Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G099000 Manihot esculenta HOM05D003613 ORTHO05D004055 5.9e-46 187.2 96 100.0
Manes.11G070600 Manihot esculenta HOM05D003613 ORTHO05D004055 7.8e-38 160.2 96 88.5
Atru.chr1.2819 Acer truncatum HOM05D003613 ORTHO05D004055 6.8e-34 147.1 97 77.3
ClCG10G012830 Citrullus lanatus HOM05D003613 ORTHO05D004055 4.4e-33 144.4 97 78.4
CsaV3_3G032670 Cucumis sativus L. HOM05D003613 ORTHO05D004055 5.8e-33 144.1 97 78.4
MELO3C024884.2 Cucumis melo HOM05D003613 ORTHO05D004055 2.2e-32 142.1 97 77.3
Eucgr.F03989 Eucalyptus grandis HOM05D003613 ORTHO05D004055 2.9e-32 141.7 97 78.4
CiPaw.01G052100 Carya illinoinensis HOM05D003613 ORTHO05D004055 6.4e-32 140.6 97 76.3
Potri.001G038750 Populus trichocarpa HOM05D003613 ORTHO05D004055 6.4e-32 140.6 97 75.3
Potri.001G038200 Populus trichocarpa HOM05D003613 ORTHO05D004055 1.9e-31 139.0 97 74.2
Potri.003G186400 Populus trichocarpa HOM05D003613 ORTHO05D004055 2.4e-31 138.7 97 74.2
TWI75G1756 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 2.4e-31 138.7 97 76.3
Potri.001G040300 Populus trichocarpa HOM05D003613 ORTHO05D004055 4.1e-31 137.9 97 74.2
TWI31G1088 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 4.1e-31 137.9 94 77.7
Cfa004173 Carpinus fangiana HOM05D003613 ORTHO05D004055 5.4e-31 137.5 97 76.3
Sed0006875 Sechium edule HOM05D003613 ORTHO05D004055 5.4e-31 137.5 96 72.9
Haze_15237 Corylus avellana HOM05D003613 ORTHO05D004055 1.6e-30 136.0 97 75.3
Sabra03G0136400 Salix brachista HOM05D003613 ORTHO05D004055 6.0e-30 134.0 88 76.1
Sed0012530 Sechium edule HOM05D003613 ORTHO05D004055 7.8e-30 133.7 94 74.5
Haze_16413 Corylus avellana HOM05D003613 ORTHO05D004055 1.3e-29 132.9 97 73.2
Haze_16416 Corylus avellana HOM05D003613 ORTHO05D004055 1.3e-29 132.9 97 73.2
Dinv21437 Davidia involucrata HOM05D003613 ORTHO05D004055 2.3e-29 132.1 104 72.1
Gohir.A06G141700 Gossypium hirsutum HOM05D003613 ORTHO05D004055 2.3e-29 132.1 97 72.2
Gohir.D06G146000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 3.0e-29 131.7 97 71.1
Gorai.010G170200 Gossypium raimondii HOM05D003613 ORTHO05D004055 3.0e-29 131.7 97 71.1
RcHm_v2.0_Chr2g0131951 Rosa chinensis HOM05D003613 ORTHO05D004055 3.0e-29 131.7 97 70.1
Thecc.06G133700 Theobroma cacao HOM05D003613 ORTHO05D004055 3.9e-29 131.3 97 71.1
Ciclev10026842m.g Citrus clementina HOM05D003613 ORTHO05D004055 8.6e-29 130.2 97 69.1
Sabra03G0136500 Salix brachista HOM05D003613 ORTHO05D004055 8.6e-29 130.2 87 74.7
MELO3C029246.2 Cucumis melo HOM05D003613 ORTHO05D004055 1.5e-28 129.4 97 71.1
CsaV3_7G031790 Cucumis sativus L. HOM05D003613 ORTHO05D004055 1.5e-28 129.4 97 72.2
