Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G099700 Manihot esculenta HOM05D003691 ORTHO05D004288 0.0e+00 1349.7 668 100.0
Potri.014G155900 Populus trichocarpa HOM05D003691 ORTHO05D004288 5.4e-279 964.1 659 74.5
Sabra14G0117900 Salix brachista HOM05D003691 ORTHO05D004288 9.5e-276 953.4 659 74.1
Haze_12800 Corylus avellana HOM05D003691 ORTHO05D004288 8.9e-274 946.8 670 70.6
Dinv39731 Davidia involucrata HOM05D003691 ORTHO05D004288 4.3e-268 927.9 670 70.4
GSVIVG01030475001 Vitis vinifera HOM05D003691 ORTHO05D004288 2.2e-264 915.6 677 69.7
TWI75G0495 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 3.7e-264 914.8 667 69.6
CiPaw.03G157800 Carya illinoinensis HOM05D003691 ORTHO05D004288 1.4e-263 912.9 670 70.3
QL08p031532 Quercus lobata HOM05D003691 ORTHO05D004288 1.4e-263 912.9 661 71.7
Dinv08745 Davidia involucrata HOM05D003691 ORTHO05D004288 3.2e-263 911.8 662 70.8
Hma1.2p1_0895F.1_g233770 Hydrangea macrophylla HOM05D003691 ORTHO05D004288 9.2e-263 910.2 679 68.9
TWI36G1355 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 7.8e-262 907.1 668 69.9
Atru.chr6.3228 Acer truncatum HOM05D003691 ORTHO05D004288 2.5e-260 902.1 672 69.5
Duzib138G0684 Durio zibethinus HOM05D003691 ORTHO05D004288 4.9e-256 887.9 666 68.6
Thecc.01G178100 Theobroma cacao HOM05D003691 ORTHO05D004288 1.1e-255 886.7 678 66.8
Prupe.3G213700 Prunus persica HOM05D003691 ORTHO05D004288 1.4e-255 886.3 662 68.4
FAN05G1959 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.4e-250 869.8 668 67.2
FAN14G5114 Fragaria x ananassa HOM05D003691 ORTHO05D004288 2.4e-250 869.0 669 67.3
RcHm_v2.0_Chr2g0158621 Rosa chinensis HOM05D003691 ORTHO05D004288 5.2e-250 867.8 666 67.4
Gohir.D07G088400 Gossypium hirsutum HOM05D003691 ORTHO05D004288 1.2e-249 866.7 663 68.0
MD09G1071300 Malus domestica HOM05D003691 ORTHO05D004288 2.6e-249 865.5 660 66.7
vmacro09345 Vaccinium macrocarpon HOM05D003691 ORTHO05D004288 2.6e-249 865.5 690 64.9
Ciclev10014542m.g Citrus clementina HOM05D003691 ORTHO05D004288 3.4e-249 865.1 666 68.0
FAN09G0430 Fragaria x ananassa HOM05D003691 ORTHO05D004288 3.4e-249 865.1 668 66.8
Gohir.A07G081900 Gossypium hirsutum HOM05D003691 ORTHO05D004288 7.6e-249 864.0 673 67.0
Gorai.001G094600 Gossypium raimondii HOM05D003691 ORTHO05D004288 4.9e-248 861.3 673 67.0
FvH4_6g42730 Fragaria vesca HOM05D003691 ORTHO05D004288 8.4e-248 860.5 679 66.1
Duzib211G0477 Durio zibethinus HOM05D003691 ORTHO05D004288 7.3e-244 847.4 664 66.7
CANSAT64G0165 Cannabis sativa HOM05D003691 ORTHO05D004288 1.6e-243 846.3 666 66.2
Rhsim04G0052200 Rhododendron simsii HOM05D003691 ORTHO05D004288 5.3e-242 841.3 677 65.1
