Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 1.4e-119 433.0 224 100.0
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 1.1e-74 283.9 232 69.4
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 2.1e-49 199.9 201 59.7
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 6.6e-48 194.9 201 58.2
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 1.1e-42 177.6 203 53.7
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 1.4e-42 177.2 194 54.1
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 6.6e-40 168.3 220 51.4
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 1.5e-39 167.2 203 48.8
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 6.2e-38 161.8 204 46.6
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 8.1e-38 161.4 189 53.4
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 8.1e-38 161.4 217 46.1
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 8.1e-38 161.4 199 48.7
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.4e-37 160.6 192 50.0
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.8e-37 160.2 204 50.5
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 2.4e-37 159.8 194 49.5
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 3.1e-37 159.5 210 47.6
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 3.1e-37 159.5 204 48.0
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 4.0e-37 159.1 190 48.9
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 4.0e-37 159.1 212 45.8
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 4.0e-37 159.1 192 53.1
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 5.3e-37 158.7 208 50.0
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 5.3e-37 158.7 191 47.1
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 6.9e-37 158.3 191 47.1
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 6.9e-37 158.3 204 47.1
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 1.2e-36 157.5 203 48.3
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 1.5e-36 157.1 190 47.4
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 2.0e-36 156.8 195 50.3
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.0e-36 156.8 205 51.7
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 4.5e-36 155.6 192 46.4
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 5.8e-36 155.2 225 49.3
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 7.6e-36 154.8 193 45.6
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 7.6e-36 154.8 189 48.7
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 1.3e-35 154.1 213 48.4
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.7e-35 153.7 192 45.8
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 2.9e-35 152.9 198 47.0
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 3.8e-35 152.5 191 49.7
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.1e-34 151.0 192 45.3
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 1.4e-34 150.6 202 48.5
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 2.4e-34 149.8 190 47.4
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 2.4e-34 149.8 192 48.4
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 7.1e-34 148.3 193 44.6
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 7.1e-34 148.3 197 47.7
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 9.3e-34 147.9 227 48.9
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 1.6e-33 147.1 202 48.5
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 1.6e-33 147.1 214 42.1
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 2.1e-33 146.7 204 44.1
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 3.0e-32 142.9 201 44.3
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 3.0e-32 142.9 195 45.1
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 5.1e-32 142.1 206 46.1
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 8.7e-32 141.4 192 44.3
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 1.5e-31 140.6 211 41.2
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.9e-31 140.2 195 45.1
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 3.3e-31 139.4 203 43.3
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 7.4e-31 138.3 192 45.3
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 7.4e-31 138.3 207 42.5
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 1.3e-30 137.5 204 43.1
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 1.3e-30 137.5 197 43.1
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 1.6e-30 137.1 191 42.9
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 1.6e-30 137.1 196 45.4
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 1.1e-29 134.4 196 43.4
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.8e-29 133.7 196 43.4
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 2.4e-29 133.3 188 43.1
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 3.1e-29 132.9 188 43.6
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 6.9e-29 131.7 188 42.6
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 6.9e-29 131.7 192 42.2
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 9.0e-29 131.3 192 43.2
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 9.0e-29 131.3 195 41.0
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 9.0e-29 131.3 208 41.8
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 1.2e-28 131.0 192 43.8
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 2.6e-28 129.8 192 43.8
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 2.6e-28 129.8 192 42.7
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 2.6e-28 129.8 242 36.8
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 3.4e-28 129.4 206 43.2
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 4.5e-28 129.0 192 42.7
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 4.5e-28 129.0 192 42.7
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 4.5e-28 129.0 192 42.7
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 5.8e-28 128.6 205 42.0
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 1.3e-27 127.5 192 43.8
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 1.7e-27 127.1 192 41.1
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 1.7e-27 127.1 187 46.0
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 2.9e-27 126.3 234 41.9
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 3.8e-27 125.9 201 43.8
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 3.8e-27 125.9 194 41.2
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 3.8e-27 125.9 203 45.3
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 8.4e-27 124.8 195 42.1
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.1e-26 124.4 195 44.1
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.1e-26 124.4 195 44.1
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.1e-26 124.4 195 44.1
