Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 4.0e-72 274.6 136 100.0
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 8.3e-70 266.9 136 97.8
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 3.5e-68 261.5 136 95.6
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 1.0e-67 260.0 136 94.9
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 1.0e-67 260.0 136 94.9
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 1.3e-67 259.6 136 94.1
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 2.3e-67 258.8 136 94.1
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 3.0e-67 258.5 136 94.1
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 5.1e-67 257.7 136 93.4
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 6.6e-67 257.3 136 92.6
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 1.1e-66 256.5 136 92.6
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 1.1e-66 256.5 136 92.6
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 1.9e-66 255.8 136 91.2
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 5.6e-66 254.2 136 91.9
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 1.2e-65 253.1 136 91.9
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 1.6e-65 252.7 136 90.4
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 1.6e-65 252.7 136 90.4
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 2.1e-65 252.3 136 90.4
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 2.1e-65 252.3 136 90.4
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 2.1e-65 252.3 136 90.4
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 2.1e-65 252.3 136 91.9
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 2.8e-65 251.9 136 90.4
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 2.8e-65 251.9 136 91.2
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 4.7e-65 251.1 136 89.7
Glyma.04G207300 Glycine max HOM05D004554 ORTHO05D005360 6.2e-65 250.8 136 90.4
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 8.1e-65 250.4 136 89.7
Psat5g058840 Pisum sativum HOM05D004554 ORTHO05D005360 8.1e-65 250.4 136 89.7
TPR.G7873 Trifolium pratense HOM05D004554 ORTHO05D005360 8.1e-65 250.4 136 89.7
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 1.1e-64 250.0 136 89.0
Phvul.009G152000 Phaseolus vulgaris HOM05D004554 ORTHO05D005360 1.4e-64 249.6 136 89.7
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 2.4e-64 248.8 136 91.2
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 2.4e-64 248.8 136 89.0
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 2.4e-64 248.8 136 89.0
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 3.1e-64 248.4 136 89.0
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 3.1e-64 248.4 137 91.2
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 3.1e-64 248.4 136 89.7
Dinv30578 Davidia involucrata HOM05D004554 ORTHO05D005360 4.0e-64 248.1 136 89.7
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 8.9e-64 246.9 136 88.2
PGSC0003DMG402028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 8.9e-64 246.9 136 89.0
Actinidia08808 Actinidia chinensis HOM05D004554 ORTHO05D005360 1.5e-63 246.1 136 88.2
Sp2g09550 Schrenkiella parvula HOM05D004554 ORTHO05D005360 1.5e-63 246.1 136 88.2
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 4.4e-63 244.6 137 89.8
ECA232G3015 Erigeron canadensis HOM05D004554 ORTHO05D005360 7.6e-63 243.8 136 86.0