Sed0022442 Sechium edule HOM05D003691 ORTHO05D004288 2.0e-241 839.3 664 66.1
TAR624G0007 Trochodendron aralioides HOM05D003691 ORTHO05D004288 4.5e-241 838.2 668 65.9
FAN02G0990 Fragaria x ananassa HOM05D003691 ORTHO05D004288 2.9e-240 835.5 668 65.1
ClCG02G009060 Citrullus lanatus HOM05D003691 ORTHO05D004288 1.2e-238 830.1 664 65.5
CsaV3_2G034670 Cucumis sativus L. HOM05D003691 ORTHO05D004288 5.3e-234 814.7 664 64.6
Carub.0004s1392 Capsella rubella HOM05D003691 ORTHO05D004288 1.2e-233 813.5 672 63.4
THA.LOC104816038 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 2.6e-233 812.4 683 63.8
PGR042G1566 Punica granatum HOM05D003691 ORTHO05D004288 1.3e-232 810.1 664 64.9
Sp4g14920 Schrenkiella parvula HOM05D003691 ORTHO05D004288 2.2e-232 809.3 674 63.2
CARHR126440 Cardamine hirsuta HOM05D003691 ORTHO05D004288 6.4e-232 807.7 677 62.3
MBI07_g01730_MAGBIO Magnolia biondii HOM05D003691 ORTHO05D004288 1.4e-231 806.6 645 65.0
MELO3C019300.2 Cucumis melo HOM05D003691 ORTHO05D004288 1.9e-231 806.2 662 63.9
Thhalv10016359m.g Eutrema salsugineum HOM05D003691 ORTHO05D004288 1.9e-231 806.2 674 63.2
Oeu027232.1 Olea europaea HOM05D003691 ORTHO05D004288 5.5e-231 804.7 655 63.8
Lalb_Chr03g0028581 Lupinus albus HOM05D003691 ORTHO05D004288 9.3e-231 803.9 681 62.1
Nn1g03443 Nelumbo nucifera HOM05D003691 ORTHO05D004288 1.2e-230 803.5 670 61.9
AL4G27990 Arabidopsis lyrata HOM05D003691 ORTHO05D004288 7.9e-230 800.8 676 62.3
arahy.Tifrunner.gnm1.ann1.4D79G7 Arachis hypogaea HOM05D003691 ORTHO05D004288 7.9e-230 800.8 680 64.1
Sopen07g025100 Solanum pennellii HOM05D003691 ORTHO05D004288 7.9e-230 800.8 663 62.7
BraA04t18015Z Brassica rapa HOM05D003691 ORTHO05D004288 1.8e-229 799.7 676 62.9
arahy.Tifrunner.gnm1.ann1.AS5DTW Arachis hypogaea HOM05D003691 ORTHO05D004288 3.9e-229 798.5 680 64.0
A04p25040 Brassica napus HOM05D003691 ORTHO05D004288 5.1e-229 798.1 676 63.2
Lj3g0007999 Lotus japonicus HOM05D003691 ORTHO05D004288 8.7e-229 797.3 678 62.2
PSO210G5093 Papaver somniferum HOM05D003691 ORTHO05D004288 1.1e-228 797.0 663 63.0
Solyc07g049680.4 Solanum lycopersicum HOM05D003691 ORTHO05D004288 1.1e-228 797.0 663 62.3
Migut.M00432 Erythranthe guttata HOM05D003691 ORTHO05D004288 1.9e-228 796.2 662 63.7
Sc12g0002210 Simmondsia chinensis HOM05D003691 ORTHO05D004288 9.6e-228 793.9 676 62.4
A05p13290 Brassica napus HOM05D003691 ORTHO05D004288 1.3e-227 793.5 676 62.6
PGSC0003DMG400001077 Solanum tuberosum HOM05D003691 ORTHO05D004288 2.8e-227 792.3 660 62.6
BraA05t20270Z Brassica rapa HOM05D003691 ORTHO05D004288 3.1e-226 788.9 677 62.6
DCAR_019753 Daucus carota HOM05D003691 ORTHO05D004288 3.1e-226 788.9 660 62.3
C04p17080 Brassica napus HOM05D003691 ORTHO05D004288 5.3e-226 788.1 677 62.0