Prupe.3G105500 Prunus persica HOM05D003613 ORTHO05D004055 1.9e-28 129.0 97 72.2
Duzib235G1294 Durio zibethinus HOM05D003613 ORTHO05D004055 5.6e-28 127.5 97 69.1
VMungo0540G1949 Vigna mungo HOM05D003613 ORTHO05D004055 5.6e-28 127.5 97 70.1
Phvul.006G195900 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 7.3e-28 127.1 97 71.1
Cpa.g.sc68.45 Carica papaya HOM05D003613 ORTHO05D004055 1.6e-27 125.9 95 74.7
ClCG09G003430 Citrullus lanatus HOM05D003613 ORTHO05D004055 1.6e-27 125.9 97 70.1
COL.COLO4_30901 Corchorus olitorius HOM05D003613 ORTHO05D004055 1.6e-27 125.9 97 67.0
Glyma.13G250700 Glycine max HOM05D003613 ORTHO05D004055 2.1e-27 125.6 97 69.1
Glyma.15G063700 Glycine max HOM05D003613 ORTHO05D004055 2.1e-27 125.6 97 69.1
TAR383G0763 Trochodendron aralioides HOM05D003613 ORTHO05D004055 2.1e-27 125.6 104 71.2
MD09G1229400 Malus domestica HOM05D003613 ORTHO05D004055 2.8e-27 125.2 97 71.1
Duzib192G0866 Durio zibethinus HOM05D003613 ORTHO05D004055 8.0e-27 123.6 97 68.0
QL12p003368 Quercus lobata HOM05D003613 ORTHO05D004055 1.1e-26 123.2 95 72.6
Sed0021976 Sechium edule HOM05D003613 ORTHO05D004055 1.4e-26 122.9 97 66.0
FAN02G4453 Fragaria x ananassa HOM05D003613 ORTHO05D004055 3.1e-26 121.7 93 68.8
MD17G1228300 Malus domestica HOM05D003613 ORTHO05D004055 4.0e-26 121.3 97 68.0
Duzib160G0323 Durio zibethinus HOM05D003613 ORTHO05D004055 6.8e-26 120.6 97 66.0
Glyma.01G154800 Glycine max HOM05D003613 ORTHO05D004055 1.5e-25 119.4 97 64.9
QL10p043081 Quercus lobata HOM05D003613 ORTHO05D004055 4.4e-25 117.9 95 70.5
Lalb_Chr19g0125611 Lupinus albus HOM05D003613 ORTHO05D004055 5.8e-25 117.5 97 64.9
TPR.G32634 Trifolium pratense HOM05D003613 ORTHO05D004055 5.8e-25 117.5 96 66.7
GSVIVG01016088001 Vitis vinifera HOM05D003613 ORTHO05D004055 5.8e-25 117.5 104 67.3
Aqoxy5G00706 Aquilegia oxysepala HOM05D003613 ORTHO05D004055 7.5e-25 117.1 101 63.4
AL1G28300 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 7.5e-25 117.1 96 62.5
Gohir.A10G049000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 1.3e-24 116.3 97 66.0
AT1G16170 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 1.7e-24 115.9 96 62.5
Glyma.15G176700 Glycine max HOM05D003613 ORTHO05D004055 1.7e-24 115.9 97 64.9
Ca_00210_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 2.2e-24 115.5 98 67.3
DCAR_025611 Daucus carota HOM05D003613 ORTHO05D004055 2.2e-24 115.5 103 63.1
Gohir.D10G049600 Gossypium hirsutum HOM05D003613 ORTHO05D004055 2.9e-24 115.2 97 64.9
Gorai.011G053100 Gossypium raimondii HOM05D003613 ORTHO05D004055 2.9e-24 115.2 97 64.9