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 2.5e-26 123.2 193 45.1
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 2.5e-26 123.2 242 37.6
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 3.2e-26 122.9 201 39.8
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 3.2e-26 122.9 204 39.7
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 4.2e-26 122.5 205 40.0
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 4.2e-26 122.5 188 41.0
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 4.2e-26 122.5 192 41.7
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 4.2e-26 122.5 204 41.7
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 4.2e-26 122.5 195 41.5
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 5.5e-26 122.1 193 44.0
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 5.5e-26 122.1 193 38.9
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 5.5e-26 122.1 195 43.1
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 2.1e-25 120.2 196 43.4
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 2.1e-25 120.2 202 42.6
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 2.7e-25 119.8 192 42.2
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 2.7e-25 119.8 201 42.8
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 3.5e-25 119.4 199 43.2
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 4.6e-25 119.0 188 42.0
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 4.6e-25 119.0 200 40.5
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 7.9e-25 118.2 188 41.0
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 7.9e-25 118.2 195 43.6
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 1.3e-24 117.5 204 40.7
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 1.8e-24 117.1 193 44.0
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 1.8e-24 117.1 193 43.5
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 1.8e-24 117.1 195 42.6
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 2.3e-24 116.7 190 44.7
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 2.3e-24 116.7 201 41.8
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 3.0e-24 116.3 193 43.5
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 3.0e-24 116.3 193 43.5
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 3.0e-24 116.3 193 43.5
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 6.7e-24 115.2 183 42.1
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.5e-23 114.0 204 42.2
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.5e-23 114.0 195 40.5
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 1.9e-23 113.6 195 40.5
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 2.5e-23 113.2 193 42.0
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 5.7e-23 112.1 192 41.7
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 9.6e-23 111.3 187 39.0
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 1.3e-22 110.9 196 38.8
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 2.1e-22 110.2 181 40.9
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 3.7e-22 109.4 203 38.4
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 6.3e-22 108.6 201 40.3
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 6.3e-22 108.6 189 38.1
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 8.2e-22 108.2 169 39.6
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 4.1e-21 105.9 207 36.7
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 5.3e-21 105.5 195 39.5
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 1.5e-20 104.0 162 40.7
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 1.5e-20 104.0 163 42.3
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 2.6e-20 103.2 219 34.7
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 3.4e-20 102.8 199 42.7
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 3.4e-20 102.8 163 43.6
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 4.5e-20 102.4 181 42.0
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 4.5e-20 102.4 181 42.0
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 4.5e-20 102.4 193 40.4
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 5.9e-20 102.1 125 47.2
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 1.7e-19 100.5 193 40.9
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 1.7e-19 100.5 193 40.9
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 2.9e-19 99.8 187 36.4
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 8.5e-19 98.2 203 36.0
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 1.1e-18 97.8 177 37.3
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 2.5e-18 96.7 177 37.3
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 4.2e-18 95.9 181 39.8
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 3.6e-17 92.8 196 36.2
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 3.0e-16 89.7 197 41.6
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 3.0e-16 89.7 157 39.5
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.9e-15 87.0 131 40.5
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 4.3e-15 85.9 214 37.4
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 5.7e-15 85.5 222 33.3
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 7.4e-15 85.1 76 56.6
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 2.8e-14 83.2 190 31.6
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 1.1e-13 81.3 208 29.8
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 1.4e-13 80.9 194 32.5
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 1.8e-13 80.5 191 31.9
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 2.4e-13 80.1 190 32.1
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 2.4e-13 80.1 90 52.2
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 2.4e-13 80.1 101 45.5
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 4.5e-12 75.9 192 38.0
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 8.5e-11 71.6 192 34.9
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 5.5e-10 68.9 193 30.1
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 4.6e-09 65.9 190 32.6
Ah.02g128730 Amaranthus hybridus HOM05D029470 ORTHO05D026515 1.0e-08 64.7 180 33.9
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 6.7e-08 62.0 99 39.4
Oeu062519.1 Olea europaea HOM05D051843 ORTHO05D004573 2.0e-07 60.5 186 33.3
EL10Ac6g13908 Beta vulgaris HOM05D029470 ORTHO05D026515 2.6e-07 60.1 197 29.9
Zm00001eb318100 Zea mays HOM05D015480 ORTHO05D019326 3.3e-07 59.7 196 28.1
Oeu035281.1 Olea europaea HOM05D004039 ORTHO05D004573 4.4e-07 59.3 168 33.9
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 1.3e-06 57.8 186 31.2
THA.LOC104823341 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 6.3e-06 55.5 195 31.3


User provided reference genes

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