Lj8A127T48 Lonicera japonica HOM05D003691 ORTHO05D004288 5.3e-226 788.1 583 68.6
Cc05_g03670 Coffea canephora HOM05D003691 ORTHO05D004288 1.5e-225 786.6 704 61.6
Glyma.06G308100 Glycine max HOM05D003691 ORTHO05D004288 5.8e-225 784.6 667 62.7
SGA_v2.0_scaffold70G23393 Striga asiatica HOM05D003691 ORTHO05D004288 5.8e-225 784.6 662 63.6
Medtr4g050060 Medicago truncatula HOM05D003691 ORTHO05D004288 1.0e-224 783.9 678 61.5
AT2G32590 Arabidopsis thaliana HOM05D003691 ORTHO05D004288 2.9e-224 782.3 677 61.7
TAR626G1388 Trochodendron aralioides HOM05D003691 ORTHO05D004288 2.9e-224 782.3 607 67.2
TPR.G4630 Trifolium pratense HOM05D003691 ORTHO05D004288 3.8e-224 781.9 678 61.7
Eucgr.A01107 Eucalyptus grandis HOM05D003691 ORTHO05D004288 4.9e-224 781.6 670 63.1
Glyma.12G096700 Glycine max HOM05D003691 ORTHO05D004288 4.9e-224 781.6 667 62.8
Phvul.011G101300 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 1.4e-223 780.0 666 62.3
BolC4t23260H Brassica oleracea HOM05D003691 ORTHO05D004288 5.5e-223 778.1 692 60.7
MSTRG.14857 Avicennia marina HOM05D003691 ORTHO05D004288 2.3e-221 772.7 662 61.2
Nitab4.5_0000130g0240 Nicotiana tabacum HOM05D003691 ORTHO05D004288 1.1e-220 770.4 674 60.5
DCAR_021155 Daucus carota HOM05D003691 ORTHO05D004288 1.9e-220 769.6 661 61.6
Nitab4.5_0015742g0010 Nicotiana tabacum HOM05D003691 ORTHO05D004288 4.3e-220 768.5 673 61.1
ECA236G1051 Erigeron canadensis HOM05D003691 ORTHO05D004288 1.3e-219 766.9 673 61.5
QL08p006881 Quercus lobata HOM05D003691 ORTHO05D004288 1.6e-219 766.5 663 61.5
VMungo1127G0496 Vigna mungo HOM05D003691 ORTHO05D004288 8.2e-219 764.2 669 61.4
Aqoxy1G03453 Aquilegia oxysepala HOM05D003691 ORTHO05D004288 4.5e-217 758.4 683 60.0
CAN.G290.10 Capsicum annuum HOM05D003691 ORTHO05D004288 7.7e-217 757.7 658 60.8
Psat7g203760 Pisum sativum HOM05D003691 ORTHO05D004288 8.5e-216 754.2 668 60.6
ECA240G1119 Erigeron canadensis HOM05D003691 ORTHO05D004288 4.2e-215 751.9 667 60.4
Aa31LG5G4740 Aethionema arabicum HOM05D003691 ORTHO05D004288 4.6e-214 748.4 675 59.1
HanXRQChr04g0126971 Helianthus annuus HOM05D003691 ORTHO05D004288 5.1e-213 745.0 670 61.2
THA.LOC104826143 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 1.9e-212 743.0 687 58.8
SalBow7G1078 Salvia bowleyana HOM05D003691 ORTHO05D004288 2.4e-210 736.1 675 59.1
Lsat_1_v5_gn_7_93200 Lactuca sativa HOM05D003691 ORTHO05D004288 3.1e-210 735.7 670 60.3
Cfa020301 Carpinus fangiana HOM05D003691 ORTHO05D004288 3.4e-209 732.3 678 58.6
Hund02023 Selenicereus undatus HOM05D003691 ORTHO05D004288 7.7e-209 731.1 715 55.5
Phvul.005G116900 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 1.7e-208 729.9 666 58.9