MSTRG.4713 Avicennia marina HOM05D004554 ORTHO05D005360 1.7e-62 242.7 136 86.8
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 2.2e-62 242.3 136 87.5
Oeu052276.1 Olea europaea HOM05D004554 ORTHO05D005360 2.2e-62 242.3 136 88.2
Migut.D01058 Erythranthe guttata HOM05D004554 ORTHO05D005360 2.9e-62 241.9 136 86.0
CSS0043216 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 4.9e-62 241.1 136 86.0
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 4.9e-62 241.1 138 87.7
PSO170G6065 Papaver somniferum HOM05D004554 ORTHO05D005360 4.9e-62 241.1 136 83.8
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 1.4e-61 239.6 138 87.0
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 1.4e-61 239.6 138 87.0
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 4.1e-61 238.0 149 80.5
PSO541G2287 Papaver somniferum HOM05D004554 ORTHO05D005360 4.1e-61 238.0 136 86.0
PSO675G8776 Papaver somniferum HOM05D004554 ORTHO05D005360 4.1e-61 238.0 136 86.0
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 4.1e-61 238.0 136 83.1
CSS0017610 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 9.2e-61 236.9 159 78.0
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 9.2e-61 236.9 136 85.3
Gohir.D09G206200 Gossypium hirsutum HOM05D004554 ORTHO05D005360 9.2e-61 236.9 136 88.2
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 1.2e-60 236.5 136 83.1
Gorai.006G230100 Gossypium raimondii HOM05D004554 ORTHO05D005360 3.5e-60 235.0 136 87.5
Lsat_1_v5_gn_4_105840 Lactuca sativa HOM05D004554 ORTHO05D005360 1.3e-59 233.0 137 82.5
Zm00001eb331160 Zea mays HOM05D004554 ORTHO05D005360 3.0e-59 231.9 137 83.2
SEGI_00661 Sequoiadendron giganteum HOM05D004554 ORTHO05D005360 2.5e-58 228.8 136 80.1
vmacro21051 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 7.3e-58 227.3 153 75.8
CSS0029734 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 1.2e-57 226.5 148 77.0
HanXRQChr16g0500531 Helianthus annuus HOM05D004554 ORTHO05D005360 2.8e-57 225.3 172 68.0
Medtr1g102650 Medicago truncatula HOM05D004554 ORTHO05D005360 2.8e-57 225.3 169 71.0
VMungo1309G1053 Vigna mungo HOM05D004554 ORTHO05D005360 4.7e-57 224.6 136 83.8
FAN10G0691 Fragaria x ananassa HOM05D004554 ORTHO05D005360 8.1e-57 223.8 189 65.6
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 1.4e-56 223.0 136 75.7
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 1.8e-56 222.6 136 76.5
AagrBONN_evm.TU.Sc2ySwM_362.569 Anthoceros agrestis HOM05D004554 ORTHO05D005360 4.0e-56 221.5 136 75.0
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 6.9e-56 220.7 139 79.1
Gohir.A09G212650 Gossypium hirsutum HOM05D004554 ORTHO05D005360 3.2e-53 211.8 120 90.0
TWI75G0475 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 2.8e-49 198.7 106 90.6
Hma1.2p1_1324F.1_g275710 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 6.2e-49 197.6 124 81.5
Peaxi162Scf00207g00743 Petunia axillaris HOM05D004554 ORTHO05D005360 8.1e-49 197.2 136 74.3
Aa31sc43G10 Aethionema arabicum HOM05D004554 ORTHO05D005360 3.1e-48 195.3 137 75.9
Thhalv10019800m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 7.6e-47 190.7 169 63.9
Os04g0503800 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 1.3e-46 189.9 110 80.9
Sc10g0005760 Simmondsia chinensis HOM05D004554 ORTHO05D005360 2.2e-46 189.1 105 86.7
Sabra01G0029900 Salix brachista HOM05D004554 ORTHO05D005360 3.8e-46 188.3 136 74.3
