Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G092600 Manihot esculenta HOM05D005729 ORTHO05D007026 3.5e-98 361.7 194 100.0
PGR142G3540 Punica granatum HOM05D005729 ORTHO05D007026 4.2e-67 258.5 194 74.7
Potri.014G145600 Populus trichocarpa HOM05D005729 ORTHO05D007026 4.7e-66 255.0 194 75.3
CANSAT64G2014 Cannabis sativa HOM05D005729 ORTHO05D007026 6.8e-65 251.1 194 73.2
Cpa.g.sc9.286 Carica papaya HOM05D005729 ORTHO05D007026 4.4e-64 248.4 200 71.5
ClCG01G007820 Citrullus lanatus HOM05D005729 ORTHO05D007026 7.5e-64 247.7 190 72.1
Prupe.2G125900 Prunus persica HOM05D005729 ORTHO05D007026 6.3e-63 244.6 193 73.6
Sed0006238 Sechium edule HOM05D005729 ORTHO05D007026 9.1e-62 240.7 190 71.6
MD00G1041400 Malus domestica HOM05D005729 ORTHO05D007026 2.0e-61 239.6 199 69.8
Glyma.19G102200 Glycine max HOM05D005729 ORTHO05D007026 2.7e-61 239.2 190 72.6
Actinidia19554 Actinidia chinensis HOM05D005729 ORTHO05D007026 7.7e-61 237.7 202 67.8
MELO3C005111.2 Cucumis melo HOM05D005729 ORTHO05D007026 7.7e-61 237.7 192 71.9
FAN17G0918 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.0e-60 237.3 192 69.3
FAN22G1114 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.3e-60 236.9 192 69.3
MD05G1139400 Malus domestica HOM05D005729 ORTHO05D007026 1.3e-60 236.9 200 70.0
FvH4_4g34010 Fragaria vesca HOM05D005729 ORTHO05D007026 1.1e-59 233.8 192 68.2
Glyma.16G049200 Glycine max HOM05D005729 ORTHO05D007026 1.1e-59 233.8 193 69.9
CsaV3_5G024890 Cucumis sativus L. HOM05D005729 ORTHO05D007026 2.5e-59 232.6 192 70.8
Sed0018343 Sechium edule HOM05D005729 ORTHO05D007026 3.2e-59 232.3 183 71.0
FAN12G1178 Fragaria x ananassa HOM05D005729 ORTHO05D007026 5.5e-59 231.5 192 67.7
Phvul.001G085400 Phaseolus vulgaris HOM05D005729 ORTHO05D007026 5.5e-59 231.5 191 68.1
Duzib187G1006 Durio zibethinus HOM05D005729 ORTHO05D007026 9.4e-59 230.7 191 68.6
Thecc.04G047000 Theobroma cacao HOM05D005729 ORTHO05D007026 1.2e-58 230.3 194 67.5
Potri.002G237000 Populus trichocarpa HOM05D005729 ORTHO05D007026 2.1e-58 229.6 198 68.7
Lalb_Chr22g0359961 Lupinus albus HOM05D005729 ORTHO05D007026 2.7e-58 229.2 195 68.2
Dinv33283 Davidia involucrata HOM05D005729 ORTHO05D007026 1.4e-57 226.9 200 65.5
RcHm_v2.0_Chr5g0049531 Rosa chinensis HOM05D005729 ORTHO05D007026 4.0e-57 225.3 192 65.1
CiPaw.03G002600 Carya illinoinensis HOM05D005729 ORTHO05D007026 5.2e-57 224.9 190 69.5
FAN21G1155 Fragaria x ananassa HOM05D005729 ORTHO05D007026 5.7e-56 221.5 192 65.6
FAN25G1272 Fragaria x ananassa HOM05D005729 ORTHO05D007026 9.8e-56 220.7 192 66.7
SalBow7G1413 Salvia bowleyana HOM05D005729 ORTHO05D007026 9.8e-56 220.7 194 68.6
arahy.Tifrunner.gnm1.ann1.33W0XH Arachis hypogaea HOM05D005729 ORTHO05D007026 1.3e-55 220.3 197 64.5
TPR.G10334 Trifolium pratense HOM05D005729 ORTHO05D007026 6.3e-55 218.0 188 67.6
Thhalv10017252m.g Eutrema salsugineum HOM05D005729 ORTHO05D007026 8.3e-55 217.6 202 63.9