MBI14_g16433_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 2.9e-24 115.2 107 61.7
Nitab4.5_0005437g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 3.7e-24 114.8 107 61.7
Lj6g0025627 Lotus japonicus HOM05D003613 ORTHO05D004055 4.9e-24 114.4 97 61.9
BcaB02g06598 Brassica carinata HOM05D003613 ORTHO05D004055 6.4e-24 114.0 96 59.4
Thhalv10009201m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 8.3e-24 113.6 96 62.5
Lalb_Chr16g0383261 Lupinus albus HOM05D003613 ORTHO05D004055 8.3e-24 113.6 94 63.8
Nn8g40130 Nelumbo nucifera HOM05D003613 ORTHO05D004055 1.1e-23 113.2 104 66.3
A06p12110 Brassica napus HOM05D003613 ORTHO05D004055 1.4e-23 112.8 96 60.4
BraA06t24380Z Brassica rapa HOM05D003613 ORTHO05D004055 1.4e-23 112.8 96 60.4
Sp1g14410 Schrenkiella parvula HOM05D003613 ORTHO05D004055 2.4e-23 112.1 96 61.5
CARHR016650 Cardamine hirsuta HOM05D003613 ORTHO05D004055 3.2e-23 111.7 96 62.5
SGA_v2.0_scaffold515G52657 Striga asiatica HOM05D003613 ORTHO05D004055 3.2e-23 111.7 107 62.6
Carub.0002s2654 Capsella rubella HOM05D003613 ORTHO05D004055 4.1e-23 111.3 97 62.9
FAN14G0884 Fragaria x ananassa HOM05D008004 ORTHO05D004055 7.1e-23 110.5 78 71.8
ECA246G2284 Erigeron canadensis HOM05D003613 ORTHO05D004055 1.2e-22 109.8 104 60.6
ECA247G1662 Erigeron canadensis HOM05D003613 ORTHO05D004055 1.2e-22 109.8 103 59.2
Medtr2g010880 Medicago truncatula HOM05D003613 ORTHO05D004055 1.2e-22 109.8 98 65.3
SGA_v2.0_scaffold74G24606 Striga asiatica HOM05D003613 ORTHO05D004055 1.2e-22 109.8 107 61.7
Oeu051549.1 Olea europaea HOM05D003613 ORTHO05D004055 1.6e-22 109.4 106 62.3
vmacro19080 Vaccinium macrocarpon HOM05D003613 ORTHO05D004055 1.6e-22 109.4 105 61.0
Actinidia36859 Actinidia chinensis HOM05D000338 ORTHO05D003721 2.1e-22 109.0 109 60.6
Aa31LG7G710 Aethionema arabicum HOM05D003613 ORTHO05D004055 2.1e-22 109.0 96 60.4
Carub.0001s1593 Capsella rubella HOM05D003613 ORTHO05D004055 2.1e-22 109.0 96 62.5
Sp5g34740 Schrenkiella parvula HOM05D003613 ORTHO05D004055 2.1e-22 109.0 97 61.9
THA.LOC104813597 Tarenaya hassleriana HOM05D003613 ORTHO05D004055 2.1e-22 109.0 97 64.9
Thhalv10019378m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 2.7e-22 108.6 97 60.8
HanXRQChr04g0100011 Helianthus annuus HOM05D003613 ORTHO05D004055 2.7e-22 108.6 104 61.5
Psat1g210880 Pisum sativum HOM05D003613 ORTHO05D004055 2.7e-22 108.6 99 63.6
Rhsim12G0183300 Rhododendron simsii HOM05D003613 ORTHO05D004055 3.5e-22 108.2 107 58.9
MSTRG.9389 Avicennia marina HOM05D003613 ORTHO05D004055 4.6e-22 107.8 106 59.4
BolC5t30160H Brassica oleracea HOM05D003613 ORTHO05D004055 6.0e-22 107.5 96 59.4
