.2e-06 57.0 153 28.8
AT5G63020 Arabidopsis thaliana HOM05D000101 ORTHO05D000089 2.2e-06 57.0 159 23.3
Eucgr.F04256 Eucalyptus grandis HOM05D000101 ORTHO05D000089 2.2e-06 57.0 158 25.3
C09p15580 Brassica napus HOM05D000101 ORTHO05D000089 2.8e-06 56.6 154 27.3
Aa31LG1G2880 Aethionema arabicum HOM05D000101 ORTHO05D000089 3.7e-06 56.2 155 28.4
AT1G62630 Arabidopsis thaliana HOM05D000101 ORTHO05D000089 3.7e-06 56.2 145 26.2
BcaB07g31264 Brassica carinata HOM05D000101 ORTHO05D000089 3.7e-06 56.2 147 25.2
Eucgr.L02679 Eucalyptus grandis HOM05D000101 ORTHO05D000089 3.7e-06 56.2 162 27.2
Aa31LG1G2390 Aethionema arabicum HOM05D000101 ORTHO05D000089 6.3e-06 55.5 206 25.2
Aa31LG1G3680 Aethionema arabicum HOM05D000101 ORTHO05D000089 6.3e-06 55.5 150 30.0
A06p02250 Brassica napus HOM05D000101 ORTHO05D000089 6.3e-06 55.5 144 22.9
CARHR051470 Cardamine hirsuta HOM05D000101 ORTHO05D000089 6.3e-06 55.5 158 25.9
Eucgr.L01792 Eucalyptus grandis HOM05D000101 ORTHO05D000089 6.3e-06 55.5 160 28.1
Thhalv10023263m.g Eutrema salsugineum HOM05D000101 ORTHO05D000089 6.3e-06 55.5 141 28.4
CARHR179880 Cardamine hirsuta HOM05D000101 ORTHO05D000089 8.3e-06 55.1 178 23.6


User provided reference genes

Program Settings