Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 0.0e+00 1427.2 729 100.0
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 1.3e-310 1069.3 752 76.5
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 2.9e-286 988.4 656 78.7
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 1.9e-285 985.7 722 73.7
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 6.5e-278 960.7 759 68.4
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 1.3e-273 946.4 755 68.5
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 3.8e-270 934.9 754 67.6
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 9.4e-269 930.2 751 67.9
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 1.0e-267 926.8 739 69.3
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 7.4e-266 920.6 750 66.8
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 3.1e-264 915.2 743 67.0
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 2.6e-263 912.1 746 66.2
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 1.0e-262 910.2 738 67.2
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 2.5e-261 905.6 740 65.4
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 2.1e-260 902.5 799 63.5
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 4.7e-260 901.4 741 65.0
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 1.8e-259 899.4 702 69.1
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 1.8e-259 899.4 740 65.8
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 2.6e-258 895.6 739 65.2
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 2.8e-257 892.1 762 65.1
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 3.7e-257 891.7 759 65.5
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 4.5e-255 884.8 739 64.1
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 5.9e-255 884.4 698 66.8
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 1.0e-254 883.6 773 63.6
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 6.5e-254 880.9 773 63.5
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 7.2e-253 877.5 709 67.0
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 4.7e-252 874.8 742 65.5
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 1.0e-246 857.1 746 64.2
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 8.6e-246 854.0 743 62.3
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 1.5e-242 843.2 768 62.6
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 7.8e-239 830.9 740 62.3
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 2.3e-238 829.3 740 61.2
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 8.6e-238 827.4 790 59.9
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 1.2e-236 823.5 790 59.7
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 3.6e-236 822.0 743 60.3
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 4.7e-236 821.6 814 58.6
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 8.0e-236 820.8 761 60.6
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 1.2e-234 817.0 735 61.0
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 9.8e-234 813.9 735 63.0
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 2.4e-232 809.3 746 61.9
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 9.2e-232 807.4 755 61.6
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 1.1e-229 800.4 753 61.9
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 1.6e-228 796.6 820 55.9
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 6.2e-228 794.7 741 61.3
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 2.3e-227 792.7 754 60.9
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 5.2e-227 791.6 860 54.4
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 1.2e-226 790.4 749 59.9
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 9.8e-226 787.3 860 54.2
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 8.3e-225 784.3 815 57.4
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 1.1e-224 783.9 737 60.5
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 4.1e-224 781.9 745 58.3
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 3.0e-222 775.8 696 62.8
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 5.6e-221 771.5 812 55.7
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 5.6e-221 771.5 739 59.9
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 1.4e-219 766.9 833 54.5
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 1.8e-219 766.5 766 57.7
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 2.3e-219 766.1 754 59.3
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 4.0e-219 765.4 824 54.2
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 5.2e-219 765.0 825 54.2
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 6.8e-219 764.6 826 54.1
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 1.2e-218 763.8 831 55.4
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 3.4e-218 762.3 782 57.0
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 3.7e-217 758.8 826 53.5
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 6.4e-217 758.1 784 56.6
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 3.5e-215 752.3 817 55.7
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 1.0e-214 750.7 785 56.1
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 3.3e-213 745.7 772 56.3
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 3.3e-213 745.7 748 56.8
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 1.2e-212 743.8 765 57.5
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 2.8e-212 742.7 783 54.8
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 4.7e-212 741.9 744 57.0
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 1.2e-210 737.3 665 61.8
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 1.5e-210 736.9 736 56.4
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 3.4e-210 735.7 746 55.5
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 9.9e-210 734.2 819 53.4
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 2.2e-209 733.0 744 55.2
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 6.4e-209 731.5 753 55.6