CSS0042010 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 6.0e-22 107.5 109 59.6
Cc04_g05380 Coffea canephora HOM05D003613 ORTHO05D004055 6.0e-22 107.5 104 58.7
Oeu033454.1 Olea europaea HOM05D003613 ORTHO05D004055 1.0e-21 106.7 107 57.9
AL2G40350 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 1.3e-21 106.3 97 60.8
CARHR073400 Cardamine hirsuta HOM05D003613 ORTHO05D004055 1.3e-21 106.3 96 63.5
HanXRQChr05g0157501 Helianthus annuus HOM05D003613 ORTHO05D004055 1.3e-21 106.3 104 59.6
Lalb_Chr20g0122601 Lupinus albus HOM05D003613 ORTHO05D004055 1.3e-21 106.3 97 60.8
AT1G79660 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 1.7e-21 105.9 97 60.8
MSTRG.11218 Avicennia marina HOM05D003613 ORTHO05D004055 1.7e-21 105.9 103 60.2
Lsat_1_v5_gn_5_9061 Lactuca sativa HOM05D003613 ORTHO05D004055 1.7e-21 105.9 104 60.6
ECA232G3259 Erigeron canadensis HOM05D003613 ORTHO05D004055 2.3e-21 105.5 95 58.9
SalBow1G4637 Salvia bowleyana HOM05D003613 ORTHO05D004055 2.3e-21 105.5 106 61.3
BcaB03g14503 Brassica carinata HOM05D003613 ORTHO05D004055 3.0e-21 105.1 97 58.8
C08p44600 Brassica napus HOM05D003613 ORTHO05D004055 3.0e-21 105.1 97 58.8
BolC8t52006H Brassica oleracea HOM05D003613 ORTHO05D004055 3.0e-21 105.1 97 58.8
Potri.001G039700 Populus trichocarpa HOM05D003613 ORTHO05D004055 3.0e-21 105.1 87 69.0
MSTRG.22838 Avicennia marina HOM05D003613 ORTHO05D004055 3.9e-21 104.8 106 57.5
BcaC05g25604 Brassica carinata HOM05D003613 ORTHO05D004055 3.9e-21 104.8 96 58.3
Aa31LG4G1310 Aethionema arabicum HOM05D003613 ORTHO05D004055 5.1e-21 104.4 86 66.3
C05p14290 Brassica napus HOM05D003613 ORTHO05D004055 5.1e-21 104.4 96 58.3
Nn2g12477 Nelumbo nucifera HOM05D003613 ORTHO05D004055 5.1e-21 104.4 105 61.9
A09p61000 Brassica napus HOM05D003613 ORTHO05D004055 6.6e-21 104.0 97 57.7
BraA09t41473Z Brassica rapa HOM05D003613 ORTHO05D004055 6.6e-21 104.0 97 57.7
FvH4_6g28090 Fragaria vesca HOM05D008004 ORTHO05D011218 1.1e-20 103.2 73 72.6
BcaC07g38803 Brassica carinata HOM05D003613 ORTHO05D004055 1.5e-20 102.8 96 59.4
C08p17390 Brassica napus HOM05D003613 ORTHO05D004055 1.5e-20 102.8 96 59.4
BolC8t49365H Brassica oleracea HOM05D003613 ORTHO05D004055 1.5e-20 102.8 96 59.4
Migut.D01149 Erythranthe guttata HOM05D003613 ORTHO05D004055 1.5e-20 102.8 108 55.6
MBI15_g26076_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 1.9e-20 102.4 105 56.2
Rhsim08G0202400 Rhododendron simsii HOM05D003613 ORTHO05D004055 1.9e-20 102.4 105 56.2
Solyc12g042540.1 Solanum lycopersicum HOM05D003613 ORTHO05D004055 2.5e-20 102.1 107 58.9
Sopen03g036670 Solanum pennellii HOM05D003613 ORTHO05D004055 3.3e-20 101.7 107 57.9