Glyma.12G191300 Glycine max HOM05D003691 ORTHO05D004288 1.1e-207 727.2 687 56.8
Prupe.4G220400 Prunus persica HOM05D003691 ORTHO05D004288 3.6e-206 722.2 678 58.0
Thecc.07G031000 Theobroma cacao HOM05D003691 ORTHO05D004288 3.6e-206 722.2 678 58.6
Atru.chr2.3500 Acer truncatum HOM05D003691 ORTHO05D004288 4.7e-206 721.8 690 57.1
Ca_19493_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 4.4e-204 715.3 683 57.4
VMungo1080G0849 Vigna mungo HOM05D003691 ORTHO05D004288 3.7e-203 712.2 668 56.7
Medtr2g087880 Medicago truncatula HOM05D003691 ORTHO05D004288 2.4e-202 709.5 671 57.4
EL10Ac4g07751 Beta vulgaris HOM05D003691 ORTHO05D004288 3.8e-200 702.2 684 54.4
Peaxi162Scf00007g00129 Petunia axillaris HOM05D003691 ORTHO05D004288 3.0e-197 692.6 663 56.9
Psat5g261240 Pisum sativum HOM05D003691 ORTHO05D004288 5.7e-196 688.3 663 56.4
TPR.G4243 Trifolium pratense HOM05D003691 ORTHO05D004288 5.7e-196 688.3 683 55.1
AUR62015833 Chenopodium quinoa HOM05D003691 ORTHO05D004288 2.8e-195 686.0 698 54.6
Ciclev10007620m.g Citrus clementina HOM05D003691 ORTHO05D004288 1.4e-194 683.7 698 55.3
LjContig00274_ERROPOS1100000g0006521 Lotus japonicus HOM05D003691 ORTHO05D004288 9.1e-194 681.0 599 60.3
Cpa.g.sc87.104 Carica papaya HOM05D003691 ORTHO05D004288 1.0e-192 677.6 512 68.8
ATR0317G123 Amborella trichopoda HOM05D003691 ORTHO05D004288 6.1e-190 668.3 662 56.0
Ca_01616_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 6.1e-190 668.3 702 53.6
Ah.06g182530 Amaranthus hybridus HOM05D003691 ORTHO05D004288 8.8e-189 664.5 685 54.0
Lsat_1_v5_gn_9_106740 Lactuca sativa HOM05D003691 ORTHO05D004288 2.6e-188 662.9 671 55.3
BcaB06g28605 Brassica carinata HOM05D003691 ORTHO05D004288 1.3e-187 660.6 632 58.7
CSS0013476 Camellia sinensis var. sinensis HOM05D003691 ORTHO05D004288 3.1e-186 656.0 501 66.5
HPP92_023149 Vanilla planifolia HOM05D003691 ORTHO05D004288 1.3e-184 650.6 651 55.8
RcHm_v2.0_Chr5g0041001 Rosa chinensis HOM05D003691 ORTHO05D004288 2.5e-183 646.4 654 54.7
Haze_09719 Corylus avellana HOM05D003691 ORTHO05D004288 2.0e-180 636.7 732 51.1
FvH4_3g23280 Fragaria vesca HOM05D003691 ORTHO05D004288 3.4e-180 636.0 655 54.4
BcaB06g28606 Brassica carinata HOM05D003691 ORTHO05D004288 1.4e-178 630.6 678 53.7
BcaB02g10460 Brassica carinata HOM05D003691 ORTHO05D004288 9.1e-178 627.9 510 65.1
MD11G1212100 Malus domestica HOM05D003691 ORTHO05D004288 9.1e-178 627.9 642 53.3
FAN21G2044 Fragaria x ananassa HOM05D003691 ORTHO05D004288 5.5e-175 618.6 655 53.9
GSVIVG01037701001 Vitis vinifera HOM05D003691 ORTHO05D004288 2.1e-174 616.7 662 53.3
Zm00001eb162990 Zea mays HOM05D003691 ORTHO05D004288 1.7e-168 597.0 650 52.2