Sc25g0002650 Simmondsia chinensis HOM05D004554 ORTHO05D005360 1.4e-45 186.4 105 85.7
vmacro16909 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 1.4e-45 186.4 136 74.3
FAN01G0304 Fragaria x ananassa HOM05D004554 ORTHO05D007400 2.1e-44 182.6 138 71.7
BcaB07g30930 Brassica carinata HOM05D004554 ORTHO05D005360 2.5e-42 175.6 136 69.1
Lj1g0023737 Lotus japonicus HOM05D004554 ORTHO05D005360 2.5e-42 175.6 141 67.4
SGA_v2.0_scaffold16G07612 Striga asiatica HOM05D004554 ORTHO05D005360 4.3e-42 174.9 107 80.4
unitig_899.g14783 Utricularia gibba HOM05D004554 ORTHO05D005360 2.6e-39 165.6 136 65.4
SGA_v2.0_scaffold117G32370 Striga asiatica HOM05D004554 ORTHO05D005360 1.4e-37 159.8 136 64.0
COL.COLO4_28385 Corchorus olitorius HOM05D004554 ORTHO05D005360 1.8e-35 152.9 88 88.6
QL10p039943 Quercus lobata HOM05D004554 ORTHO05D005360 3.9e-35 151.8 77 97.4
QL06p045297 Quercus lobata HOM05D004554 ORTHO05D005360 6.7e-35 151.0 77 97.4
Atru.chr2.1839 Acer truncatum HOM05D004554 ORTHO05D005360 1.1e-34 150.2 81 92.6
BcaC04g21821 Brassica carinata HOM05D004554 ORTHO05D005360 1.5e-34 149.8 82 87.8
BolC9t55589H Brassica oleracea HOM05D004554 ORTHO05D005360 1.5e-34 149.8 82 87.8
MD08G1243100 Malus domestica HOM05D004554 ORTHO05D005360 1.9e-34 149.4 77 96.1
MD15G1436700 Malus domestica HOM05D004554 ORTHO05D005360 1.9e-34 149.4 77 96.1
Thhalv10001067m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 4.3e-34 148.3 80 87.5
FvH4_7g07440 Fragaria vesca HOM05D004554 ORTHO05D005360 5.6e-34 147.9 77 93.5
FAN06G4122 Fragaria x ananassa HOM05D004554 ORTHO05D005360 5.6e-34 147.9 77 93.5
arahy.Tifrunner.gnm1.ann1.HM0BYB Arachis hypogaea HOM05D004554 ORTHO05D005360 7.4e-34 147.5 77 93.5
arahy.Tifrunner.gnm1.ann1.NV3HYF Arachis hypogaea HOM05D004554 ORTHO05D005360 7.4e-34 147.5 77 93.5
arahy.Tifrunner.gnm1.ann1.YS1HQ5 Arachis hypogaea HOM05D004554 ORTHO05D005360 7.4e-34 147.5 77 93.5
arahy.Tifrunner.gnm1.ann1.Z4TQX9 Arachis hypogaea HOM05D004554 ORTHO05D005360 1.6e-33 146.4 77 92.2
A07p45180 Brassica napus HOM05D004554 ORTHO05D005360 1.6e-33 146.4 80 88.8
C06p54030 Brassica napus HOM05D004554 ORTHO05D005360 1.6e-33 146.4 80 88.8
BolC6t40416H Brassica oleracea HOM05D004554 ORTHO05D005360 1.6e-33 146.4 80 88.8
BraA07t32021Z Brassica rapa HOM05D004554 ORTHO05D005360 1.6e-33 146.4 80 88.8
ClCG02G000050 Citrullus lanatus HOM05D004554 ORTHO05D005360 1.6e-33 146.4 77 92.2
CsaV3_2G019710 Cucumis sativus L. HOM05D004554 ORTHO05D005360 1.6e-33 146.4 77 92.2
GSVIVG01017278001 Vitis vinifera HOM05D004554 ORTHO05D005360 2.1e-33 146.0 82 86.6
Lalb_Chr08g0237951 Lupinus albus HOM05D004554 ORTHO05D005360 2.8e-33 145.6 77 90.9
MCO03G231 Micromonas commoda HOM05D004554 ORTHO05D005360 3.7e-33 145.2 142 45.8
FAN03G1590 Fragaria x ananassa HOM05D004554 ORTHO05D005360 8.2e-33 144.1 77 90.9
Sopen06g025310 Solanum pennellii HOM05D004554 ORTHO05D005360 1.1e-32 143.7 82 85.4
Carub.0002s0990 Capsella rubella HOM05D004554 ORTHO05D005360 1.8e-32 142.9 80 85.0
Rhsim08G0215600 Rhododendron simsii HOM05D004554 ORTHO05D005360 2.4e-32 142.5 85 84.7
PGSC0003DMG401028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 5.3e-32 141.4 82 85.4
SMO244G0023 Selaginella moellendorffii HOM05D004554 ORTHO05D005360 6.9e-32 141.0 158 48.7
CAN.G395.49 Capsicum annuum HOM05D004554 ORTHO05D005360 1.2e-31 140.2 77 88.3
Oeu053426.1 Olea europaea HOM05D004554 ORTHO05D005360 4.5e-31 138.3 85 78.8