Sopen12g021630 Solanum pennellii HOM05D003613 ORTHO05D004055 3.3e-20 101.7 107 58.9
CAN.G1008.14 Capsicum annuum HOM05D003613 ORTHO05D004055 4.3e-20 101.3 107 56.1
PGSC0003DMG400014217 Solanum tuberosum HOM05D003613 ORTHO05D004055 4.3e-20 101.3 107 57.0
arahy.Tifrunner.gnm1.ann1.T22GZM Arachis hypogaea HOM05D003613 ORTHO05D004055 7.3e-20 100.5 82 63.4
Phvul.002G218400 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 9.5e-20 100.1 94 57.4
PGSC0003DMG400014438 Solanum tuberosum HOM05D003613 ORTHO05D004055 9.5e-20 100.1 107 58.9
BcaB03g13047 Brassica carinata HOM05D003613 ORTHO05D004055 1.2e-19 99.8 96 58.3
ATR0580G444 Amborella trichopoda HOM05D003613 ORTHO05D004055 1.6e-19 99.4 105 53.3
Glyma.07G187000 Glycine max HOM05D003613 ORTHO05D004055 1.6e-19 99.4 94 61.7
Lsat_1_v5_gn_4_84900 Lactuca sativa HOM05D003613 ORTHO05D004055 1.6e-19 99.4 101 57.4
Os08g0266200 Oryza sativa ssp. japonica HOM05D003613 ORTHO05D004055 1.6e-19 99.4 103 57.3
SHI11349 Sapria himalayana HOM05D003613 ORTHO05D004055 2.1e-19 99.0 85 64.7
BcaC08g47524 Brassica carinata HOM05D003613 ORTHO05D004055 2.8e-19 98.6 98 56.1
A08p31400 Brassica napus HOM05D003613 ORTHO05D004055 2.8e-19 98.6 96 57.3
BraA08t35063Z Brassica rapa HOM05D003613 ORTHO05D004055 2.8e-19 98.6 96 57.3
BcaC08g47525 Brassica carinata HOM05D003613 ORTHO05D004055 3.6e-19 98.2 98 58.2
BolC6t40365H Brassica oleracea HOM05D003613 ORTHO05D004055 3.6e-19 98.2 98 58.2
Glyma.08G062200 Glycine max HOM05D003613 ORTHO05D004055 6.2e-19 97.4 96 60.4
arahy.Tifrunner.gnm1.ann1.XPM13Z Arachis hypogaea HOM05D003613 ORTHO05D004055 8.1e-19 97.1 76 63.2
Migut.I00632 Erythranthe guttata HOM05D003613 ORTHO05D004055 8.1e-19 97.1 108 54.6
ATR0068G040 Amborella trichopoda HOM05D003613 ORTHO05D004055 1.1e-18 96.7 105 52.4
A07p44660 Brassica napus HOM05D003613 ORTHO05D004055 1.1e-18 96.7 98 57.1
BraA07t31975Z Brassica rapa HOM05D003613 ORTHO05D004055 1.1e-18 96.7 98 57.1
Lalb_Chr09g0327111 Lupinus albus HOM05D003613 ORTHO05D004055 1.1e-18 96.7 95 56.8
SEGI_37804 Sequoiadendron giganteum HOM05D003613 ORTHO05D004055 1.4e-18 96.3 100 56.0
unitig_22.g6276 Utricularia gibba HOM05D003613 ORTHO05D004055 2.3e-18 95.5 106 52.8
arahy.Tifrunner.gnm1.ann1.DB50AT Arachis hypogaea HOM05D003613 ORTHO05D004055 4.0e-18 94.7 85 62.4
EL10Ac5g12047 Beta vulgaris HOM05D003613 ORTHO05D004055 5.2e-18 94.4 101 56.4
Nitab4.5_0002700g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 8.9e-18 93.6 81 65.4
TAR626G0045 Trochodendron aralioides HOM05D003147 ORTHO05D004055 2.0e-17 92.4 76 72.4
unitig_8.g3041 Utricularia gibba HOM05D003613 ORTHO05D004055 2.6e-17 92.0 106 50.0