Hund02022 Selenicereus undatus HOM05D003691 ORTHO05D004288 2.4e-162 576.6 691 48.2
CiPaw.11G193000 Carya illinoinensis HOM05D003691 ORTHO05D004288 6.6e-160 568.5 512 60.7
Hund02025 Selenicereus undatus HOM05D003691 ORTHO05D004288 9.5e-159 564.7 689 48.2
BolC4t27689H Brassica oleracea HOM05D003691 ORTHO05D004288 1.7e-155 553.9 530 57.4
FAN11G2344 Fragaria x ananassa HOM05D003691 ORTHO05D004288 2.2e-155 553.5 593 51.9
AUR62020387 Chenopodium quinoa HOM05D003691 ORTHO05D004288 1.9e-151 540.4 690 47.0
Dinv22243 Davidia involucrata HOM05D003691 ORTHO05D004288 3.6e-150 536.2 551 55.9
Gohir.A07G186000 Gossypium hirsutum HOM05D003691 ORTHO05D004288 6.4e-147 525.4 442 62.4
unitig_60.g25819 Utricularia gibba HOM05D003691 ORTHO05D004288 2.3e-144 516.9 665 48.0
C04p62100 Brassica napus HOM05D003691 ORTHO05D004288 5.6e-143 512.3 461 61.4
COL.COLO4_09704 Corchorus olitorius HOM05D003691 ORTHO05D004288 3.6e-142 509.6 502 58.6
BcaC02g07908 Brassica carinata HOM05D003691 ORTHO05D004288 3.9e-136 489.6 650 46.6
Actinidia10811 Actinidia chinensis HOM05D003691 ORTHO05D004288 1.5e-124 451.1 447 57.5
SEGI_30766 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 2.6e-124 450.3 565 48.3
Pp3c11_22430 Physcomitrium patens HOM05D003691 ORTHO05D004288 3.8e-123 446.4 687 42.8
AUR62015832 Chenopodium quinoa HOM05D003691 ORTHO05D004288 9.3e-122 441.8 604 45.4
Lj8A171G44 Lonicera japonica HOM05D003691 ORTHO05D004288 2.5e-119 433.7 492 51.4
Mapoly0002s0133 Marchantia polymorpha HOM05D003691 ORTHO05D004288 8.1e-118 428.7 692 40.0
AagrBONN_evm.TU.Sc2ySwM_228.2537 Anthoceros agrestis HOM05D003691 ORTHO05D004288 3.9e-112 409.8 678 41.2
Lalb_Chr19g0136071 Lupinus albus HOM05D003691 ORTHO05D004288 1.6e-110 404.4 374 60.4
AUR62020385 Chenopodium quinoa HOM05D003691 ORTHO05D004288 3.4e-108 396.7 307 67.1
SEGI_37895 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 4.2e-106 389.8 554 44.8
Oeu036739.1 Olea europaea HOM05D003691 ORTHO05D004288 5.1e-104 382.9 261 77.0
Lalb_Chr19g0136061 Lupinus albus HOM05D003691 ORTHO05D004288 2.5e-98 364.0 288 62.2
CBR_g26183 Chara braunii HOM05D003691 ORTHO05D004288 2.3e-96 357.5 796 34.7
FAN25G2100 Fragaria x ananassa HOM05D003691 ORTHO05D004288 6.9e-93 345.9 288 64.6
Pp3c7_4280 Physcomitrium patens HOM05D003691 ORTHO05D004288 9.1e-93 345.5 692 38.0
MD03G1195700 Malus domestica HOM05D003691 ORTHO05D004288 1.2e-92 345.1 413 46.5
SHI10368 Sapria himalayana HOM05D003691 ORTHO05D004288 2.7e-81 307.4 420 47.4
FAN25G2879 Fragaria x ananassa HOM05D003691 ORTHO05D004288 5.5e-74 283.1 344 47.1
Os01g0532800 Oryza sativa ssp. japonica HOM05D003691 ORTHO05D004288 1.2e-71 275.4 317 46.4