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 8.4e-209 731.1 828 52.3
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 8.4e-209 731.1 727 58.3
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 1.4e-208 730.3 750 54.7
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 5.4e-208 728.4 590 66.3
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 9.3e-208 727.6 752 54.1
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 1.6e-207 726.9 737 55.5
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 1.6e-207 726.9 741 55.3
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 1.3e-206 723.8 740 54.6
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 6.6e-206 721.5 740 54.6
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 8.7e-206 721.1 712 58.7
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 4.3e-205 718.8 797 53.5
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 9.6e-205 717.6 741 54.7
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 1.6e-204 716.8 741 54.3
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 3.6e-204 715.7 740 56.4
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 3.6e-204 715.7 744 55.2
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 4.8e-204 715.3 742 55.0
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 2.4e-203 713.0 643 59.4
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 1.7e-201 706.8 743 54.9
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 4.9e-201 705.3 806 52.5
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 1.6e-199 700.3 740 54.6
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 3.0e-198 696.0 618 60.8
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 3.3e-197 692.6 739 55.5
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 1.6e-196 690.3 711 58.6
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 1.1e-195 687.6 813 50.9
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 1.1e-195 687.6 820 50.2
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 9.0e-195 684.5 744 54.3
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 1.2e-194 684.1 743 52.9
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 1.1e-192 677.6 738 52.6
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 7.1e-192 674.9 843 48.9
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 1.7e-185 653.7 715 55.2
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 1.7e-185 653.7 788 50.6
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 1.6e-180 637.1 644 56.5
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 6.2e-180 635.2 711 55.8
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 7.2e-176 621.7 636 53.8
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 2.6e-170 603.2 834 45.8
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 3.2e-168 596.3 441 66.9
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 1.1e-163 581.3 731 48.0
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 1.4e-160 570.9 564 54.8
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 1.0e-158 564.7 616 51.9
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 8.0e-151 538.5 753 45.8
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 3.0e-150 536.6 443 61.6
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 7.7e-138 495.4 435 60.5
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 2.2e-137 493.8 775 42.2
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 1.5e-120 438.0 788 38.6
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 4.0e-110 403.3 461 49.0
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 2.9e-108 397.1 774 37.6
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 2.5e-96 357.5 480 44.2
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.2e-91 340.5 478 41.8
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 7.8e-90 335.9 300 58.7
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.0e-89 334.0 478 40.8
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 9.6e-88 328.9 488 42.0
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.6e-87 327.0 480 40.6
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 9.3e-83 312.4 482 38.4
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 9.3e-83 312.4 482 38.4
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.7e-82 310.8 438 40.4
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 5.1e-81 306.6 611 41.6
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 4.3e-80 303.5 475 39.2
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 5.6e-80 303.1 463 40.2
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 1.2e-77 295.4 517 42.9
Lj8C335T16 Lonicera japonica HOM05D004705 ORTHO05D005595 5.3e-70 270.0 407 44.0
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 9.0e-54 216.1 197 52.3
Actinidia16006 Actinidia chinensis HOM05D004705 ORTHO05D005595 6.3e-47 193.4 402 40.3
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 4.5e-45 187.2 202 55.0
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 1.0e-25 122.9 93 59.1
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 4.5e-21 107.5 71 76.1
Nitab4.5_0000410g0350 Nicotiana tabacum HOM05D004705 ORTHO05D005595 2.5e-19 101.7 427 31.1
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 8.8e-17 93.2 207 33.3
GSVIVG01017207001 Vitis vinifera HOM05D029100 ORTHO05D016439 4.1e-14 84.3 76 55.3
Ah.06g184670 Amaranthus hybridus HOM05D004705 ORTHO05D005595 4.7e-10 70.9 45 73.3
FAN21G1601 Fragaria x ananassa HOM05D000031 ORTHO05D000030 6.1e-10 70.5 85 44.7
Cpa.g.c42332 Carica papaya HOM05D004705 ORTHO05D005595 1.8e-09 68.9 54 55.6
Medtr1g041460 Medicago truncatula HOM05D004705 ORTHO05D005595 1.8e-09 68.9 49 71.4
Ah.02g118940 Amaranthus hybridus HOM05D003112 ORTHO05D005595 2.6e-08 65.1 65 55.4
FAN08G3635 Fragaria x ananassa HOM05D004705 ORTHO05D000113 2.6e-08 65.1 55 50.9
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 2.6e-08 65.1 55 50.9
FAN07G2703 Fragaria x ananassa HOM05D004705 ORTHO05D005595 6.4e-07 60.5 82 41.5


User provided reference genes

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