Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G102400 Manihot esculenta HOM05D007307 ORTHO05D009190 9.4e-267 922.9 459 100.0
QL05p036096 Quercus lobata HOM05D007307 ORTHO05D009190 7.8e-221 770.4 468 81.4
Cpa.g.sc10.77 Carica papaya HOM05D007307 ORTHO05D009190 1.7e-220 769.2 465 82.2
Potri.001G044300 Populus trichocarpa HOM05D007307 ORTHO05D009190 1.1e-219 766.5 469 81.9
Thecc.06G041700 Theobroma cacao HOM05D007307 ORTHO05D009190 1.9e-219 765.8 463 81.6
Duzib192G1050 Durio zibethinus HOM05D007307 ORTHO05D009190 7.3e-219 763.8 464 82.5
CiPaw.02G162300 Carya illinoinensis HOM05D007307 ORTHO05D009190 2.8e-218 761.9 465 81.1
Ciclev10025544m.g Citrus clementina HOM05D007307 ORTHO05D009190 1.3e-215 753.1 468 79.9
Nn2g12391 Nelumbo nucifera HOM05D007307 ORTHO05D009190 4.6e-213 744.6 464 79.5
Prupe.3G098200 Prunus persica HOM05D007307 ORTHO05D009190 5.1e-212 741.1 466 78.5
GSVIVG01015957001 Vitis vinifera HOM05D007307 ORTHO05D009190 1.9e-211 739.2 468 79.1
Haze_16668 Corylus avellana HOM05D007307 ORTHO05D009190 3.3e-211 738.4 476 77.7
THA.LOC104813590 Tarenaya hassleriana HOM05D007307 ORTHO05D009190 9.6e-211 736.9 462 81.0
Gorai.009G123800 Gossypium raimondii HOM05D007307 ORTHO05D009190 2.1e-210 735.7 465 79.6
RcHm_v2.0_Chr2g0132981 Rosa chinensis HOM05D007307 ORTHO05D009190 4.8e-210 734.6 465 76.6
Sabra01G0030600 Salix brachista HOM05D007307 ORTHO05D009190 6.2e-210 734.2 511 73.2
Gohir.D05G120300 Gossypium hirsutum HOM05D007307 ORTHO05D009190 8.1e-210 733.8 465 79.6
Atru.chr10.2412 Acer truncatum HOM05D007307 ORTHO05D009190 1.4e-209 733.0 467 78.2
FvH4_6g28640 Fragaria vesca HOM05D007307 ORTHO05D009190 1.8e-209 732.6 465 75.7
Cc04_g05100 Coffea canephora HOM05D007307 ORTHO05D009190 2.4e-209 732.3 464 77.2
Eucgr.F03957 Eucalyptus grandis HOM05D007307 ORTHO05D009190 2.4e-209 732.3 471 76.2
FAN14G3907 Fragaria x ananassa HOM05D007307 ORTHO05D009190 9.0e-209 730.3 465 75.5
MD17G1223300 Malus domestica HOM05D007307 ORTHO05D009190 2.0e-208 729.2 462 76.4
MSTRG.11181 Avicennia marina HOM05D007307 ORTHO05D009190 2.6e-208 728.8 467 77.7
CSS0015248 Camellia sinensis var. sinensis HOM05D007307 ORTHO05D009190 5.8e-208 727.6 448 80.1
FAN05G4298 Fragaria x ananassa HOM05D007307 ORTHO05D009190 9.9e-208 726.9 465 75.1
Glyma.08G218800 Glycine max HOM05D007307 ORTHO05D009190 9.9e-208 726.9 473 77.6
FAN09G0915 Fragaria x ananassa HOM05D007307 ORTHO05D009190 1.7e-207 726.1 465 75.1
Glyma.07G023000 Glycine max HOM05D007307 ORTHO05D009190 1.4e-206 723.0 469 77.8
AUR62026998 Chenopodium quinoa HOM05D007307 ORTHO05D009190 2.1e-205 719.2 460 77.0
TAR625G0746 Trochodendron aralioides HOM05D007307 ORTHO05D009190 3.5e-205 718.4 465 77.2
TWI18G0485 Tripterygium wilfordii HOM05D007307 ORTHO05D009190 6.0e-205 717.6 461 77.4
Aa31LG7G560 Aethionema arabicum HOM05D007307 ORTHO05D009190 7.9e-205 717.2 460 78.3
ClCG09G003340 Citrullus lanatus HOM05D007307 ORTHO05D009190 7.9e-205 717.2 469 76.5
AUR62030838 Chenopodium quinoa HOM05D007307 ORTHO05D009190 1.9e-203 712.6 460 76.1
Actinidia25480 Actinidia chinensis HOM05D007307 ORTHO05D009190 2.5e-203 712.2 462 77.9