BcaC03g14996 Brassica carinata HOM05D003613 ORTHO05D004055 3.4e-17 91.7 80 61.2
BolC2t08604H Brassica oleracea HOM05D003613 ORTHO05D004055 3.4e-17 91.7 80 61.2
C02p25300 Brassica napus HOM05D003613 ORTHO05D004055 4.4e-17 91.3 80 61.2
arahy.Tifrunner.gnm1.ann1.M9YY7V Arachis hypogaea HOM05D003613 ORTHO05D004055 5.8e-17 90.9 85 60.0
Ca_18450_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 5.8e-17 90.9 96 52.1
Gohir.D09G076100 Gossypium hirsutum HOM05D003613 ORTHO05D004055 9.9e-17 90.1 97 52.6
Gorai.006G091300 Gossypium raimondii HOM05D003613 ORTHO05D004055 2.2e-16 89.0 97 52.6
Peaxi162Scf00195g00118 Petunia axillaris HOM05D003613 ORTHO05D004055 2.2e-16 89.0 82 64.6
DCAR_021377 Daucus carota HOM05D003613 ORTHO05D004055 2.9e-16 88.6 102 54.9
AUR62018676 Chenopodium quinoa HOM05D003613 ORTHO05D004055 8.3e-16 87.0 103 51.5
Lj4g0025384 Lotus japonicus HOM05D003613 ORTHO05D004055 1.1e-15 86.7 98 55.1
BcaC03g17203 Brassica carinata HOM05D003613 ORTHO05D004055 1.4e-15 86.3 78 60.3
BolC2t11219H Brassica oleracea HOM05D003613 ORTHO05D004055 1.4e-15 86.3 78 60.3
BolC8t51544H Brassica oleracea HOM05D003613 ORTHO05D004055 1.4e-15 86.3 76 61.8
C08p39730 Brassica napus HOM05D003613 ORTHO05D004055 2.4e-15 85.5 78 59.0
Gohir.A09G076160 Gossypium hirsutum HOM05D003613 ORTHO05D004055 2.4e-15 85.5 97 51.5
Ah.12g055300 Amaranthus hybridus HOM05D003613 ORTHO05D004055 5.4e-15 84.3 105 51.4
Zm00001eb177920 Zea mays HOM05D003613 ORTHO05D004055 5.4e-15 84.3 101 51.5
TPR.G13916 Trifolium pratense HOM05D003613 ORTHO05D004055 1.6e-14 82.8 81 50.6
Zm00001eb412000 Zea mays HOM05D003613 ORTHO05D004055 2.1e-14 82.4 102 53.9
CSS0016880 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 3.0e-13 78.6 82 58.5
arahy.Tifrunner.gnm1.ann1.LI0G0T Arachis hypogaea HOM05D003613 ORTHO05D004055 8.6e-13 77.0 84 52.4
Pp3c14_25540 Physcomitrium patens HOM05D003613 ORTHO05D004055 4.4e-09 64.7 86 48.8
Pp3c10_10840 Physcomitrium patens HOM05D003613 ORTHO05D004055 9.9e-09 63.5 81 46.9
DCAR_021376 Daucus carota HOM05D003613 ORTHO05D004055 1.3e-08 63.2 68 55.9
SMO307G0037 Selaginella moellendorffii HOM05D000818 ORTHO05D004055 2.2e-08 62.4 74 51.4
SMO001G0027 Selaginella moellendorffii HOM05D003613 ORTHO05D004055 3.8e-08 61.6 74 51.4
AagrBONN_evm.TU.Sc2ySwM_368.2820 Anthoceros agrestis HOM05D003613 ORTHO05D004055 1.1e-07 60.1 53 56.6
Mapoly0033s0168 Marchantia polymorpha HOM05D000087 ORTHO05D255883 3.2e-07 58.5 61 54.1
Nitab4.5_0002302g0110 Nicotiana tabacum HOM05D003613 ORTHO05D004055 9.3e-07 57.0 62 56.5


User provided reference genes

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