Nn4g22156 Nelumbo nucifera HOM05D005729 ORTHO05D007026 8.3e-55 217.6 181 69.1
THA.LOC104815860 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 1.6e-53 213.4 199 63.8
TAR371G0439 Trochodendron aralioides HOM05D005729 ORTHO05D007026 7.7e-53 211.1 189 64.0
CSS0020873 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 1.3e-52 210.3 207 61.4
Medtr7g083930 Medicago truncatula HOM05D005729 ORTHO05D007026 2.3e-52 209.5 193 63.7
Eucgr.G01937 Eucalyptus grandis HOM05D005729 ORTHO05D007026 3.8e-52 208.8 192 64.6
Solyc02g094490.4 Solanum lycopersicum HOM05D005729 ORTHO05D007026 6.6e-52 208.0 191 62.8
Oeu003419.1 Olea europaea HOM05D005729 ORTHO05D007026 1.1e-51 207.2 202 61.4
Aqoxy5G03273 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 1.5e-51 206.8 191 60.7
CARHR125040 Cardamine hirsuta HOM05D005729 ORTHO05D007026 4.3e-51 205.3 202 61.4
QL11p027744 Quercus lobata HOM05D005729 ORTHO05D007026 4.3e-51 205.3 194 64.4
Gohir.D07G239700 Gossypium hirsutum HOM05D005729 ORTHO05D007026 2.1e-50 203.0 192 63.0
EL10As7g23751 Beta vulgaris HOM05D005729 ORTHO05D007026 3.6e-50 202.2 189 63.0
TWI34G0826 Tripterygium wilfordii HOM05D005729 ORTHO05D007026 4.7e-50 201.8 198 63.6
EL10Ac6g13393 Beta vulgaris HOM05D005729 ORTHO05D007026 1.0e-49 200.7 188 62.2
Ciclev10016760m.g Citrus clementina HOM05D005729 ORTHO05D007026 1.4e-49 200.3 199 59.8
unitig_92.g28207 Utricularia gibba HOM05D005729 ORTHO05D007026 1.4e-49 200.3 199 60.8
Sp4g13900 Schrenkiella parvula HOM05D005729 ORTHO05D007026 2.3e-49 199.5 203 61.6
Lj1g0015500 Lotus japonicus HOM05D005729 ORTHO05D007026 4.0e-49 198.7 190 62.1
Zm00001eb183750 Zea mays HOM05D005729 ORTHO05D007026 4.0e-49 198.7 190 60.0
ATR0559G324 Amborella trichopoda HOM05D005729 ORTHO05D007026 5.2e-49 198.4 199 58.8
Peaxi162Scf00420g00083 Petunia axillaris HOM05D005729 ORTHO05D007026 5.2e-49 198.4 193 60.1
Aqoxy5G03167 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 6.8e-49 198.0 190 60.0
MBI07_g07331_MAGBIO Magnolia biondii HOM05D005729 ORTHO05D007026 1.2e-48 197.2 188 59.6
SGA_v2.0_scaffold47G17637 Striga asiatica HOM05D005729 ORTHO05D007026 1.5e-48 196.8 199 60.3
Lsat_1_v5_gn_2_94961 Lactuca sativa HOM05D005729 ORTHO05D007026 2.0e-48 196.4 187 62.0
RcHm_v2.0_Chr6g0252241 Rosa chinensis HOM05D005729 ORTHO05D007026 2.0e-48 196.4 162 69.8
Ah.02g128910 Amaranthus hybridus HOM05D005729 ORTHO05D007026 2.6e-48 196.1 188 62.2
Aa31LG5G5560 Aethionema arabicum HOM05D005729 ORTHO05D007026 4.4e-48 195.3 198 60.6
Dinv25620 Davidia involucrata HOM05D000884 ORTHO05D002127 7.5e-48 194.5 188 63.3
THA.LOC104826200 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 7.5e-48 194.5 188 64.4
BcaC02g07982 Brassica carinata HOM05D005729 ORTHO05D007026 1.3e-47 193.7 198 59.1
C04p61110 Brassica napus HOM05D005729 ORTHO05D007026 1.3e-47 193.7 198 59.1
BolC4t27596H Brassica oleracea HOM05D005729 ORTHO05D007026 1.3e-47 193.7 198 59.1
DCAR_014472 Daucus carota HOM05D005729 ORTHO05D007026 1.3e-47 193.7 196 59.7