Ca_20542_v3 Cicer arietinum L. HOM05D007307 ORTHO05D009190 1.3e-202 709.9 422 79.6
EL10Ac3g06300 Beta vulgaris HOM05D007307 ORTHO05D009190 2.8e-202 708.8 453 75.9
Lj5A80T58 Lonicera japonica HOM05D007307 ORTHO05D009190 2.8e-202 708.8 464 74.8
Nitab4.5_0002568g0020 Nicotiana tabacum HOM05D007307 ORTHO05D009190 3.1e-201 705.3 465 74.2
CDE04G0143 Ceratophyllum demersum HOM05D007307 ORTHO05D009190 4.0e-201 704.9 468 74.4
Medtr4g007080 Medicago truncatula HOM05D007307 ORTHO05D009190 5.3e-201 704.5 464 75.0
Sed0012177 Sechium edule HOM05D007307 ORTHO05D009190 9.0e-201 703.7 467 75.4
Nitab4.5_0012161g0020 Nicotiana tabacum HOM05D007307 ORTHO05D009190 1.5e-200 703.0 465 74.0
Psat7g260240 Pisum sativum HOM05D007307 ORTHO05D009190 2.0e-200 702.6 470 73.8
Sopen03g035800 Solanum pennellii HOM05D007307 ORTHO05D009190 2.6e-200 702.2 461 74.0
Solyc03g116870.3 Solanum lycopersicum HOM05D007307 ORTHO05D009190 4.5e-200 701.4 461 74.0
Thhalv10007586m.g Eutrema salsugineum HOM05D007307 ORTHO05D009190 1.3e-199 699.9 460 76.7
Sp1g14290 Schrenkiella parvula HOM05D007307 ORTHO05D009190 1.3e-199 699.9 461 76.8
Phvul.010G161300 Phaseolus vulgaris HOM05D007307 ORTHO05D009190 1.7e-199 699.5 457 76.4
TPR.G23084 Trifolium pratense HOM05D007307 ORTHO05D009190 2.2e-199 699.1 462 74.2
MELO3C023468.2 Cucumis melo HOM05D007307 ORTHO05D009190 3.8e-199 698.4 464 74.8
Peaxi162Scf00332g00525 Petunia axillaris HOM05D007307 ORTHO05D009190 3.8e-199 698.4 459 74.3
PGSC0003DMG400019823 Solanum tuberosum HOM05D007307 ORTHO05D009190 8.4e-199 697.2 469 72.9
CARHR016480 Cardamine hirsuta HOM05D007307 ORTHO05D009190 1.9e-198 696.0 461 76.6
CsaV3_7G031890 Cucumis sativus L. HOM05D007307 ORTHO05D009190 2.5e-198 695.7 464 74.4
Migut.I00693 Erythranthe guttata HOM05D007307 ORTHO05D009190 3.2e-198 695.3 465 72.9
SalBow7G3293 Salvia bowleyana HOM05D007307 ORTHO05D009190 5.5e-198 694.5 458 74.5
VMungo0331G1235 Vigna mungo HOM05D007307 ORTHO05D009190 9.3e-198 693.7 457 75.7
CAN.G407.66 Capsicum annuum HOM05D007307 ORTHO05D009190 4.6e-197 691.4 464 73.3
Carub.0001s1578 Capsella rubella HOM05D007307 ORTHO05D009190 1.0e-196 690.3 465 75.3
Lj3g0010338 Lotus japonicus HOM05D007307 ORTHO05D009190 1.0e-196 690.3 456 74.6
AT1G15980 Arabidopsis thaliana HOM05D007307 ORTHO05D009190 2.3e-196 689.1 461 75.9
BcaB02g06649 Brassica carinata HOM05D007307 ORTHO05D009190 3.0e-196 688.7 462 74.7
AL1G28140 Arabidopsis lyrata HOM05D007307 ORTHO05D009190 1.1e-195 686.8 462 75.5
CANSAT56G3714 Cannabis sativa HOM05D007307 ORTHO05D009190 3.3e-195 685.3 483 70.4
A06p12000 Brassica napus HOM05D007307 ORTHO05D009190 9.6e-195 683.7 460 74.3
BraA06t24371Z Brassica rapa HOM05D007307 ORTHO05D009190 9.6e-195 683.7 460 74.3
Lalb_Chr25g0278871 Lupinus albus HOM05D007307 ORTHO05D009190 2.1e-194 682.6 452 74.8
BcaC05g25617 Brassica carinata HOM05D007307 ORTHO05D009190 3.7e-194 681.8 462 74.0
Rhsim08G0205700 Rhododendron simsii HOM05D007307 ORTHO05D009190 2.4e-193 679.1 484 72.1
C05p14190 Brassica napus HOM05D007307 ORTHO05D009190 3.1e-193 678.7 462 73.8
Lsat_1_v5_gn_5_8240 Lactuca sativa HOM05D007307 ORTHO05D009190 9.0e-193 677.2 466 71.2
