Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G100900 Manihot esculenta HOM05D005382 ORTHO05D006795 4.4e-107 391.3 203 100.0
Manes.11G069200 Manihot esculenta HOM05D005382 ORTHO05D006795 6.6e-87 324.3 221 81.0
Potri.001G041900 Populus trichocarpa HOM05D005382 ORTHO05D006795 3.0e-79 298.9 201 80.1
Potri.003G184925 Populus trichocarpa HOM05D005382 ORTHO05D006795 4.0e-76 288.5 205 76.6
Sabra01G0028700 Salix brachista HOM05D005382 ORTHO05D006795 6.8e-76 287.7 201 77.6
CiPaw.01G256500 Carya illinoinensis HOM05D005382 ORTHO05D006795 1.9e-73 279.6 196 75.5
Thecc.06G046600 Theobroma cacao HOM05D005382 ORTHO05D006795 1.9e-73 279.6 203 73.4
Sabra03G0135500 Salix brachista HOM05D005382 ORTHO05D006795 4.1e-73 278.5 209 73.2
CiPaw.02G163400 Carya illinoinensis HOM05D005382 ORTHO05D006795 2.7e-72 275.8 196 76.0
Glyma.08G220400 Glycine max HOM05D005382 ORTHO05D006795 3.5e-72 275.4 195 74.4
COL.COLO4_26772 Corchorus olitorius HOM05D005382 ORTHO05D006795 3.3e-70 268.9 209 71.8
MD17G1226400 Malus domestica HOM05D005382 ORTHO05D006795 4.3e-70 268.5 208 70.2
RcHm_v2.0_Chr2g0132311 Rosa chinensis HOM05D005382 ORTHO05D006795 4.3e-70 268.5 206 71.8
TWI12G1456 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 4.3e-70 268.5 197 74.1
FAN05G5289 Fragaria x ananassa HOM05D005382 ORTHO05D006795 7.3e-70 267.7 206 71.4
Hma1.2p1_0329F.1_g127290 Hydrangea macrophylla HOM05D005382 ORTHO05D006795 9.5e-70 267.3 206 70.4
FvH4_6g28270 Fragaria vesca HOM05D005382 ORTHO05D006795 2.8e-69 265.8 206 70.4
MD09G1227600 Malus domestica HOM05D005382 ORTHO05D006795 3.6e-69 265.4 200 72.0
FAN09G0036 Fragaria x ananassa HOM05D005382 ORTHO05D006795 4.7e-69 265.0 205 69.8
ClCG09G003490 Citrullus lanatus HOM05D005382 ORTHO05D006795 4.0e-68 261.9 201 72.6
Ciclev10026461m.g Citrus clementina HOM05D005382 ORTHO05D006795 4.0e-68 261.9 194 72.2
Gorai.007G085500 Gossypium raimondii HOM05D005382 ORTHO05D006795 4.0e-68 261.9 196 73.0
Gohir.A11G075200 Gossypium hirsutum HOM05D005382 ORTHO05D006795 1.2e-67 260.4 196 72.4
MSTRG.22842 Avicennia marina HOM05D005382 ORTHO05D006795 2.6e-67 259.2 213 67.1
Cfa001857 Carpinus fangiana HOM05D005382 ORTHO05D006795 2.6e-67 259.2 178 78.1
Actinidia08935 Actinidia chinensis HOM05D005382 ORTHO05D006795 3.4e-67 258.8 216 68.1
PGR102G0492 Punica granatum HOM05D005382 ORTHO05D006795 5.8e-67 258.1 197 71.1
Glyma.07G021400 Glycine max HOM05D005382 ORTHO05D006795 7.6e-67 257.7 199 70.9
Nitab4.5_0002700g0060 Nicotiana tabacum HOM05D005382 ORTHO05D006795 7.6e-67 257.7 195 70.8
Nitab4.5_0004738g0090 Nicotiana tabacum HOM05D005382 ORTHO05D006795 9.9e-67 257.3 195 70.3
Cc04_g05300 Coffea canephora HOM05D005382 ORTHO05D006795 2.2e-66 256.1 204 69.1
QL05p036845 Quercus lobata HOM05D005382 ORTHO05D006795 2.9e-66 255.8 163 79.8
MELO3C023486.2 Cucumis melo HOM05D005382 ORTHO05D006795 3.7e-66 255.4 200 71.0
CAN.G1008.7 Capsicum annuum HOM05D005382 ORTHO05D006795 4.9e-66 255.0 194 69.1
Phvul.008G253200 Phaseolus vulgaris HOM05D005382 ORTHO05D006795 4.9e-66 255.0 199 70.4