HanXRQChr14g0451391 Helianthus annuus HOM05D005729 ORTHO05D007026 1.3e-47 193.7 191 60.2
Duzib264G0852 Durio zibethinus HOM05D005729 ORTHO05D007026 1.7e-47 193.4 201 60.7
Gorai.001G275800 Gossypium raimondii HOM05D005729 ORTHO05D007026 1.7e-47 193.4 192 60.9
Psat3g093680 Pisum sativum HOM05D005729 ORTHO05D007026 1.7e-47 193.4 191 61.8
CAN.G473.157 Capsicum annuum HOM05D005729 ORTHO05D007026 2.2e-47 193.0 188 61.2
A04p24280 Brassica napus HOM05D005729 ORTHO05D007026 1.8e-46 189.9 192 58.9
BraA04t17947Z Brassica rapa HOM05D005729 ORTHO05D007026 1.8e-46 189.9 192 58.9
TAR629G2671 Trochodendron aralioides HOM05D005729 ORTHO05D007026 1.8e-46 189.9 190 58.9
RcHm_v2.0_Chr2g0115461 Rosa chinensis HOM05D005729 ORTHO05D007026 7.0e-46 188.0 162 66.7
PGSC0003DMG400035897 Solanum tuberosum HOM05D005729 ORTHO05D007026 7.0e-46 188.0 197 58.4
RcHm_v2.0_Chr7g0240621 Rosa chinensis HOM05D005729 ORTHO05D007026 3.5e-45 185.7 162 66.7
TAR628G1373 Trochodendron aralioides HOM05D005729 ORTHO05D007026 5.9e-45 184.9 190 57.9
BcaB01g04046 Brassica carinata HOM05D005729 ORTHO05D007026 7.8e-45 184.5 200 57.0
Ca_08134_v3 Cicer arietinum L. HOM05D005729 ORTHO05D007026 2.3e-44 183.0 190 59.5
BraA03t11026Z Brassica rapa HOM05D005729 ORTHO05D007026 3.0e-44 182.6 192 57.3
Cfa007167 Carpinus fangiana HOM05D005729 ORTHO05D007026 3.9e-44 182.2 197 59.9
Sopen02g039170 Solanum pennellii HOM05D005729 ORTHO05D007026 3.9e-44 182.2 192 57.3
Cfa016824 Carpinus fangiana HOM05D005729 ORTHO05D007026 5.0e-44 181.8 195 60.0
AL4G26660 Arabidopsis lyrata HOM05D005729 ORTHO05D007026 8.6e-44 181.0 196 56.6
Migut.K01484 Erythranthe guttata HOM05D005729 ORTHO05D007026 8.6e-44 181.0 186 61.3
Sc07g0003710 Simmondsia chinensis HOM05D005729 ORTHO05D007026 1.9e-43 179.9 188 59.0
Carub.0004s1273 Capsella rubella HOM05D005729 ORTHO05D007026 2.5e-43 179.5 196 56.1
Haze_19869 Corylus avellana HOM05D005729 ORTHO05D007026 3.3e-43 179.1 195 59.0
Gohir.A07G232500 Gossypium hirsutum HOM05D005729 ORTHO05D007026 3.3e-43 179.1 192 57.8
A03p17590 Brassica napus HOM05D005729 ORTHO05D007026 4.3e-43 178.7 187 57.2
Zm00001eb246070 Zea mays HOM05D005729 ORTHO05D007026 1.6e-42 176.8 191 55.5
Haze_14943 Corylus avellana HOM05D005729 ORTHO05D007026 2.1e-42 176.4 195 59.0
AT2G31410 Arabidopsis thaliana HOM05D005729 ORTHO05D007026 4.7e-42 175.3 197 54.8
C03p20700 Brassica napus HOM05D005729 ORTHO05D007026 6.2e-42 174.9 186 56.5
BolC3t14453H Brassica oleracea HOM05D005729 ORTHO05D007026 6.2e-42 174.9 186 56.5
Nitab4.5_0002172g0090 Nicotiana tabacum HOM05D005729 ORTHO05D007026 6.2e-42 174.9 195 55.4
Lju41C60T1 Lonicera japonica HOM05D005729 ORTHO05D007026 1.0e-41 174.1 203 55.7
ECA238G1999 Erigeron canadensis HOM05D005729 ORTHO05D007026 2.3e-41 172.9 191 57.1
PSO478G2072 Papaver somniferum HOM05D005729 ORTHO05D007026 2.3e-41 172.9 186 56.5
Atru.chr6.2652 Acer truncatum HOM05D005729 ORTHO05D007026 4.0e-41 172.2 194 55.2