unitig_52.g17476 Utricularia gibba HOM05D007307 ORTHO05D009190 9.0e-193 677.2 457 73.5
Aqoxy7G01916 Aquilegia oxysepala HOM05D007307 ORTHO05D009190 2.0e-192 676.0 462 72.9
ECA246G2038 Erigeron canadensis HOM05D007307 ORTHO05D009190 2.6e-192 675.6 466 70.4
Hma1.2p1_0109F.1_g052560 Hydrangea macrophylla HOM05D007307 ORTHO05D009190 3.4e-192 675.2 460 73.9
PSO170G4955 Papaver somniferum HOM05D007307 ORTHO05D009190 1.3e-191 673.3 468 71.2
HanXRQChr08g0235871 Helianthus annuus HOM05D007307 ORTHO05D009190 8.5e-191 670.6 468 70.1
ATR0739G128 Amborella trichopoda HOM05D007307 ORTHO05D009190 1.4e-190 669.8 460 72.4
PSO017G5597 Papaver somniferum HOM05D007307 ORTHO05D009190 5.5e-190 667.9 468 70.5
Oeu051583.2 Olea europaea HOM05D007307 ORTHO05D009190 1.3e-188 663.3 396 81.6
arahy.Tifrunner.gnm1.ann1.X6E8D2 Arachis hypogaea HOM05D007307 ORTHO05D009190 2.2e-186 656.0 468 70.9
Dinv23284 Davidia involucrata HOM05D007307 ORTHO05D009190 2.6e-184 649.0 382 81.4
FAN02G3759 Fragaria x ananassa HOM05D007307 ORTHO05D009190 2.6e-184 649.0 407 75.7
Gohir.A05G119300 Gossypium hirsutum HOM05D007307 ORTHO05D009190 3.9e-172 608.6 386 78.0
DCAR_017649 Daucus carota HOM05D007307 ORTHO05D009190 6.7e-172 607.8 411 71.8
Os08g0276100 Oryza sativa ssp. japonica HOM05D007307 ORTHO05D009190 4.0e-164 582.0 409 67.0
Zm00001eb176730 Zea mays HOM05D007307 ORTHO05D009190 8.8e-164 580.9 420 64.8
Zm00001eb412420 Zea mays HOM05D007307 ORTHO05D009190 4.5e-160 568.5 420 64.3
arahy.Tifrunner.gnm1.ann1.DFM3I4 Arachis hypogaea HOM05D007307 ORTHO05D009190 4.4e-155 552.0 468 63.7
COL.COLO4_26702 Corchorus olitorius HOM05D007307 ORTHO05D009190 2.1e-149 533.1 324 81.5
BolC5t30150H Brassica oleracea HOM05D007307 ORTHO05D009190 1.0e-143 514.2 342 73.1
Ah.01g006960 Amaranthus hybridus HOM05D007307 ORTHO05D009190 3.2e-137 492.7 454 58.6
SMO364G0491 Selaginella moellendorffii HOM05D007307 ORTHO05D009190 4.1e-121 439.1 401 54.4
Pp3c9_19250 Physcomitrium patens HOM05D007307 ORTHO05D009190 4.7e-117 425.6 457 48.6
AagrBONN_evm.TU.Sc2ySwM_344.2748 Anthoceros agrestis HOM05D007307 ORTHO05D009190 6.2e-117 425.2 402 54.0
Pp3c15_23280 Physcomitrium patens HOM05D007307 ORTHO05D009190 5.2e-116 422.2 420 51.4
Mapoly0114s0017 Marchantia polymorpha HOM05D007307 ORTHO05D009190 1.2e-109 401.0 397 50.9
CBR_g34729 Chara braunii HOM05D007307 ORTHO05D009190 3.5e-96 356.3 401 44.6
Hma1.2p1_0109F.1_g052570 Hydrangea macrophylla HOM05D007307 ORTHO05D009190 2.0e-83 313.9 199 75.9
Hund06518 Selenicereus undatus HOM05D007307 ORTHO05D009190 3.7e-69 266.5 187 71.1
SEGI_02712 Sequoiadendron giganteum HOM05D007307 ORTHO05D009190 3.7e-69 266.5 206 64.1
SEGI_37660 Sequoiadendron giganteum HOM05D007307 ORTHO05D009190 3.7e-69 266.5 206 64.1
SEGI_25940 Sequoiadendron giganteum HOM05D007307 ORTHO05D009190 1.8e-55 221.1 193 57.0
Actinidia18248 Actinidia chinensis HOM05D007307 ORTHO05D009190 2.3e-26 124.4 88 72.7
Lj5A80T54 Lonicera japonica HOM05D007307 ORTHO05D009190 5.4e-20 103.2 61 80.3


User provided reference genes

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