MD17G1101300 Malus domestica HOM05D003691 ORTHO05D004288 1.4e-69 268.5 262 58.4
MCO04G245 Micromonas commoda HOM05D003691 ORTHO05D004288 5.0e-67 260.0 653 33.8
PRCOL_00002032 Prasinoderma coloniale HOM05D003691 ORTHO05D004288 4.0e-64 250.4 624 33.3
Actinidia10812 Actinidia chinensis HOM05D003691 ORTHO05D004288 1.0e-59 235.7 210 56.2
CDE09G1127 Ceratophyllum demersum HOM05D003691 ORTHO05D004288 1.0e-48 199.1 232 54.3
Sed0010458 Sechium edule HOM05D003691 ORTHO05D004288 1.9e-45 188.3 250 45.2
Cfa026695 Carpinus fangiana HOM05D003691 ORTHO05D004288 1.2e-39 169.1 710 25.9
Lj8A171G43 Lonicera japonica HOM05D003691 ORTHO05D004288 1.7e-35 155.2 148 52.0
C04p62090 Brassica napus HOM05D003691 ORTHO05D004288 1.9e-29 135.2 130 55.4
MD03G1195600 Malus domestica HOM05D003691 ORTHO05D004288 3.5e-28 131.0 165 48.5
SHI10371 Sapria himalayana HOM05D003691 ORTHO05D004288 7.6e-23 113.2 88 72.7
Dinv22244 Davidia involucrata HOM05D007542 ORTHO05D009519 1.6e-20 105.5 83 60.2
arahy.Tifrunner.gnm1.ann1.NAA2I0 Arachis hypogaea HOM05D003691 ORTHO05D004288 3.5e-20 104.4 61 86.9
SEGI_16706 Sequoiadendron giganteum HOM05D003691 ORTHO05D017750 4.6e-20 104.0 115 51.3
CAN.G574.39 Capsicum annuum HOM05D003691 ORTHO05D004288 1.0e-19 102.8 88 59.1
CAN.G574.40 Capsicum annuum HOM05D003691 ORTHO05D004288 3.1e-16 91.3 68 64.7
EL10Ac4g08622 Beta vulgaris HOM05D003691 ORTHO05D019836 4.0e-16 90.9 126 42.1
SEGI_15855 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 5.3e-16 90.5 96 52.1
ATR0772G025 Amborella trichopoda HOM05D003691 ORTHO05D004288 5.8e-15 87.0 104 44.2
Lj8A127T49 Lonicera japonica HOM05D003691 ORTHO05D004288 5.8e-15 87.0 77 61.0
Rhsim07G0255900 Rhododendron simsii HOM05D000234 ORTHO05D004288 7.6e-15 86.7 108 49.1
Dinv17119 Davidia involucrata HOM05D003691 ORTHO05D004288 2.4e-13 81.6 80 52.5
MD17G1101200 Malus domestica HOM05D003691 ORTHO05D004288 4.6e-12 77.4 87 47.1
Dinv18681 Davidia involucrata HOM05D003691 ORTHO05D004288 1.0e-11 76.3 48 68.8
SHI10370 Sapria himalayana HOM05D000105 ORTHO05D000023 1.3e-11 75.9 49 75.5
FAN16G1928 Fragaria x ananassa HOM05D003691 ORTHO05D004288 3.0e-11 74.7 88 50.0
Dinv01749 Davidia involucrata HOM05D003691 ORTHO05D004288 5.1e-11 73.9 47 68.1
TPR.G2961 Trifolium pratense HOM05D001978 ORTHO05D003036 6.6e-11 73.6 53 60.4
Actinidia03601 Actinidia chinensis HOM05D003691 ORTHO05D004288 8.7e-11 73.2 51 72.5
Glyma.13G310451 Glycine max HOM05D003691 ORTHO05D004288 1.1e-10 72.8 50 64.0
TPR.G35222 Trifolium pratense HOM05D003691 ORTHO05D004288 1.1e-10 72.8 59 57.6
MD17G1101000 Malus domestica HOM05D003691 ORTHO05D004288 5.8e-07 60.5 46 54.3


User provided reference genes

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