Lj3g0027435 Lotus japonicus HOM05D005382 ORTHO05D006795 8.4e-66 254.2 196 68.9
THA.LOC104808172 Tarenaya hassleriana HOM05D005382 ORTHO05D006795 1.1e-65 253.8 206 67.5
HanXRQChr04g0100021 Helianthus annuus HOM05D005382 ORTHO05D006795 1.4e-65 253.4 202 66.8
Aa31LG4G1250 Aethionema arabicum HOM05D005382 ORTHO05D006795 2.4e-65 252.7 210 65.7
Sed0008280 Sechium edule HOM05D005382 ORTHO05D006795 4.1e-65 251.9 197 69.5
Peaxi162Scf00314g01032 Petunia axillaris HOM05D005382 ORTHO05D006795 5.4e-65 251.5 205 65.9
VMungo0647G2390 Vigna mungo HOM05D005382 ORTHO05D006795 5.4e-65 251.5 200 69.0
CSS0039254 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 2.1e-64 249.6 221 63.8
Nn8g40079 Nelumbo nucifera HOM05D005382 ORTHO05D006795 3.5e-64 248.8 203 68.0
Lsat_1_v5_gn_1_30801 Lactuca sativa HOM05D005382 ORTHO05D006795 7.8e-64 247.7 209 67.9
Medtr4g007700 Medicago truncatula HOM05D005382 ORTHO05D006795 7.8e-64 247.7 185 69.2
Eucgr.F03985 Eucalyptus grandis HOM05D005382 ORTHO05D006795 1.0e-63 247.3 198 68.7
TAR625G1145 Trochodendron aralioides HOM05D005382 ORTHO05D006795 1.0e-63 247.3 211 64.5
CsaV3_7G031710 Cucumis sativus L. HOM05D005382 ORTHO05D006795 1.7e-63 246.5 203 68.5
BcaNung04166 Brassica carinata HOM05D005382 ORTHO05D006795 2.3e-63 246.1 209 65.1
TWI75G0559 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 2.3e-63 246.1 179 75.4
GSVIVG01016103001 Vitis vinifera HOM05D005382 ORTHO05D006795 5.1e-63 245.0 202 69.3
FAN02G4537 Fragaria x ananassa HOM05D005382 ORTHO05D006795 6.6e-63 244.6 181 73.5
FAN14G0578 Fragaria x ananassa HOM05D005382 ORTHO05D006795 6.6e-63 244.6 182 72.5
ECA247G2189 Erigeron canadensis HOM05D005382 ORTHO05D006795 1.1e-62 243.8 195 67.7
ECA232G4196 Erigeron canadensis HOM05D005382 ORTHO05D006795 1.5e-62 243.4 202 66.3
MSTRG.9395 Avicennia marina HOM05D005382 ORTHO05D006795 1.9e-62 243.0 195 68.2
A07p26960 Brassica napus HOM05D005382 ORTHO05D006795 2.5e-62 242.7 211 66.4
BraA07t30340Z Brassica rapa HOM05D005382 ORTHO05D006795 2.5e-62 242.7 211 66.4
Haze_16689 Corylus avellana HOM05D005382 ORTHO05D006795 3.3e-62 242.3 152 82.2
DCAR_021374 Daucus carota HOM05D005382 ORTHO05D006795 3.3e-62 242.3 205 64.9
Thhalv10019121m.g Eutrema salsugineum HOM05D005382 ORTHO05D006795 3.3e-62 242.3 208 64.4
Prupe.3G103600 Prunus persica HOM05D005382 ORTHO05D006795 4.3e-62 241.9 148 83.1
Nn8g40087 Nelumbo nucifera HOM05D005382 ORTHO05D006795 5.6e-62 241.5 203 65.5
Migut.I00626 Erythranthe guttata HOM05D005382 ORTHO05D006795 9.6e-62 240.7 221 62.4
C06p29630 Brassica napus HOM05D005382 ORTHO05D006795 1.2e-61 240.4 211 64.0
Carub.0002s2660 Capsella rubella HOM05D005382 ORTHO05D006795 1.2e-61 240.4 214 63.6
Dinv21426 Davidia involucrata HOM05D005382 ORTHO05D006795 1.2e-61 240.4 208 65.9
SGA_v2.0_scaffold515G52664 Striga asiatica HOM05D003096 ORTHO05D003521 1.2e-61 240.4 191 68.1
Rhsim08G0203100 Rhododendron simsii HOM05D005382 ORTHO05D006795 1.6e-61 240.0 217 64.1
