Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 1.6e-231 805.8 426 100.0
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 3.0e-182 642.1 427 82.0
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 1.3e-156 557.0 441 70.1
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 2.8e-156 555.8 432 70.8
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 6.3e-156 554.7 443 69.1
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 2.4e-155 552.7 394 74.1
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 7.7e-154 547.7 404 69.1
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 1.3e-153 547.0 399 73.4
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 7.2e-152 541.2 404 69.3
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 3.6e-151 538.9 438 70.3
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 3.6e-151 538.9 391 70.8
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 1.0e-150 537.3 387 70.8
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 3.9e-150 535.4 400 70.0
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 1.7e-148 530.0 443 67.7
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 4.8e-148 528.5 438 64.8
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 2.4e-147 526.2 439 68.8
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 9.1e-147 524.2 399 66.9
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 1.5e-146 523.5 439 63.3
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 2.6e-146 522.7 441 68.7
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 1.0e-145 520.8 398 70.4
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 1.0e-145 520.8 443 67.5
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 2.2e-145 519.6 404 66.1
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 2.2e-145 519.6 438 65.1
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 5.0e-145 518.5 439 67.2
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 1.1e-144 517.3 445 66.3
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 3.2e-144 515.8 441 64.4
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 7.2e-144 514.6 395 70.1
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 2.1e-143 513.1 395 68.4
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 4.7e-143 511.9 399 65.7
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 6.1e-143 511.5 398 65.6
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 8.0e-143 511.1 443 66.1
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 1.4e-142 510.4 439 65.8
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 1.4e-142 510.4 440 65.9
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 2.3e-142 509.6 444 67.6
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 6.7e-142 508.1 394 68.3
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 8.8e-142 507.7 444 66.7
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 1.1e-141 507.3 392 69.4
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.1e-141 507.3 404 66.3
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 1.5e-141 506.9 441 62.8
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 4.4e-141 505.4 407 65.8
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 4.4e-141 505.4 395 67.1
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 5.7e-141 505.0 433 67.7
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 1.7e-140 503.4 387 67.4
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.7e-140 503.4 404 66.3
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 4.8e-140 501.9 434 67.7
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 4.8e-140 501.9 404 66.6
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 4.8e-140 501.9 407 67.6
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 2.4e-139 499.6 387 66.9
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 2.4e-139 499.6 430 67.7
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 2.4e-139 499.6 393 66.2
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 2.4e-139 499.6 390 69.5
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 3.1e-139 499.2 395 66.8
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 5.3e-139 498.4 396 67.7
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 7.0e-139 498.0 387 67.2
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 9.1e-139 497.7 390 67.9
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 9.1e-139 497.7 440 64.1
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 9.1e-139 497.7 440 64.1
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.6e-138 496.9 440 63.9
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 2.6e-138 496.1 401 65.8
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 4.5e-138 495.4 387 66.7
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 4.5e-138 495.4 387 66.7
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 4.5e-138 495.4 440 63.9
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 1.3e-137 493.8 428 65.4
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 1.3e-137 493.8 413 63.2
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 1.7e-137 493.4 392 67.6
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 1.7e-137 493.4 395 67.1
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 2.9e-137 492.7 390 67.7
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 2.9e-137 492.7 397 67.0
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 3.8e-137 492.3 440 63.6
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 5.0e-137 491.9 388 66.2
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 5.0e-137 491.9 440 63.6
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 5.0e-137 491.9 390 68.2
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 1.5e-136 490.3 398 66.1
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 2.5e-136 489.6 444 63.1
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 2.5e-136 489.6 392 64.3
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 5.5e-136 488.4 431 66.8
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 1.6e-135 486.9 441 63.7
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 2.1e-135 486.5 400 66.2
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 2.3e-134 483.0 417 62.8
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 3.0e-134 482.6 406 62.6
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 4.0e-134 482.3 441 62.4
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 5.2e-134 481.9 397 65.0
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 8.8e-134 481.1 383 66.6
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 8.8e-134 481.1 385 66.5
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 3.3e-133 479.2 394 64.5
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 5.7e-133 478.4 427 66.0
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 8.2e-132 474.6 428 65.0
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 7.0e-131 471.5 397 65.0
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 1.2e-130 470.7 421 61.3
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 3.5e-130 469.2 442 63.1
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 5.9e-130 468.4 384 65.6
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 1.0e-129 467.6 407 62.2
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 2.2e-129 466.5 430 60.9
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 6.5e-129 464.9 365 66.6
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 8.5e-129 464.5 397 63.0
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 1.9e-128 463.4 380 65.0
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 1.9e-128 463.4 380 65.3
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 4.2e-128 462.2 438 62.6
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 9.4e-128 461.1 444 61.5
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 1.0e-126 457.6 380 65.5
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 4.4e-125 452.2 402 64.9
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 5.7e-125 451.8 378 62.2
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 2.2e-124 449.9 380 64.2
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 6.3e-124 448.4 393 62.8
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 1.1e-123 447.6 441 59.0
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 9.1e-123 444.5 380 63.7
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 5.0e-121 438.7 398 60.8
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 5.5e-120 435.3 384 60.2
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.6e-119 433.7 395 56.7
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 2.8e-119 433.0 399 59.6
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 2.8e-119 433.0 394 56.6
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 4.7e-119 432.2 395 56.5
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 5.2e-118 428.7 454 59.0
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 1.0e-113 414.5 382 59.4
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 1.8e-110 403.7 384 60.2
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 1.8e-110 403.7 297 70.7
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 4.0e-110 402.5 386 57.5
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 1.4e-107 394.0 428 54.7
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 2.5e-104 383.3 319 63.0
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 3.6e-103 379.4 387 52.7
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 1.8e-102 377.1 395 51.4
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 2.1e-87 327.0 434 48.6
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 1.8e-86 323.9 336 53.3
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 1.6e-74 284.3 240 62.1
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 6.2e-71 272.3 311 49.2
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 8.7e-65 251.9 384 40.6
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 8.7e-65 251.9 213 59.6
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 4.3e-64 249.6 239 54.0
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 3.1e-62 243.4 233 58.4
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 1.8e-57 227.6 165 71.5
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 6.9e-54 215.7 198 69.2
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 1.7e-52 211.1 162 74.1
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 1.7e-52 211.1 203 56.7
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 4.9e-52 209.5 199 68.3
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 1.4e-46 191.4 164 62.8
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 8.5e-44 182.2 437 30.9
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 7.9e-42 175.6 293 36.9
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 2.2e-20 104.4 120 51.7
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 8.0e-18 95.9 75 60.0
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 2.7e-13 80.9 78 56.4
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 1.2e-10 72.0 321 24.9
C05p10420 Brassica napus HOM05D005312 ORTHO05D006459 5.7e-08 63.2 36 66.7
Pp3c8_13210 Physcomitrium patens HOM05D003180 ORTHO05D003664 9.1e-06 55.8 136 33.1


User provided reference genes

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