HanXRQChr09g0274941 Helianthus annuus HOM05D004554 ORTHO05D005360 5.8e-31 137.9 77 84.4
SalBow2G1085 Salvia bowleyana HOM05D004554 ORTHO05D005360 5.8e-31 137.9 77 87.0
SalBow3G2596 Salvia bowleyana HOM05D004554 ORTHO05D005360 5.8e-31 137.9 77 85.7
PRCOL_00001690 Prasinoderma coloniale HOM05D004554 ORTHO05D005360 7.6e-31 137.5 128 49.2
Rhsim12G0192700 Rhododendron simsii HOM05D004554 ORTHO05D005360 7.6e-31 137.5 77 87.0
Cc02_g38630 Coffea canephora HOM05D004554 ORTHO05D005360 1.0e-30 137.1 77 85.7
Hund06576 Selenicereus undatus HOM05D004554 ORTHO05D005360 1.0e-30 137.1 77 87.0
Ah.11g047570 Amaranthus hybridus HOM05D004554 ORTHO05D005360 1.3e-30 136.7 77 87.0
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 1.7e-30 136.3 136 48.5
ATR0138G017 Amborella trichopoda HOM05D004554 ORTHO05D005360 2.9e-30 135.6 76 86.8
EL10Ac6g14261 Beta vulgaris HOM05D004554 ORTHO05D005360 8.4e-30 134.0 75 88.0
Lj9P502T35 Lonicera japonica HOM05D004554 ORTHO05D005360 6.0e-28 127.9 87 72.4
DCAR_025490 Daucus carota HOM05D004554 ORTHO05D005360 7.9e-28 127.5 74 81.1
Lsat_1_v5_gn_5_132260 Lactuca sativa HOM05D004554 ORTHO05D005360 1.3e-27 126.7 126 56.3
Lj5A69T38 Lonicera japonica HOM05D004554 ORTHO05D005360 4.1e-24 115.2 116 56.9
Eucgr.L03064 Eucalyptus grandis HOM05D004554 ORTHO05D005360 9.0e-24 114.0 60 88.3
Rhsim12G0192800 Rhododendron simsii HOM05D004554 ORTHO05D005360 9.0e-24 114.0 60 88.3
Ca_17005_v3 Cicer arietinum L. HOM05D004554 ORTHO05D005360 1.0e-22 110.5 57 94.7
Medtr3g097015 Medicago truncatula HOM05D004554 ORTHO05D005360 1.7e-22 109.8 56 96.4
Sed0002995 Sechium edule HOM05D004554 ORTHO05D005360 2.2e-22 109.4 110 55.5
Atru.chr2.1838 Acer truncatum HOM05D004554 ORTHO05D005360 3.2e-21 105.5 56 89.3
Cc02_g38640 Coffea canephora HOM05D004554 ORTHO05D005360 3.2e-21 105.5 56 89.3
Lalb_Chr08g0237961 Lupinus albus HOM05D004554 ORTHO05D005360 3.2e-21 105.5 56 89.3
CsaV3_2G019720 Cucumis sativus L. HOM05D004554 ORTHO05D005360 7.2e-21 104.4 56 85.7
HanXRQChr09g0274931 Helianthus annuus HOM05D004554 ORTHO05D005360 9.4e-21 104.0 56 85.7
MD08G1243200 Malus domestica HOM05D004554 ORTHO05D005360 1.2e-20 103.6 56 87.5
MD15G1436800 Malus domestica HOM05D004554 ORTHO05D005360 1.2e-20 103.6 56 87.5
C09p27060 Brassica napus HOM05D004554 ORTHO05D005360 2.1e-20 102.8 56 85.7
CBR_g36380 Chara braunii HOM05D004554 ORTHO05D005360 6.1e-20 101.3 75 57.3
Carub.0002s2706 Capsella rubella HOM05D004554 ORTHO05D005360 7.9e-20 100.9 56 85.7
TAR626G1579 Trochodendron aralioides HOM05D004554 ORTHO05D005360 4.3e-18 95.1 50 90.0
arahy.Tifrunner.gnm1.ann1.MTW2QA Arachis hypogaea HOM05D004554 ORTHO05D005360 2.9e-14 82.4 45 84.4
RcHm_v2.0_Chr2g0154941 Rosa chinensis HOM05D004554 ORTHO05D005360 2.7e-12 75.9 44 77.3
Haze_26443 Corylus avellana HOM05D000849 ORTHO05D005360 1.4e-11 73.6 126 34.9
arahy.Tifrunner.gnm1.ann1.QTZM33 Arachis hypogaea HOM05D004554 ORTHO05D005360 1.4e-08 63.5 41 78.0
SEGI_29883 Sequoiadendron giganteum HOM05D005689 ORTHO05D007060 7.0e-08 61.2 138 26.8
QL11p051435 Quercus lobata HOM05D004554 ORTHO05D005360 9.1e-08 60.8 29 100.0
Sp7g37220 Schrenkiella parvula HOM05D005689 ORTHO05D007060 9.1e-08 60.8 135 26.7
SMO228G0084 Selaginella moellendorffii HOM05D005689 ORTHO05D007060 1.5e-07 60.1 138 29.0
Pp3c12_10830 Physcomitrium patens HOM05D005689 ORTHO05D007060 5.0e-06 55.1 138 24.6


User provided reference genes

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