AT1G80940 Arabidopsis thaliana HOM05D005382 ORTHO05D006795 2.8e-61 239.2 193 66.3
Gohir.D11G079900 Gossypium hirsutum HOM05D005382 ORTHO05D006795 2.8e-61 239.2 175 74.3
Eucgr.J03130 Eucalyptus grandis HOM05D005382 ORTHO05D006795 3.6e-61 238.8 195 67.2
EL10Ac8g19398 Beta vulgaris HOM05D005382 ORTHO05D006795 4.7e-61 238.4 199 65.8
BolC6t38128H Brassica oleracea HOM05D005382 ORTHO05D006795 6.2e-61 238.0 198 65.7
Lalb_Chr25g0278731 Lupinus albus HOM05D005382 ORTHO05D006795 6.2e-61 238.0 191 66.0
HanXRQChr09g0274181 Helianthus annuus HOM05D005382 ORTHO05D006795 1.1e-60 237.3 206 65.5
AL2G40440 Arabidopsis lyrata HOM05D005382 ORTHO05D006795 1.8e-60 236.5 207 62.8
Oeu003125.1 Olea europaea HOM05D005382 ORTHO05D006795 4.0e-60 235.3 164 76.2
SalBow1G1272 Salvia bowleyana HOM05D005382 ORTHO05D006795 4.0e-60 235.3 167 74.9
vmacro16842 Vaccinium macrocarpon HOM05D005382 ORTHO05D006795 4.0e-60 235.3 161 77.6
BcaB02g07237 Brassica carinata HOM05D005382 ORTHO05D006795 5.2e-60 235.0 202 64.9
MSTRG.11221 Avicennia marina HOM05D005382 ORTHO05D006795 6.8e-60 234.6 214 61.7
Duzib235G0288 Durio zibethinus HOM05D005382 ORTHO05D006795 8.9e-60 234.2 156 78.8
Rhsim12G0185400 Rhododendron simsii HOM05D005382 ORTHO05D006795 8.9e-60 234.2 240 60.4
Sp5g34800 Schrenkiella parvula HOM05D005382 ORTHO05D006795 8.9e-60 234.2 208 62.5
Duzib192G0805 Durio zibethinus HOM05D005382 ORTHO05D006795 1.2e-59 233.8 156 77.6
A07p44750 Brassica napus HOM05D005382 ORTHO05D006795 1.5e-59 233.4 215 63.3
Lj5A81T85 Lonicera japonica HOM05D005382 ORTHO05D006795 2.6e-59 232.6 162 73.5
Sopen03g036580 Solanum pennellii HOM05D005382 ORTHO05D006795 2.6e-59 232.6 203 63.1
BcaC08g47533 Brassica carinata HOM05D005382 ORTHO05D006795 3.4e-59 232.3 204 62.7
BolC6t40373H Brassica oleracea HOM05D005382 ORTHO05D006795 3.4e-59 232.3 204 62.7
Oeu051555.1 Olea europaea HOM05D005382 ORTHO05D006795 3.4e-59 232.3 158 77.8
BraA07t31983Z Brassica rapa HOM05D005382 ORTHO05D006795 7.6e-59 231.1 215 62.8
Solyc03g117670.4 Solanum lycopersicum HOM05D005382 ORTHO05D006795 7.6e-59 231.1 203 62.6
AUR62032996 Chenopodium quinoa HOM05D005382 ORTHO05D006795 1.7e-58 229.9 200 64.5
C06p53570 Brassica napus HOM05D005382 ORTHO05D006795 2.9e-58 229.2 193 64.2
CDE04G1090 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 4.9e-58 228.4 201 65.2
BcaB02g08711 Brassica carinata HOM05D005382 ORTHO05D006795 8.4e-58 227.6 218 60.6
MBI15_g08404_MAGBIO Magnolia biondii HOM05D005382 ORTHO05D006795 8.4e-58 227.6 201 64.7
PSO063G0682 Papaver somniferum HOM05D005382 ORTHO05D006795 1.1e-57 227.3 210 66.2
PSO782G0145 Papaver somniferum HOM05D005382 ORTHO05D006795 1.1e-57 227.3 209 66.0
TPR.G3367 Trifolium pratense HOM05D005382 ORTHO05D006795 1.1e-57 227.3 173 69.4
CARHR073510 Cardamine hirsuta HOM05D005382 ORTHO05D006795 4.2e-57 225.3 165 72.7
Psat7g262200 Pisum sativum HOM05D005382 ORTHO05D006795 9.3e-57 224.2 171 68.4
Lalb_Chr01g0011991 Lupinus albus HOM05D005382 ORTHO05D006795 1.6e-56 223.4 192 62.5