AUR62036639 Chenopodium quinoa HOM05D005729 ORTHO05D007026 4.0e-41 172.2 196 55.1
HPP92_011631 Vanilla planifolia HOM05D005729 ORTHO05D007026 1.7e-39 166.8 197 55.8
CSS0008758 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 1.9e-38 163.3 135 70.4
Sabra02G0180500 Salix brachista HOM05D005729 ORTHO05D007026 7.0e-38 161.4 181 54.7
RcHm_v2.0_Chr5g0057561 Rosa chinensis HOM05D005729 ORTHO05D007026 2.0e-37 159.8 153 61.4
Rhsim08G0039300 Rhododendron simsii HOM05D005729 ORTHO05D007026 6.0e-37 158.3 141 63.8
CSS0019060 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 3.0e-36 156.0 148 64.9
RcHm_v2.0_Chr5g0026441 Rosa chinensis HOM05D005729 ORTHO05D007026 1.1e-35 154.1 130 66.2
Pp3c11_25830 Physcomitrium patens HOM05D005729 ORTHO05D007026 5.6e-35 151.8 181 51.9
RcHm_v2.0_Chr6g0272931 Rosa chinensis HOM05D005729 ORTHO05D007026 9.5e-35 151.0 134 64.9
Os02g0595400 Oryza sativa ssp. japonica HOM05D005729 ORTHO05D007026 8.1e-34 147.9 190 50.0
RcHm_v2.0_Chr2g0117931 Rosa chinensis HOM05D005729 ORTHO05D007026 8.1e-34 147.9 149 59.7
RcHm_v2.0_Chr1g0315821 Rosa chinensis HOM05D005729 ORTHO05D007026 4.0e-33 145.6 149 59.7
AUR62034632 Chenopodium quinoa HOM05D000604 ORTHO05D004512 2.9e-31 139.4 145 57.2
PSO017G0758 Papaver somniferum HOM05D005729 ORTHO05D007026 2.9e-31 139.4 186 48.4
Nitab4.5_0000519g0260 Nicotiana tabacum HOM05D005729 ORTHO05D007026 2.4e-30 136.3 157 56.1
CDE06G2057 Ceratophyllum demersum HOM05D005729 ORTHO05D007026 1.6e-29 133.7 117 59.8
Cc07_g01230 Coffea canephora HOM05D005729 ORTHO05D007026 2.1e-29 133.3 202 49.5
COL.COLO4_13365 Corchorus olitorius HOM05D005729 ORTHO05D007026 1.7e-28 130.2 115 63.5
RcHm_v2.0_Chr6g0295141 Rosa chinensis HOM05D005729 ORTHO05D007026 1.1e-25 120.9 118 61.0
Haze_19868 Corylus avellana HOM05D005729 ORTHO05D007026 2.6e-24 116.3 95 67.4
Sc14g0008230 Simmondsia chinensis HOM05D005729 ORTHO05D007026 3.5e-21 105.9 142 50.7
Mapoly0127s0012 Marchantia polymorpha HOM05D005729 ORTHO05D007026 3.9e-20 102.4 184 42.9
Solyc03g083260.1 Solanum lycopersicum HOM05D005729 ORTHO05D007026 1.1e-17 94.4 83 57.8
Hma1.2p1_0033F.1_g021130 Hydrangea macrophylla HOM05D005729 ORTHO05D007026 2.6e-16 89.7 105 54.3
Psat4g074560 Pisum sativum HOM05D005729 ORTHO05D007026 9.9e-16 87.8 125 45.6
EL10Ac1g01380 Beta vulgaris HOM05D005729 ORTHO05D007026 4.9e-15 85.5 65 66.2
Psat4g074600 Pisum sativum HOM05D005729 ORTHO05D007026 5.4e-14 82.0 124 47.6
FvH4_3g27021 Fragaria vesca HOM05D005729 ORTHO05D007026 9.6e-11 71.2 73 60.3
Atru.chr5.655 Acer truncatum HOM05D000598 ORTHO05D000480 1.6e-10 70.5 134 42.5
Atru.chr6.2684 Acer truncatum HOM05D005729 ORTHO05D007026 4.0e-09 65.9 59 62.7
Lalb_Chr14g0364061 Lupinus albus HOM05D005729 ORTHO05D007026 6.9e-09 65.1 61 67.2
CBR_g4589 Chara braunii HOM05D005729 ORTHO05D007026 5.8e-08 62.0 174 36.2


User provided reference genes

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