Sc12g0008250 Simmondsia chinensis HOM05D005382 ORTHO05D006795 2.1e-56 223.0 198 63.1
SGA_v2.0_scaffold74G24593 Striga asiatica HOM05D005382 ORTHO05D006795 4.6e-56 221.9 186 64.0
Lsat_1_v5_gn_4_85061 Lactuca sativa HOM05D005382 ORTHO05D006795 1.7e-55 219.9 215 59.5
PGSC0003DMG400014155 Solanum tuberosum HOM05D005382 ORTHO05D006795 1.1e-54 217.2 137 77.4
AUR62034069 Chenopodium quinoa HOM05D007611 ORTHO05D006795 1.3e-53 213.8 165 69.7
Os02g0793900 Oryza sativa ssp. japonica HOM05D005382 ORTHO05D006795 5.3e-52 208.4 201 62.2
CDE07G1687 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 3.4e-51 205.7 130 81.5
HPP92_010348 Vanilla planifolia HOM05D005382 ORTHO05D006795 3.4e-51 205.7 199 59.3
Zm00001eb257680 Zea mays HOM05D005382 ORTHO05D006795 3.4e-51 205.7 204 58.3
arahy.Tifrunner.gnm1.ann1.HUQR60 Arachis hypogaea HOM05D005382 ORTHO05D006795 7.1e-49 198.0 200 58.5
arahy.Tifrunner.gnm1.ann1.7IZ6IW Arachis hypogaea HOM05D005382 ORTHO05D006795 1.2e-48 197.2 200 58.0
Cpa.g.c28380.1 Carica papaya HOM05D005382 ORTHO05D006795 1.7e-47 193.4 128 76.6
CANSAT56G2690 Cannabis sativa HOM05D005382 ORTHO05D006795 3.9e-47 192.2 187 58.8
ATR0580G392 Amborella trichopoda HOM05D005382 ORTHO05D006795 1.9e-46 189.9 191 60.2
SEGI_41275 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 7.6e-43 177.9 130 71.5
Mapoly0128s0009 Marchantia polymorpha HOM05D005382 ORTHO05D006795 2.2e-42 176.4 133 69.2
SMO145G0139 Selaginella moellendorffii HOM05D005382 ORTHO05D006795 1.4e-41 173.7 128 65.6
Ah.14g085670 Amaranthus hybridus HOM05D005382 ORTHO05D006795 1.9e-41 173.3 198 54.5
Pp3c16_25700 Physcomitrium patens HOM05D005382 ORTHO05D006795 6.0e-40 168.3 134 64.9
Pp3c25_9780 Physcomitrium patens HOM05D005382 ORTHO05D006795 1.8e-39 166.8 134 64.9
Atru.chr1.2804_Atru.chr1.2805 Acer truncatum HOM05D005382 ORTHO05D006795 4.5e-35 152.1 210 51.0
Actinidia36864 Actinidia chinensis HOM05D005382 ORTHO05D006795 2.5e-33 146.4 194 49.5
SEGI_02613 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 2.7e-32 142.9 110 64.5
BcaB07g33703 Brassica carinata HOM05D005382 ORTHO05D006795 3.5e-32 142.5 126 61.9
Hund12559 Selenicereus undatus HOM05D005382 ORTHO05D006795 8.7e-31 137.9 131 62.6
CSS0015514 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 4.8e-29 132.1 71 93.0
BcaB07g33704 Brassica carinata HOM05D005382 ORTHO05D006795 2.1e-24 116.7 75 78.7
BcaB07g33705 Brassica carinata HOM05D005382 ORTHO05D006795 2.1e-24 116.7 75 78.7
unitig_22.g6275 Utricularia gibba HOM05D005382 ORTHO05D006795 3.5e-24 115.9 77 79.2
Actinidia26580 Actinidia chinensis HOM05D005382 ORTHO05D006795 3.1e-20 102.8 70 78.6
AagrBONN_evm.TU.Sc2ySwM_117.2014 Anthoceros agrestis HOM05D005382 ORTHO05D006795 8.5e-18 94.7 70 71.4
Actinidia26581 Actinidia chinensis HOM05D005382 ORTHO05D054410 3.8e-10 69.3 125 40.0
TPR.G1583 Trifolium pratense HOM05D005382 ORTHO05D006795 3.8e-10 69.3 45 77.8


User provided reference genes

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